Wall clock time and date at job start Tue Mar 31 2020 08:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30648 * 128.63680 * 2 1 4 4 O 1.20846 * 109.61255 * 180.23565 * 3 2 1 5 5 N 1.20899 * 115.91009 * 359.74444 * 4 3 2 6 6 C 1.31599 * 109.18116 * 359.97438 * 5 4 3 7 7 C 1.48274 * 128.71530 * 179.97438 * 6 5 4 8 8 O 1.21500 * 120.00324 * 174.13399 * 7 6 5 9 9 N 1.34780 * 120.00044 * 354.13770 * 7 6 5 10 10 C 1.46798 * 119.58031 * 173.32042 * 9 7 6 11 11 C 1.53463 * 107.59745 * 128.22632 * 10 9 7 12 12 C 1.52739 * 108.43805 * 58.08048 * 11 10 9 13 13 C 1.53019 * 110.80146 * 296.23009 * 12 11 10 14 14 H 1.08995 * 112.09515 * 290.71861 * 13 12 11 15 15 C 1.45121 * 119.57434 * 353.59238 * 9 7 6 16 16 H 1.09003 * 109.97095 * 347.79090 * 15 9 7 17 17 C 1.54424 * 111.60515 * 111.06815 * 15 9 7 18 18 C 1.54570 * 102.44875 * 156.58048 * 17 15 9 19 19 N 1.47121 * 107.25192 * 338.33542 * 18 17 15 20 20 C 1.36939 * 125.76989 * 177.44006 * 19 18 17 21 21 H 1.08001 * 120.00256 * 179.97438 * 20 19 18 22 22 C 1.38812 * 119.99605 * 359.95164 * 20 19 18 23 23 N 1.31614 * 120.00171 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99761 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46931 * 90.00345 * 24 22 20 26 26 H 1.48502 * 109.47075 * 210.00163 * 24 22 20 27 27 H 1.48499 * 109.47692 * 330.00359 * 24 22 20 28 28 H 1.09006 * 109.47240 * 270.15812 * 1 2 3 29 29 H 1.08996 * 109.47014 * 30.16089 * 1 2 3 30 30 H 1.08997 * 109.47123 * 150.16208 * 1 2 3 31 31 H 1.09000 * 109.83590 * 247.75593 * 10 9 7 32 32 H 1.09001 * 109.82972 * 8.70641 * 10 9 7 33 33 H 1.09002 * 109.64410 * 298.39761 * 11 10 9 34 34 H 1.08994 * 109.82082 * 177.86771 * 11 10 9 35 35 H 1.09002 * 109.21436 * 175.88753 * 12 11 10 36 36 H 1.09005 * 109.21233 * 56.56631 * 12 11 10 37 37 H 1.08998 * 110.81248 * 274.81721 * 17 15 9 38 38 H 1.09000 * 110.81477 * 38.34128 * 17 15 9 39 39 H 1.08995 * 109.88495 * 218.92818 * 18 17 15 40 40 H 1.08994 * 109.88377 * 97.74307 * 18 17 15 41 41 H 0.97001 * 120.00452 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0205 0.0000 4 8 3.4652 0.6266 -0.0047 5 7 3.6102 -0.5737 -0.0034 6 6 2.4281 -1.1519 0.0036 7 6 2.1034 -2.5987 0.0073 8 8 0.9497 -2.9622 0.1214 9 7 3.0882 -3.5106 -0.1160 10 6 2.7777 -4.9374 0.0359 11 6 3.3388 -5.6675 -1.1918 12 6 4.8409 -5.4013 -1.2676 13 6 5.1184 -3.9131 -1.4909 14 1 4.8185 -3.5850 -2.4861 15 6 4.4429 -3.0691 -0.3913 16 1 4.4408 -2.0173 -0.6772 17 6 5.3744 -3.3048 0.8176 18 6 6.7702 -3.3641 0.1561 19 7 6.5672 -3.7004 -1.2617 20 6 7.5506 -3.8009 -2.2093 21 1 7.2955 -4.0551 -3.2275 22 6 8.8754 -3.5757 -1.8612 23 7 9.1862 -3.2661 -0.6203 24 14 10.2170 -3.7135 -3.1536 25 1 10.4210 -2.3913 -3.7982 26 1 11.4817 -4.1506 -2.5096 27 1 9.8150 -4.7080 -4.1805 28 1 -0.3634 0.0028 1.0277 29 1 -0.3633 0.8885 -0.5163 30 1 -0.3633 -0.8914 -0.5113 31 1 3.2456 -5.3233 0.9416 32 1 1.6980 -5.0773 0.0880 33 1 2.8544 -5.2933 -2.0938 34 1 3.1608 -6.7387 -1.0980 35 1 5.2654 -5.9731 -2.0928 36 1 5.3087 -5.7173 -0.3351 37 1 5.3141 -2.4741 1.5207 38 1 5.1389 -4.2483 1.3100 39 1 7.3757 -4.1327 0.6364 40 1 7.2619 -2.3950 0.2404 41 1 10.1119 -3.1083 -0.3771 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049926953.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:27 Heat of formation + Delta-G solvation = 106.598385 kcal Electronic energy + Delta-G solvation = -26536.507539 eV Core-core repulsion = 22843.470158 eV Total energy + Delta-G solvation = -3693.037381 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -47.97278 -41.82549 -39.70731 -36.73786 -36.21359 -36.00786 -34.03592 -33.96033 -30.91448 -30.45457 -29.85949 -27.48318 -26.41224 -25.40351 -23.69107 -23.35551 -22.23180 -21.80875 -20.24050 -20.14853 -19.07549 -18.54082 -18.22898 -17.30897 -16.76976 -16.37771 -16.16218 -15.73926 -15.26429 -15.11246 -14.88167 -14.50223 -14.47595 -14.29621 -14.14591 -13.89115 -13.60484 -13.19776 -12.98482 -12.91113 -12.69145 -12.61453 -12.42183 -12.34500 -12.28919 -12.04882 -11.93519 -11.69135 -11.53314 -11.47592 -11.40254 -11.06652 -10.70333 -9.80817 -8.89481 -7.83193 -5.18861 -0.41102 0.23306 1.39498 1.47356 1.48246 1.56553 1.68074 2.23957 2.32386 2.48922 2.65407 3.29566 3.35344 3.57270 3.65254 3.78726 3.84206 4.00170 4.08700 4.08874 4.16040 4.36960 4.53482 4.58038 4.61711 4.62764 4.72117 4.77474 4.82859 4.95528 5.01282 5.06973 5.10044 5.31268 5.38291 5.44055 5.55303 5.63826 5.75425 6.03396 6.19587 6.66694 7.10101 7.34696 7.75745 8.40658 9.26736 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.017453 B = 0.004862 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.901067 B = 5757.023437 C = 6796.694764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.072 3.928 3 N -0.366 5.366 4 O 0.330 5.670 5 N -0.320 5.320 6 C -0.060 4.060 7 C 0.606 3.394 8 O -0.528 6.528 9 N -0.572 5.572 10 C 0.110 3.890 11 C -0.120 4.120 12 C -0.121 4.121 13 C 0.151 3.849 14 H 0.053 0.947 15 C 0.122 3.878 16 H 0.110 0.890 17 C -0.131 4.131 18 C 0.194 3.806 19 N -0.615 5.615 20 C -0.236 4.236 21 H 0.081 0.919 22 C -0.061 4.061 23 N -0.949 5.949 24 Si 0.974 3.026 25 H -0.288 1.288 26 H -0.296 1.296 27 H -0.269 1.269 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.009 0.991 40 H 0.016 0.984 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.457 1.303 2.396 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.094 4.094 3 N -0.095 5.095 4 O 0.109 5.891 5 N -0.041 5.041 6 C -0.225 4.225 7 C 0.391 3.609 8 O -0.404 6.404 9 N -0.303 5.303 10 C -0.010 4.010 11 C -0.158 4.158 12 C -0.161 4.161 13 C 0.043 3.957 14 H 0.071 0.929 15 C 0.016 3.984 16 H 0.128 0.872 17 C -0.170 4.170 18 C 0.069 3.931 19 N -0.340 5.340 20 C -0.365 4.365 21 H 0.099 0.901 22 C -0.254 4.254 23 N -0.598 5.598 24 Si 0.802 3.198 25 H -0.215 1.215 26 H -0.222 1.222 27 H -0.194 1.194 28 H 0.129 0.871 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.128 0.872 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.028 0.972 40 H 0.034 0.966 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -17.852 1.786 2.433 18.106 hybrid contribution 1.090 -0.413 -0.519 1.276 sum -16.762 1.373 1.914 16.927 Atomic orbital electron populations 1.20523 0.80313 1.06044 1.06010 1.26760 1.01521 0.84062 0.97078 1.75060 0.91097 1.24384 1.18920 1.85121 1.23793 1.16819 1.63364 1.75540 1.23205 0.92896 1.12414 1.26236 0.88415 0.98762 1.09086 1.16618 0.85117 0.81830 0.77383 1.90756 1.18731 1.79639 1.51301 1.47531 1.07494 1.07731 1.67515 1.22031 1.02923 0.76851 0.99191 1.21857 0.94403 1.01787 0.97770 1.21937 0.96135 0.96520 1.01502 1.21552 0.84026 0.94303 0.95775 0.92892 1.22168 0.79989 1.00125 0.96099 0.87249 1.22891 0.95437 1.01766 0.96917 1.20830 0.91500 0.97362 0.83432 1.44910 1.01104 1.81946 1.06021 1.19367 0.86587 1.39894 0.90628 0.90101 1.25551 0.99199 1.02253 0.98395 1.70157 1.17061 1.54904 1.17705 0.85151 0.78631 0.77684 0.78300 1.21540 1.22213 1.19406 0.87136 0.87429 0.88157 0.89836 0.87221 0.91479 0.87906 0.93038 0.92879 0.91162 0.90482 0.97232 0.96610 0.94441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.20 71.24 0.73 -0.31 16 2 C 0.07 1.66 7.79 45.18 0.35 2.02 16 3 N -0.37 -9.35 12.22 -51.80 -0.63 -9.98 16 4 O 0.33 9.49 11.65 140.85 1.64 11.13 16 5 N -0.32 -9.90 9.00 -52.07 -0.47 -10.37 16 6 C -0.06 -1.69 7.14 44.29 0.32 -1.38 16 7 C 0.61 17.28 7.67 86.91 0.67 17.94 16 8 O -0.53 -15.17 15.38 -3.72 -0.06 -15.23 16 9 N -0.57 -16.45 2.73 -797.29 -2.18 -18.62 16 10 C 0.11 2.59 6.17 86.48 0.53 3.12 16 11 C -0.12 -2.83 6.11 30.66 0.19 -2.64 16 12 C -0.12 -4.00 5.10 30.51 0.16 -3.85 16 13 C 0.15 5.89 3.60 45.08 0.16 6.06 16 14 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 15 C 0.12 4.22 2.72 46.14 0.13 4.35 16 16 H 0.11 4.09 4.37 -3.41 -0.01 4.07 16 17 C -0.13 -4.83 6.08 31.61 0.19 -4.64 16 18 C 0.19 9.46 5.19 86.80 0.45 9.91 16 19 N -0.61 -30.50 2.91 -667.07 -1.94 -32.44 16 20 C -0.24 -12.91 10.29 84.03 0.86 -12.05 16 21 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 22 C -0.06 -3.41 5.49 84.86 0.47 -2.95 16 23 N -0.95 -56.55 10.33 21.65 0.22 -56.33 16 24 Si 0.97 45.47 29.55 68.60 2.03 47.50 16 25 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 26 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 28 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.10 1.51 7.43 -2.39 -0.02 1.49 16 31 H 0.08 1.83 7.53 -2.39 -0.02 1.81 16 32 H 0.11 2.32 6.93 -2.39 -0.02 2.31 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.05 1.88 7.12 -2.38 -0.02 1.87 16 37 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.08 2.59 6.81 -2.39 -0.02 2.57 16 39 H 0.01 0.52 7.60 -2.39 -0.02 0.50 16 40 H 0.02 0.87 7.30 -2.39 -0.02 0.85 16 41 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -65.24 326.84 4.86 -60.38 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 1.06 Total: 8.39 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 5.20 Total: 15.58 kcal Atomic # 7 Polarization: -122.75 SS G_CDS: -5.00 Total: -127.75 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: 1.58 Total: -4.10 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -65.24 4.86 -60.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049926953.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.975 kcal (2) G-P(sol) polarization free energy of solvation -65.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds