Wall clock time and date at job start Tue Mar 31 2020 08:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50701 * 109.47441 * 2 1 4 4 C 1.37980 * 120.05088 * 258.52143 * 3 2 1 5 5 C 1.38304 * 120.17458 * 179.97438 * 4 3 2 6 6 C 1.38594 * 120.26755 * 0.02562 * 5 4 3 7 7 F 1.35100 * 119.95351 * 179.97438 * 6 5 4 8 8 C 1.38172 * 120.09062 * 359.74483 * 6 5 4 9 9 C 1.39558 * 120.04285 * 78.49892 * 3 2 1 10 10 C 1.47850 * 120.13592 * 359.97438 * 9 3 2 11 11 O 1.21553 * 119.99553 * 49.40771 * 10 9 3 12 12 N 1.34777 * 120.00377 * 229.41086 * 10 9 3 13 13 C 1.46494 * 119.99798 * 5.23508 * 12 10 9 14 14 C 1.46497 * 119.99900 * 185.23546 * 12 10 9 15 15 C 1.53493 * 114.20639 * 120.00031 * 14 12 10 16 16 N 1.47070 * 87.98845 * 87.71756 * 15 14 12 17 17 C 1.36931 * 136.05841 * 207.09359 * 16 15 14 18 18 H 1.08001 * 120.00239 * 354.58663 * 17 16 15 19 19 C 1.38814 * 120.00125 * 174.59478 * 17 16 15 20 20 N 1.31613 * 120.00111 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99799 * 0.07536 * 19 17 16 22 22 H 1.48497 * 109.47239 * 175.07558 * 21 19 17 23 23 H 1.48504 * 109.47244 * 295.07386 * 21 19 17 24 24 H 1.48504 * 109.47329 * 55.07172 * 21 19 17 25 25 C 1.47071 * 87.87993 * 27.34266 * 16 15 14 26 26 H 1.09005 * 109.47232 * 59.99480 * 1 2 3 27 27 H 1.08996 * 109.47352 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47066 * 299.99677 * 1 2 3 29 29 H 1.09002 * 109.47066 * 240.00323 * 2 1 3 30 30 H 1.08996 * 109.47487 * 120.00587 * 2 1 3 31 31 H 1.07996 * 119.91285 * 359.97211 * 4 3 2 32 32 H 1.08002 * 119.86443 * 180.02562 * 5 4 3 33 33 H 1.08006 * 120.08903 * 180.28148 * 8 6 5 34 34 H 1.08997 * 109.47242 * 274.37955 * 13 12 10 35 35 H 1.08999 * 109.47495 * 34.38286 * 13 12 10 36 36 H 1.09003 * 109.47213 * 154.38106 * 13 12 10 37 37 H 1.08999 * 113.28425 * 346.93173 * 14 12 10 38 38 H 1.08999 * 113.46792 * 332.93733 * 15 14 12 39 39 H 1.09002 * 113.47055 * 202.49347 * 15 14 12 40 40 H 0.97003 * 120.00067 * 5.04121 * 20 19 17 41 41 H 1.08993 * 113.46757 * 87.44239 * 25 16 15 42 42 H 1.09007 * 113.46389 * 217.88310 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4868 1.9930 -1.1704 5 6 2.9479 3.2969 -1.1735 6 6 2.9574 4.0372 -0.0019 7 9 3.4097 5.3102 -0.0120 8 6 2.5004 3.4767 1.1755 9 6 2.0382 2.1598 1.1838 10 6 1.5514 1.5521 2.4407 11 8 1.9555 0.4580 2.7830 12 7 0.6596 2.2111 3.2068 13 6 0.0858 3.4755 2.7397 14 6 0.2642 1.6630 4.5065 15 6 0.5736 2.5810 5.6971 16 7 -0.7359 3.2150 5.4821 17 6 -1.2869 4.4454 5.7219 18 1 -0.7245 5.1931 6.2616 19 6 -2.5683 4.7318 5.2715 20 7 -3.0977 5.9146 5.5015 21 14 -3.5418 3.4380 4.3400 22 1 -4.9124 3.9447 4.0758 23 1 -2.8661 3.1429 3.0510 24 1 -3.6208 2.1976 5.1528 25 6 -1.1949 1.9440 4.9018 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.4824 1.4212 -2.0866 32 1 3.3021 3.7399 -2.0926 33 1 2.5035 4.0552 2.0876 34 1 0.7506 4.2969 3.0070 35 1 -0.0336 3.4423 1.6568 36 1 -0.8867 3.6281 3.2079 37 1 0.5720 0.6272 4.6490 38 1 1.4147 3.2516 5.5211 39 1 0.6482 2.0505 6.6464 40 1 -2.5672 6.6103 5.9207 41 1 -1.5864 1.2456 5.6414 42 1 -1.8605 2.0719 4.0481 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043220922.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:59 Heat of formation + Delta-G solvation = 1.818427 kcal Electronic energy + Delta-G solvation = -26096.338932 eV Core-core repulsion = 22378.837989 eV Total energy + Delta-G solvation = -3717.500943 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.95869 -41.94452 -40.44843 -38.94482 -35.95576 -34.79804 -34.47498 -32.38647 -30.21265 -30.01026 -27.93023 -27.02782 -25.95466 -24.58005 -24.09460 -22.57453 -21.57520 -20.30198 -19.52393 -18.78055 -18.19983 -17.76719 -17.37209 -16.82603 -16.66159 -16.27345 -16.20430 -15.86506 -15.59236 -15.24407 -15.09357 -14.78831 -14.42048 -14.26884 -14.16995 -13.96281 -13.58009 -13.45455 -13.30804 -13.00179 -12.67833 -12.60275 -12.50620 -12.42936 -12.19074 -12.03197 -11.94200 -11.25704 -11.14500 -11.06771 -10.90016 -10.16296 -9.69428 -9.62694 -9.20914 -8.61468 -5.46642 -0.24844 0.07539 1.35214 1.44389 1.47826 1.64902 1.80709 2.47737 2.51378 2.91372 3.08597 3.21860 3.38250 3.53921 3.65374 3.76823 3.93118 4.12111 4.14351 4.22387 4.28080 4.39083 4.45754 4.50501 4.52500 4.57105 4.60981 4.70143 4.73733 4.82464 4.93099 4.93882 5.03015 5.04917 5.09919 5.13709 5.17075 5.35032 5.44606 5.51660 5.76655 5.94845 6.28508 6.69969 6.94310 7.31794 8.24928 8.92675 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.015133 B = 0.005087 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.818888 B = 5503.033027 C = 6079.689145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C -0.047 4.047 4 C -0.084 4.084 5 C -0.118 4.118 6 C 0.074 3.926 7 F -0.146 7.146 8 C -0.128 4.128 9 C -0.115 4.115 10 C 0.567 3.433 11 O -0.555 6.555 12 N -0.578 5.578 13 C 0.086 3.914 14 C 0.114 3.886 15 C 0.111 3.889 16 N -0.649 5.649 17 C -0.278 4.278 18 H 0.048 0.952 19 C -0.076 4.076 20 N -0.972 5.972 21 Si 1.101 2.899 22 H -0.309 1.309 23 H -0.262 1.262 24 H -0.267 1.267 25 C 0.082 3.918 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.027 0.973 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.179 0.821 32 H 0.170 0.830 33 H 0.130 0.870 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.129 0.871 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.246 0.754 41 H 0.076 0.924 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.622 -12.071 -16.986 23.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 C -0.048 4.048 4 C -0.101 4.101 5 C -0.137 4.137 6 C 0.055 3.945 7 F -0.124 7.124 8 C -0.147 4.147 9 C -0.118 4.118 10 C 0.357 3.643 11 O -0.434 6.434 12 N -0.308 5.308 13 C -0.056 4.056 14 C 0.009 3.991 15 C -0.016 4.016 16 N -0.378 5.378 17 C -0.406 4.406 18 H 0.066 0.934 19 C -0.268 4.268 20 N -0.618 5.618 21 Si 0.929 3.071 22 H -0.238 1.238 23 H -0.189 1.189 24 H -0.193 1.193 25 C -0.043 4.043 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.046 0.954 29 H 0.124 0.876 30 H 0.094 0.906 31 H 0.196 0.804 32 H 0.188 0.812 33 H 0.147 0.853 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.147 0.853 38 H 0.061 0.939 39 H 0.089 0.911 40 H 0.056 0.944 41 H 0.093 0.907 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.297 -12.665 -17.410 23.865 hybrid contribution 1.389 1.680 1.834 2.849 sum 11.686 -10.985 -15.576 22.357 Atomic orbital electron populations 1.21714 0.94438 1.02628 1.01325 1.20786 0.96397 0.91338 1.04904 1.20257 0.96146 0.96860 0.91497 1.21272 0.96419 0.94103 0.98332 1.21662 0.99709 0.94854 0.97442 1.17698 1.01477 0.80100 0.95257 1.91502 1.86960 1.36663 1.97297 1.21267 1.00364 0.94643 0.98475 1.19483 1.04215 0.94111 0.94003 1.18473 0.78131 0.84221 0.83458 1.90697 1.58824 1.20626 1.73283 1.47377 1.42077 1.23371 1.18000 1.21916 1.00209 0.84224 0.99287 1.22385 0.95640 0.98288 0.82776 1.22966 0.88588 0.93378 0.96643 1.46196 1.11118 1.06864 1.73635 1.19901 1.00602 0.87895 1.32159 0.93431 1.26790 0.96230 1.02313 1.01503 1.71008 1.38289 1.04356 1.48154 0.83431 0.74053 0.73140 0.76520 1.23792 1.18924 1.19264 1.23410 0.95784 0.88054 0.97022 0.91250 0.90924 0.95414 0.87572 0.90642 0.80406 0.81249 0.85255 0.93169 0.90691 0.90608 0.85333 0.93918 0.91061 0.94427 0.90663 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.83 71.98 0.71 -2.06 16 2 C -0.10 -1.84 5.53 29.85 0.17 -1.67 16 3 C -0.05 -0.97 5.17 -19.61 -0.10 -1.07 16 4 C -0.08 -1.21 9.65 22.22 0.21 -1.00 16 5 C -0.12 -1.88 10.02 22.37 0.22 -1.66 16 6 C 0.07 1.67 7.29 22.34 0.16 1.84 16 7 F -0.15 -3.61 17.26 44.97 0.78 -2.84 16 8 C -0.13 -3.34 8.10 22.58 0.18 -3.16 16 9 C -0.12 -3.07 4.69 -20.09 -0.09 -3.16 16 10 C 0.57 17.96 5.78 86.79 0.50 18.46 16 11 O -0.55 -19.30 14.44 -3.88 -0.06 -19.36 16 12 N -0.58 -19.46 3.12 -824.83 -2.57 -22.03 16 13 C 0.09 3.04 8.27 127.77 1.06 4.10 16 14 C 0.11 3.89 4.69 45.55 0.21 4.11 16 15 C 0.11 4.14 8.31 83.17 0.69 4.83 16 16 N -0.65 -29.67 2.41 -738.02 -1.78 -31.45 16 17 C -0.28 -15.47 10.60 84.04 0.89 -14.58 16 18 H 0.05 2.91 8.05 -2.91 -0.02 2.89 16 19 C -0.08 -4.40 5.49 84.86 0.47 -3.93 16 20 N -0.97 -61.50 13.70 21.65 0.30 -61.20 16 21 Si 1.10 51.71 23.93 68.60 1.64 53.35 16 22 H -0.31 -15.19 7.11 99.48 0.71 -14.48 16 23 H -0.26 -11.00 5.80 99.48 0.58 -10.42 16 24 H -0.27 -11.44 6.51 99.48 0.65 -10.79 16 25 C 0.08 3.18 5.04 83.26 0.42 3.60 16 26 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.03 0.68 7.23 -2.39 -0.02 0.66 16 29 H 0.11 1.30 7.99 -2.39 -0.02 1.28 16 30 H 0.08 1.84 6.01 -2.39 -0.01 1.82 16 31 H 0.18 1.18 8.02 -2.91 -0.02 1.16 16 32 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 33 H 0.13 3.62 6.69 -2.91 -0.02 3.60 16 34 H 0.05 1.79 7.01 -2.39 -0.02 1.78 16 35 H 0.07 2.31 6.88 -2.39 -0.02 2.29 16 36 H 0.08 3.17 3.13 -2.39 -0.01 3.16 16 37 H 0.13 3.96 7.26 -2.39 -0.02 3.94 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.25 15.73 8.73 -92.71 -0.81 14.92 16 41 H 0.08 2.68 8.10 -2.39 -0.02 2.66 16 42 H 0.05 2.02 3.42 -2.38 -0.01 2.01 16 Total: -1.00 -69.33 331.87 4.83 -64.50 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.82 Total: 14.40 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 5.70 Total: 4.63 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -4.05 Total: -114.68 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.06 Total: -19.36 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.78 Total: -2.84 kcal Atomic # 14 Polarization: 51.71 SS G_CDS: 1.64 Total: 53.35 kcal Total: -69.33 4.83 -64.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043220922.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.315 kcal (2) G-P(sol) polarization free energy of solvation -69.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds