Wall clock time and date at job start Tue Mar 31 2020 08:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30648 * 128.64190 * 2 1 4 4 O 1.20836 * 109.61626 * 180.02562 * 3 2 1 5 5 N 1.20898 * 115.91202 * 359.69215 * 4 3 2 6 6 C 1.31599 * 109.17762 * 0.50000 * 5 4 3 7 7 C 1.48283 * 128.71267 * 179.82651 * 6 5 4 8 8 O 1.21495 * 120.00032 * 185.59274 * 7 6 5 9 9 N 1.34777 * 119.99661 * 5.58651 * 7 6 5 10 10 C 1.44507 * 116.63397 * 355.21993 * 9 7 6 11 11 C 1.50533 * 112.65481 * 154.85229 * 10 9 7 12 12 C 1.51335 * 112.60075 * 42.37071 * 11 10 9 13 13 C 1.50709 * 113.44966 * 305.10638 * 12 11 10 14 14 H 1.09003 * 109.33172 * 169.11505 * 13 12 11 15 15 C 1.54186 * 110.50457 * 289.43872 * 13 12 11 16 16 N 1.46919 * 106.26186 * 151.08530 * 15 13 12 17 17 C 1.36940 * 125.37416 * 162.13329 * 16 15 13 18 18 H 1.07998 * 120.00080 * 0.02562 * 17 16 15 19 19 C 1.38819 * 120.00105 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99918 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99944 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47236 * 59.99850 * 21 19 17 23 23 H 1.48496 * 109.46947 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47260 * 300.00028 * 21 19 17 25 25 C 1.46810 * 109.25206 * 342.15313 * 16 15 13 26 26 C 1.44104 * 116.62696 * 175.19516 * 9 7 6 27 27 H 1.08992 * 108.46021 * 74.38005 * 26 9 7 28 28 H 1.09007 * 109.47319 * 269.97287 * 1 2 3 29 29 H 1.08998 * 109.47459 * 29.96993 * 1 2 3 30 30 H 1.08996 * 109.47432 * 149.97808 * 1 2 3 31 31 H 1.08997 * 108.84641 * 275.39615 * 10 9 7 32 32 H 1.08994 * 108.84568 * 33.86501 * 10 9 7 33 33 H 1.08997 * 108.22385 * 281.84905 * 11 10 9 34 34 H 1.08997 * 109.10245 * 163.49781 * 11 10 9 35 35 H 1.08996 * 108.66714 * 184.11723 * 12 11 10 36 36 H 1.09002 * 108.66433 * 66.09604 * 12 11 10 37 37 H 1.08994 * 110.09585 * 270.28968 * 15 13 12 38 38 H 1.09004 * 110.09409 * 31.82686 * 15 13 12 39 39 H 0.97001 * 119.99949 * 180.02562 * 20 19 17 40 40 H 1.09010 * 109.84071 * 120.40505 * 25 16 15 41 41 H 1.08994 * 109.84708 * 241.31146 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0204 0.0000 4 8 3.4651 0.6265 -0.0005 5 7 3.6101 -0.5737 0.0049 6 6 2.4280 -1.1520 -0.0006 7 6 2.1033 -2.5988 -0.0008 8 8 0.9491 -2.9624 -0.1090 9 7 3.0887 -3.5105 0.1189 10 6 4.4418 -3.0035 0.1356 11 6 5.3970 -3.9236 0.8477 12 6 5.1686 -5.3793 0.5026 13 6 3.7534 -5.8379 0.7438 14 1 3.6125 -6.8230 0.2988 15 6 3.4610 -5.9155 2.2556 16 7 2.0214 -5.6658 2.4096 17 6 1.2771 -5.9752 3.5167 18 1 1.7467 -6.4418 4.3699 19 6 -0.0811 -5.6891 3.5421 20 7 -0.6535 -5.1208 2.5020 21 14 -1.0965 -6.1118 5.0519 22 1 -0.5553 -5.3888 6.2308 23 1 -2.5076 -5.7071 4.8285 24 1 -1.0335 -7.5751 5.2970 25 6 1.5067 -5.0326 1.1892 26 6 2.6838 -4.8900 0.2176 27 1 2.3630 -5.2269 -0.7681 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5133 30 1 -0.3634 -0.8897 -0.5141 31 1 4.7825 -2.8754 -0.8918 32 1 4.4481 -2.0331 0.6317 33 1 5.2639 -3.7887 1.9210 34 1 6.4186 -3.6524 0.5818 35 1 5.8408 -5.9902 1.1050 36 1 5.4099 -5.5304 -0.5496 37 1 3.7121 -6.9058 2.6353 38 1 4.0329 -5.1549 2.7872 39 1 -1.6024 -4.9206 2.5199 40 1 0.7272 -5.6553 0.7499 41 1 1.1041 -4.0476 1.4249 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050214031.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:32 Heat of formation + Delta-G solvation = 114.710027 kcal Electronic energy + Delta-G solvation = -26814.836048 eV Core-core repulsion = 23122.150414 eV Total energy + Delta-G solvation = -3692.685634 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.98990 -42.15528 -39.38045 -37.32215 -36.29364 -35.84052 -34.64400 -33.85941 -31.55107 -30.49149 -29.13870 -27.39719 -26.94261 -25.49353 -23.71982 -23.39454 -22.87399 -21.41444 -20.18968 -19.49042 -19.15098 -18.66267 -18.15619 -17.53614 -17.03754 -16.24282 -15.88698 -15.73106 -15.60001 -15.26118 -15.05852 -14.55887 -14.42777 -14.34950 -14.16095 -13.82076 -13.80496 -13.26009 -13.03238 -12.98248 -12.91447 -12.66741 -12.34299 -12.30016 -12.14261 -12.04297 -11.76483 -11.56772 -11.51067 -11.38375 -11.36020 -10.98063 -10.61800 -9.61661 -8.83525 -7.78713 -5.17647 -0.38045 0.20720 1.42761 1.44687 1.46701 1.53200 1.84216 2.24979 2.38071 2.49518 2.72414 3.33722 3.36588 3.54907 3.64404 3.72987 3.85230 3.96061 3.98059 4.06177 4.07558 4.52933 4.53298 4.54223 4.64077 4.65581 4.68073 4.81968 4.88461 4.98424 5.05749 5.10670 5.15359 5.31728 5.39596 5.46136 5.47748 5.73846 5.93001 6.14310 6.26091 6.87308 7.12434 7.34450 7.81395 8.43901 9.27781 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.006101 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.779717 B = 4588.071471 C = 6121.058423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.061 3.939 3 N -0.358 5.358 4 O 0.347 5.653 5 N -0.309 5.309 6 C -0.050 4.050 7 C 0.574 3.426 8 O -0.518 6.518 9 N -0.567 5.567 10 C 0.093 3.907 11 C -0.124 4.124 12 C -0.098 4.098 13 C -0.088 4.088 14 H 0.094 0.906 15 C 0.135 3.865 16 N -0.629 5.629 17 C -0.249 4.249 18 H 0.081 0.919 19 C -0.065 4.065 20 N -0.939 5.939 21 Si 0.976 3.024 22 H -0.279 1.279 23 H -0.295 1.295 24 H -0.275 1.275 25 C 0.180 3.820 26 C 0.140 3.860 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.019 0.981 39 H 0.244 0.756 40 H 0.008 0.992 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.695 7.835 -7.943 16.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.104 4.104 3 N -0.084 5.084 4 O 0.121 5.879 5 N -0.031 5.031 6 C -0.214 4.214 7 C 0.358 3.642 8 O -0.392 6.392 9 N -0.299 5.299 10 C -0.028 4.028 11 C -0.161 4.161 12 C -0.136 4.136 13 C -0.108 4.108 14 H 0.112 0.888 15 C 0.010 3.990 16 N -0.356 5.356 17 C -0.378 4.378 18 H 0.099 0.901 19 C -0.258 4.258 20 N -0.587 5.587 21 Si 0.804 3.196 22 H -0.205 1.205 23 H -0.221 1.221 24 H -0.201 1.201 25 C 0.055 3.945 26 C 0.036 3.964 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.133 0.867 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.069 0.931 34 H 0.135 0.865 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.037 0.963 39 H 0.054 0.946 40 H 0.026 0.974 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 12.867 8.274 -7.937 17.234 hybrid contribution -1.822 -0.851 0.935 2.218 sum 11.045 7.422 -7.002 15.037 Atomic orbital electron populations 1.20419 0.81844 1.05853 1.05150 1.26482 1.01187 0.84757 0.98009 1.75042 0.91080 1.23629 1.18645 1.85016 1.23249 1.17021 1.62574 1.75459 1.21865 0.92488 1.13280 1.26007 0.88889 0.97972 1.08494 1.17110 0.85644 0.82603 0.78827 1.90904 1.20419 1.79461 1.48456 1.46726 1.07232 1.05808 1.70164 1.21412 0.79998 0.98818 1.02616 1.20977 1.00277 0.94600 1.00276 1.20523 0.93322 0.96149 1.03564 1.21371 0.95322 0.98580 0.95507 0.88776 1.21622 0.84619 0.97953 0.94829 1.44685 1.04692 1.71377 1.14859 1.19358 0.90834 1.33906 0.93735 0.90099 1.25695 0.98002 1.01454 1.00677 1.70262 1.10156 1.47920 1.30335 0.85208 0.77378 0.78131 0.78918 1.20517 1.22134 1.20071 1.21211 0.91170 0.97277 0.84827 1.20866 0.96240 0.80144 0.99127 0.91621 0.88784 0.86690 0.89173 0.90178 0.88804 0.93120 0.86479 0.89060 0.89707 0.94066 0.96336 0.94639 0.97399 0.93804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.87 10.26 71.23 0.73 -1.14 16 2 C 0.06 1.73 7.79 45.17 0.35 2.08 16 3 N -0.36 -9.36 12.22 -51.82 -0.63 -10.00 16 4 O 0.35 8.59 11.65 140.86 1.64 10.23 16 5 N -0.31 -8.28 8.78 -52.08 -0.46 -8.74 16 6 C -0.05 -1.59 7.09 44.29 0.31 -1.28 16 7 C 0.57 22.18 6.84 86.92 0.59 22.78 16 8 O -0.52 -24.05 13.14 -3.70 -0.05 -24.10 16 9 N -0.57 -19.79 3.09 -816.61 -2.52 -22.31 16 10 C 0.09 2.40 5.33 85.95 0.46 2.86 16 11 C -0.12 -2.64 5.75 29.25 0.17 -2.47 16 12 C -0.10 -2.12 5.19 29.31 0.15 -1.97 16 13 C -0.09 -2.83 3.08 -11.37 -0.03 -2.86 16 14 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 15 C 0.13 5.46 6.65 86.70 0.58 6.04 16 16 N -0.63 -33.46 3.39 -697.26 -2.36 -35.83 16 17 C -0.25 -14.45 10.26 84.03 0.86 -13.59 16 18 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 19 C -0.06 -3.81 5.48 84.86 0.47 -3.34 16 20 N -0.94 -59.11 10.26 21.65 0.22 -58.89 16 21 Si 0.98 47.23 29.55 68.60 2.03 49.26 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 24 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 25 C 0.18 9.47 4.14 86.42 0.36 9.83 16 26 C 0.14 5.47 3.10 45.31 0.14 5.61 16 27 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 29 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.09 2.56 7.24 -2.39 -0.02 2.54 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.09 2.50 4.69 -3.51 -0.02 2.49 16 33 H 0.05 1.28 6.98 -2.39 -0.02 1.26 16 34 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.09 1.66 8.11 -2.39 -0.02 1.64 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.02 0.76 6.68 -2.39 -0.02 0.74 16 39 H 0.24 15.10 8.31 -92.71 -0.77 14.33 16 40 H 0.01 0.48 7.36 -2.38 -0.02 0.46 16 41 H 0.04 2.61 4.58 -2.39 -0.01 2.60 16 Total: -1.00 -73.33 321.26 4.06 -69.27 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 1.06 Total: 8.55 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: 5.14 Total: 22.54 kcal Atomic # 7 Polarization: -130.01 SS G_CDS: -5.75 Total: -135.76 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 1.59 Total: -13.86 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -73.33 4.06 -69.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050214031.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.984 kcal (2) G-P(sol) polarization free energy of solvation -73.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds