Wall clock time and date at job start Tue Mar 31 2020 08:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30648 * 128.64190 * 2 1 4 4 O 1.20836 * 109.61626 * 180.02562 * 3 2 1 5 5 N 1.20898 * 115.91202 * 359.69215 * 4 3 2 6 6 C 1.31599 * 109.17762 * 0.50000 * 5 4 3 7 7 C 1.48283 * 128.71267 * 179.82651 * 6 5 4 8 8 O 1.21495 * 120.00032 * 185.59274 * 7 6 5 9 9 N 1.34777 * 119.99661 * 5.58651 * 7 6 5 10 10 C 1.44507 * 116.63397 * 355.21993 * 9 7 6 11 11 C 1.50533 * 112.65481 * 154.85229 * 10 9 7 12 12 C 1.51335 * 112.60075 * 42.37071 * 11 10 9 13 13 C 1.50709 * 113.44966 * 305.10638 * 12 11 10 14 14 H 1.09003 * 109.33172 * 169.11505 * 13 12 11 15 15 C 1.54186 * 110.50457 * 289.43872 * 13 12 11 16 16 N 1.46919 * 106.26186 * 151.08530 * 15 13 12 17 17 C 1.36940 * 125.37416 * 162.13329 * 16 15 13 18 18 H 1.07998 * 120.00080 * 0.02562 * 17 16 15 19 19 C 1.38819 * 120.00105 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99918 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99944 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47236 * 59.99850 * 21 19 17 23 23 H 1.48496 * 109.46947 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47260 * 300.00028 * 21 19 17 25 25 C 1.46810 * 109.25206 * 342.15313 * 16 15 13 26 26 C 1.44104 * 116.62696 * 175.19516 * 9 7 6 27 27 H 1.08992 * 108.46021 * 74.38005 * 26 9 7 28 28 H 1.09007 * 109.47319 * 269.97287 * 1 2 3 29 29 H 1.08998 * 109.47459 * 29.96993 * 1 2 3 30 30 H 1.08996 * 109.47432 * 149.97808 * 1 2 3 31 31 H 1.08997 * 108.84641 * 275.39615 * 10 9 7 32 32 H 1.08994 * 108.84568 * 33.86501 * 10 9 7 33 33 H 1.08997 * 108.22385 * 281.84905 * 11 10 9 34 34 H 1.08997 * 109.10245 * 163.49781 * 11 10 9 35 35 H 1.08996 * 108.66714 * 184.11723 * 12 11 10 36 36 H 1.09002 * 108.66433 * 66.09604 * 12 11 10 37 37 H 1.08994 * 110.09585 * 270.28968 * 15 13 12 38 38 H 1.09004 * 110.09409 * 31.82686 * 15 13 12 39 39 H 0.97001 * 119.99949 * 180.02562 * 20 19 17 40 40 H 1.09010 * 109.84071 * 120.40505 * 25 16 15 41 41 H 1.08994 * 109.84708 * 241.31146 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0204 0.0000 4 8 3.4651 0.6265 -0.0005 5 7 3.6101 -0.5737 0.0049 6 6 2.4280 -1.1520 -0.0006 7 6 2.1033 -2.5988 -0.0008 8 8 0.9491 -2.9624 -0.1090 9 7 3.0887 -3.5105 0.1189 10 6 4.4418 -3.0035 0.1356 11 6 5.3970 -3.9236 0.8477 12 6 5.1686 -5.3793 0.5026 13 6 3.7534 -5.8379 0.7438 14 1 3.6125 -6.8230 0.2988 15 6 3.4610 -5.9155 2.2556 16 7 2.0214 -5.6658 2.4096 17 6 1.2771 -5.9752 3.5167 18 1 1.7467 -6.4418 4.3699 19 6 -0.0811 -5.6891 3.5421 20 7 -0.6535 -5.1208 2.5020 21 14 -1.0965 -6.1118 5.0519 22 1 -0.5553 -5.3888 6.2308 23 1 -2.5076 -5.7071 4.8285 24 1 -1.0335 -7.5751 5.2970 25 6 1.5067 -5.0326 1.1892 26 6 2.6838 -4.8900 0.2176 27 1 2.3630 -5.2269 -0.7681 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5133 30 1 -0.3634 -0.8897 -0.5141 31 1 4.7825 -2.8754 -0.8918 32 1 4.4481 -2.0331 0.6317 33 1 5.2639 -3.7887 1.9210 34 1 6.4186 -3.6524 0.5818 35 1 5.8408 -5.9902 1.1050 36 1 5.4099 -5.5304 -0.5496 37 1 3.7121 -6.9058 2.6353 38 1 4.0329 -5.1549 2.7872 39 1 -1.6024 -4.9206 2.5199 40 1 0.7272 -5.6553 0.7499 41 1 1.1041 -4.0476 1.4249 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050214031.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:33 Heat of formation + Delta-G solvation = 135.409487 kcal Electronic energy + Delta-G solvation = -26813.938452 eV Core-core repulsion = 23122.150414 eV Total energy + Delta-G solvation = -3691.788038 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -46.80390 -40.70683 -37.88972 -35.77716 -35.13129 -34.48135 -33.22701 -32.10831 -29.80483 -29.33743 -27.59951 -25.71806 -25.50796 -23.98208 -22.48331 -22.11485 -21.21069 -19.85707 -19.01056 -18.17132 -17.65483 -17.18655 -16.55912 -16.07358 -15.30493 -14.56142 -14.50317 -14.32623 -14.05130 -13.90895 -13.73566 -13.48404 -13.26074 -13.07641 -12.58970 -12.40841 -12.02072 -11.93164 -11.82491 -11.32688 -11.09076 -11.00793 -10.97440 -10.74050 -10.63822 -10.35005 -10.30091 -10.19106 -10.09440 -9.98473 -9.66879 -9.38077 -8.52400 -8.14657 -6.73895 -5.61784 -2.97870 0.86378 1.37730 2.79600 3.23945 3.43094 3.45091 3.47313 3.48884 3.53658 3.93717 4.54122 4.61512 4.76525 4.90122 4.97469 5.08905 5.15577 5.21759 5.38967 5.51204 5.55111 5.63230 5.65836 5.72768 5.83213 5.93955 5.96190 6.05309 6.08960 6.19613 6.23178 6.38387 6.54876 6.66861 6.70214 6.99228 7.41513 7.67442 7.73859 8.00039 8.24913 8.39153 8.52139 9.28293 9.89102 10.53353 11.47094 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.006101 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.779717 B = 4588.071471 C = 6121.058423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.062 3.938 3 N -0.363 5.363 4 O 0.325 5.675 5 N -0.325 5.325 6 C -0.027 4.027 7 C 0.581 3.419 8 O -0.476 6.476 9 N -0.567 5.567 10 C 0.100 3.900 11 C -0.127 4.127 12 C -0.102 4.102 13 C -0.102 4.102 14 H 0.084 0.916 15 C 0.141 3.859 16 N -0.606 5.606 17 C -0.235 4.235 18 H 0.075 0.925 19 C -0.005 4.005 20 N -0.910 5.910 21 Si 0.909 3.091 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.167 3.833 26 C 0.130 3.870 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.034 0.966 38 H 0.016 0.984 39 H 0.253 0.747 40 H 0.057 0.943 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.945 7.358 -7.787 14.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.103 4.103 3 N -0.090 5.090 4 O 0.105 5.895 5 N -0.051 5.051 6 C -0.192 4.192 7 C 0.364 3.636 8 O -0.347 6.347 9 N -0.301 5.301 10 C -0.024 4.024 11 C -0.164 4.164 12 C -0.140 4.140 13 C -0.121 4.121 14 H 0.102 0.898 15 C 0.014 3.986 16 N -0.333 5.333 17 C -0.363 4.363 18 H 0.093 0.907 19 C -0.202 4.202 20 N -0.556 5.556 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.043 3.957 26 C 0.027 3.973 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.102 0.898 30 H 0.124 0.876 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.033 0.967 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.049 7.829 -7.786 14.930 hybrid contribution -1.029 -0.758 0.877 1.550 sum 9.020 7.071 -6.909 13.383 Atomic orbital electron populations 1.20363 0.82904 1.05119 1.05022 1.26223 1.00394 0.85217 0.98496 1.75013 0.91238 1.24163 1.18537 1.85025 1.23334 1.17462 1.63666 1.75471 1.22800 0.92372 1.14407 1.26385 0.87733 0.98961 1.06135 1.16743 0.85953 0.81341 0.79609 1.90923 1.18731 1.78475 1.46527 1.46655 1.05815 1.06712 1.70883 1.21124 0.81702 0.98608 1.00925 1.20916 0.98696 0.95147 1.01677 1.20500 0.96376 0.95781 1.01370 1.21355 0.93366 0.98636 0.98762 0.89779 1.21395 0.87557 0.97762 0.91852 1.44365 1.02400 1.71311 1.15255 1.18938 0.90169 1.34493 0.92718 0.90671 1.24831 0.96714 1.00953 0.97749 1.69982 1.10665 1.46590 1.28395 0.86262 0.79539 0.77996 0.82294 1.21340 1.21587 1.21203 1.21642 0.89828 1.00246 0.84027 1.21212 0.97047 0.78293 1.00723 0.91793 0.88685 0.89784 0.87608 0.92528 0.88503 0.91307 0.90553 0.91304 0.92358 0.94796 0.96691 0.93654 0.92452 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.26 36.00 0.37 -0.57 16 2 C 0.06 0.90 7.79 -79.33 -0.62 0.28 16 3 N -0.36 -5.04 12.22 33.75 0.41 -4.63 16 4 O 0.32 4.35 11.65 27.27 0.32 4.67 16 5 N -0.32 -4.63 8.78 33.49 0.29 -4.34 16 6 C -0.03 -0.43 7.09 -80.07 -0.57 -1.00 16 7 C 0.58 10.93 6.84 -12.13 -0.08 10.84 16 8 O -0.48 -10.35 13.14 5.37 0.07 -10.28 16 9 N -0.57 -10.01 3.09 -172.07 -0.53 -10.54 16 10 C 0.10 1.41 5.33 -6.34 -0.03 1.38 16 11 C -0.13 -1.60 5.75 -28.80 -0.17 -1.76 16 12 C -0.10 -1.32 5.19 -28.72 -0.15 -1.47 16 13 C -0.10 -1.72 3.08 -91.50 -0.28 -2.00 16 14 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 15 C 0.14 2.90 6.65 -3.19 -0.02 2.88 16 16 N -0.61 -15.70 3.39 -171.74 -0.58 -16.28 16 17 C -0.23 -6.65 10.26 -15.06 -0.15 -6.80 16 18 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 19 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 20 N -0.91 -27.19 10.26 55.49 0.57 -26.62 16 21 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 C 0.17 4.17 4.14 -3.72 -0.02 4.16 16 26 C 0.13 2.52 3.10 -69.41 -0.22 2.31 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.11 1.42 7.24 -51.93 -0.38 1.04 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 1.40 4.69 -52.53 -0.25 1.15 16 33 H 0.07 0.97 6.98 -51.93 -0.36 0.61 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.02 0.32 6.68 -51.93 -0.35 -0.03 16 39 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.06 1.62 7.36 -51.92 -0.38 1.24 16 41 H 0.08 2.16 4.58 -51.93 -0.24 1.92 16 LS Contribution 321.26 15.07 4.84 4.84 Total: -1.00 -31.76 321.26 -6.96 -38.72 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -5.30 Total: -0.92 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -2.03 Total: 7.99 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: 0.16 Total: -62.41 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: 0.39 Total: -5.61 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.76 -6.96 -38.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050214031.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.131 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds