Wall clock time and date at job start Tue Mar 31 2020 08:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30648 * 128.63680 * 2 1 4 4 O 1.20846 * 109.61255 * 180.23565 * 3 2 1 5 5 N 1.20899 * 115.91009 * 359.74444 * 4 3 2 6 6 C 1.31599 * 109.18116 * 359.97438 * 5 4 3 7 7 C 1.48274 * 128.71530 * 179.97438 * 6 5 4 8 8 O 1.21500 * 120.00324 * 174.13399 * 7 6 5 9 9 N 1.34780 * 120.00044 * 354.13770 * 7 6 5 10 10 C 1.46798 * 119.58031 * 173.32042 * 9 7 6 11 11 C 1.53463 * 107.59745 * 128.22632 * 10 9 7 12 12 C 1.52739 * 108.43805 * 58.08048 * 11 10 9 13 13 C 1.53019 * 110.80146 * 296.23009 * 12 11 10 14 14 H 1.08995 * 112.09515 * 290.71861 * 13 12 11 15 15 C 1.45121 * 119.57434 * 353.59238 * 9 7 6 16 16 H 1.09003 * 109.97095 * 347.79090 * 15 9 7 17 17 C 1.54424 * 111.60515 * 111.06815 * 15 9 7 18 18 C 1.54570 * 102.44875 * 156.58048 * 17 15 9 19 19 N 1.47121 * 107.25192 * 338.33542 * 18 17 15 20 20 C 1.36939 * 125.76989 * 177.44006 * 19 18 17 21 21 H 1.08001 * 120.00256 * 179.97438 * 20 19 18 22 22 C 1.38812 * 119.99605 * 359.95164 * 20 19 18 23 23 N 1.31614 * 120.00171 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99761 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46931 * 90.00345 * 24 22 20 26 26 H 1.48502 * 109.47075 * 210.00163 * 24 22 20 27 27 H 1.48499 * 109.47692 * 330.00359 * 24 22 20 28 28 H 1.09006 * 109.47240 * 270.15812 * 1 2 3 29 29 H 1.08996 * 109.47014 * 30.16089 * 1 2 3 30 30 H 1.08997 * 109.47123 * 150.16208 * 1 2 3 31 31 H 1.09000 * 109.83590 * 247.75593 * 10 9 7 32 32 H 1.09001 * 109.82972 * 8.70641 * 10 9 7 33 33 H 1.09002 * 109.64410 * 298.39761 * 11 10 9 34 34 H 1.08994 * 109.82082 * 177.86771 * 11 10 9 35 35 H 1.09002 * 109.21436 * 175.88753 * 12 11 10 36 36 H 1.09005 * 109.21233 * 56.56631 * 12 11 10 37 37 H 1.08998 * 110.81248 * 274.81721 * 17 15 9 38 38 H 1.09000 * 110.81477 * 38.34128 * 17 15 9 39 39 H 1.08995 * 109.88495 * 218.92818 * 18 17 15 40 40 H 1.08994 * 109.88377 * 97.74307 * 18 17 15 41 41 H 0.97001 * 120.00452 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0205 0.0000 4 8 3.4652 0.6266 -0.0047 5 7 3.6102 -0.5737 -0.0034 6 6 2.4281 -1.1519 0.0036 7 6 2.1034 -2.5987 0.0073 8 8 0.9497 -2.9622 0.1214 9 7 3.0882 -3.5106 -0.1160 10 6 2.7777 -4.9374 0.0359 11 6 3.3388 -5.6675 -1.1918 12 6 4.8409 -5.4013 -1.2676 13 6 5.1184 -3.9131 -1.4909 14 1 4.8185 -3.5850 -2.4861 15 6 4.4429 -3.0691 -0.3913 16 1 4.4408 -2.0173 -0.6772 17 6 5.3744 -3.3048 0.8176 18 6 6.7702 -3.3641 0.1561 19 7 6.5672 -3.7004 -1.2617 20 6 7.5506 -3.8009 -2.2093 21 1 7.2955 -4.0551 -3.2275 22 6 8.8754 -3.5757 -1.8612 23 7 9.1862 -3.2661 -0.6203 24 14 10.2170 -3.7135 -3.1536 25 1 10.4210 -2.3913 -3.7982 26 1 11.4817 -4.1506 -2.5096 27 1 9.8150 -4.7080 -4.1805 28 1 -0.3634 0.0028 1.0277 29 1 -0.3633 0.8885 -0.5163 30 1 -0.3633 -0.8914 -0.5113 31 1 3.2456 -5.3233 0.9416 32 1 1.6980 -5.0773 0.0880 33 1 2.8544 -5.2933 -2.0938 34 1 3.1608 -6.7387 -1.0980 35 1 5.2654 -5.9731 -2.0928 36 1 5.3087 -5.7173 -0.3351 37 1 5.3141 -2.4741 1.5207 38 1 5.1389 -4.2483 1.3100 39 1 7.3757 -4.1327 0.6364 40 1 7.2619 -2.3950 0.2404 41 1 10.1119 -3.1083 -0.3771 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049926953.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:28 Heat of formation + Delta-G solvation = 123.844346 kcal Electronic energy + Delta-G solvation = -26535.759698 eV Core-core repulsion = 22843.470158 eV Total energy + Delta-G solvation = -3692.289540 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.89205 -40.50848 -38.27968 -35.37649 -35.01714 -34.87939 -32.70034 -32.13205 -29.65781 -29.05737 -28.35919 -26.25541 -24.57242 -24.06387 -22.58616 -22.08927 -20.85391 -20.05461 -19.06588 -18.98861 -17.54641 -17.24170 -16.73973 -16.06186 -15.12713 -14.80276 -14.65114 -14.41240 -14.02023 -13.79209 -13.70900 -13.56450 -13.36537 -12.99292 -12.65361 -12.42932 -12.08601 -12.02381 -11.68698 -11.36656 -11.20165 -11.04614 -10.97704 -10.81457 -10.69889 -10.57784 -10.43953 -10.38095 -10.11294 -9.96755 -9.66485 -9.58635 -8.67202 -8.47748 -6.90813 -5.74645 -3.09150 0.74101 1.24114 2.56970 2.86731 3.30874 3.38147 3.39823 3.43678 3.45274 3.76037 4.41398 4.51332 4.67200 4.96050 5.06090 5.15164 5.21142 5.23536 5.29735 5.39401 5.46128 5.48557 5.57209 5.70443 5.76500 5.80604 6.00707 6.06979 6.14887 6.22501 6.25966 6.43241 6.44231 6.65846 6.75922 6.97525 7.32638 7.50837 7.56845 7.78635 7.88092 8.19532 8.44152 9.16579 9.76059 10.41324 11.36536 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.017453 B = 0.004862 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.901067 B = 5757.023437 C = 6796.694764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.057 3.943 3 N -0.360 5.360 4 O 0.339 5.661 5 N -0.301 5.301 6 C -0.044 4.044 7 C 0.602 3.398 8 O -0.528 6.528 9 N -0.571 5.571 10 C 0.113 3.887 11 C -0.132 4.132 12 C -0.131 4.131 13 C 0.157 3.843 14 H 0.059 0.941 15 C 0.104 3.896 16 H 0.119 0.881 17 C -0.148 4.148 18 C 0.182 3.818 19 N -0.596 5.596 20 C -0.229 4.229 21 H 0.078 0.922 22 C -0.004 4.004 23 N -0.920 5.920 24 Si 0.911 3.089 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.042 0.958 40 H 0.054 0.946 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.869 1.884 2.680 16.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.109 4.109 3 N -0.086 5.086 4 O 0.115 5.885 5 N -0.021 5.021 6 C -0.209 4.209 7 C 0.386 3.614 8 O -0.404 6.404 9 N -0.301 5.301 10 C -0.008 4.008 11 C -0.171 4.171 12 C -0.171 4.171 13 C 0.049 3.951 14 H 0.077 0.923 15 C -0.001 4.001 16 H 0.136 0.864 17 C -0.187 4.187 18 C 0.057 3.943 19 N -0.321 5.321 20 C -0.357 4.357 21 H 0.096 0.904 22 C -0.201 4.201 23 N -0.567 5.567 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.224 2.391 2.731 15.651 hybrid contribution 0.380 -0.623 -0.592 0.939 sum -14.844 1.769 2.139 15.101 Atomic orbital electron populations 1.20287 0.83098 1.04971 1.04556 1.26180 1.00205 0.85331 0.99212 1.75044 0.91340 1.24168 1.18068 1.85128 1.23095 1.17302 1.62971 1.75596 1.22298 0.92283 1.11960 1.26096 0.87998 0.98423 1.08395 1.16620 0.85280 0.81717 0.77772 1.90759 1.18894 1.79493 1.51245 1.47570 1.08668 1.06646 1.67240 1.21824 1.01859 0.78299 0.98858 1.21927 0.97882 0.99788 0.97507 1.22139 0.93152 0.99137 1.02677 1.21332 0.86341 0.92150 0.95303 0.92272 1.22594 0.78921 1.00898 0.97665 0.86396 1.23094 0.98369 1.00553 0.96725 1.21175 0.89266 1.00675 0.83187 1.44697 0.99344 1.81907 1.06142 1.19017 0.85682 1.41098 0.89898 0.90449 1.24778 0.97074 1.01648 0.96588 1.69944 1.17332 1.53417 1.15991 0.86137 0.81591 0.77717 0.80399 1.21560 1.21678 1.20732 0.88977 0.89598 0.88224 0.90876 0.88802 0.91767 0.90943 0.91903 0.91679 0.91960 0.92153 0.93973 0.92775 0.93676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.20 36.01 0.37 -0.26 16 2 C 0.06 0.71 7.79 -79.33 -0.62 0.09 16 3 N -0.36 -4.82 12.22 33.76 0.41 -4.40 16 4 O 0.34 4.91 11.65 27.26 0.32 5.22 16 5 N -0.30 -4.70 9.00 33.49 0.30 -4.40 16 6 C -0.04 -0.65 7.14 -80.07 -0.57 -1.22 16 7 C 0.60 9.26 7.67 -12.13 -0.09 9.17 16 8 O -0.53 -8.39 15.38 5.37 0.08 -8.31 16 9 N -0.57 -8.81 2.73 -165.97 -0.45 -9.26 16 10 C 0.11 1.51 6.17 -3.64 -0.02 1.49 16 11 C -0.13 -1.77 6.11 -26.62 -0.16 -1.93 16 12 C -0.13 -2.24 5.10 -26.85 -0.14 -2.38 16 13 C 0.16 3.09 3.60 -66.35 -0.24 2.86 16 14 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 15 C 0.10 1.83 2.72 -67.30 -0.18 1.65 16 16 H 0.12 2.20 4.37 -52.48 -0.23 1.98 16 17 C -0.15 -2.74 6.08 -25.16 -0.15 -2.89 16 18 C 0.18 4.26 5.19 -2.88 -0.01 4.24 16 19 N -0.60 -14.42 2.91 -162.20 -0.47 -14.90 16 20 C -0.23 -6.13 10.29 -15.06 -0.15 -6.29 16 21 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 22 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 23 N -0.92 -26.33 10.33 55.49 0.57 -25.75 16 24 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.10 0.91 7.43 -51.93 -0.39 0.52 16 31 H 0.07 0.93 7.53 -51.93 -0.39 0.54 16 32 H 0.09 1.19 6.93 -51.93 -0.36 0.83 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.19 7.12 -51.93 -0.37 0.82 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.05 6.81 -51.93 -0.35 0.69 16 39 H 0.04 1.09 7.60 -51.93 -0.39 0.69 16 40 H 0.05 1.42 7.30 -51.93 -0.38 1.04 16 41 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 326.84 15.07 4.93 4.93 Total: -1.00 -29.45 326.84 -6.78 -36.23 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.37 Total: -0.35 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -2.08 Total: 4.31 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: 0.36 Total: -58.71 kcal Atomic # 8 Polarization: -3.48 SS G_CDS: 0.40 Total: -3.08 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.45 -6.78 -36.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049926953.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.075 kcal (2) G-P(sol) polarization free energy of solvation -29.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds