Wall clock time and date at job start Tue Mar 31 2020 08:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.33219 * 126.01743 * 2 1 4 4 C 1.31539 * 109.75663 * 180.02562 * 3 2 1 5 5 O 1.35210 * 125.48813 * 180.02562 * 4 3 2 6 6 N 1.34946 * 109.01728 * 359.97438 * 4 3 2 7 7 H 0.97001 * 126.54168 * 179.97438 * 6 4 3 8 8 C 1.36722 * 126.01502 * 180.32202 * 2 1 3 9 9 C 1.46374 * 126.82668 * 359.97438 * 8 2 1 10 10 O 1.21732 * 120.00306 * 0.17705 * 9 8 2 11 11 N 1.34775 * 120.00220 * 180.17133 * 9 8 2 12 12 C 1.47392 * 135.84818 * 359.63535 * 11 9 8 13 13 C 1.52073 * 87.41040 * 154.38532 * 12 11 9 14 14 C 1.47388 * 135.85809 * 179.97438 * 11 9 8 15 15 C 1.53516 * 117.21397 * 267.27682 * 13 12 11 16 16 C 1.54623 * 102.70450 * 262.92981 * 15 13 12 17 17 N 1.47151 * 107.37851 * 339.38690 * 16 15 13 18 18 C 1.36940 * 125.58088 * 179.07067 * 17 16 15 19 19 H 1.07997 * 119.99669 * 180.02562 * 18 17 16 20 20 C 1.38810 * 119.99922 * 0.02562 * 18 17 16 21 21 N 1.31618 * 120.00218 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99999 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46808 * 89.99843 * 22 20 18 24 24 H 1.48497 * 109.47064 * 210.00092 * 22 20 18 25 25 H 1.48496 * 109.47107 * 330.00303 * 22 20 18 26 26 C 1.47755 * 108.83713 * 359.08212 * 17 16 15 27 27 H 1.09002 * 109.47500 * 89.96803 * 1 2 3 28 28 H 1.08993 * 109.46853 * 209.97369 * 1 2 3 29 29 H 1.09005 * 109.46632 * 329.96926 * 1 2 3 30 30 H 0.96695 * 114.00069 * 269.95372 * 5 4 3 31 31 H 1.09006 * 113.54289 * 268.99441 * 12 11 9 32 32 H 1.08999 * 113.54652 * 39.67662 * 12 11 9 33 33 H 1.09003 * 113.54550 * 320.32760 * 14 11 9 34 34 H 1.09006 * 113.54432 * 90.93047 * 14 11 9 35 35 H 1.09003 * 110.76301 * 21.23507 * 15 13 12 36 36 H 1.09001 * 110.76100 * 144.62468 * 15 13 12 37 37 H 1.09005 * 109.86470 * 98.83028 * 16 15 13 38 38 H 1.08992 * 109.86767 * 219.93356 * 16 15 13 39 39 H 0.97003 * 120.00396 * 180.02562 * 21 20 18 40 40 H 1.09000 * 110.40750 * 263.50344 * 26 17 16 41 41 H 1.09001 * 110.40118 * 141.08531 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2904 1.0775 0.0000 4 6 3.5532 0.7092 -0.0006 5 8 4.6150 1.5463 -0.0002 6 7 3.6181 -0.6387 -0.0004 7 1 4.4243 -1.1781 -0.0010 8 6 2.3110 -1.1059 -0.0062 9 6 1.8792 -2.5044 -0.0136 10 8 0.6923 -2.7751 -0.0178 11 7 2.7956 -3.4927 -0.0157 12 6 4.2675 -3.5701 -0.0189 13 6 4.1284 -4.9345 0.6380 14 6 2.7621 -4.9662 -0.0219 15 6 4.1623 -4.9819 2.1720 16 6 5.6354 -5.3467 2.4684 17 7 6.1901 -5.9591 1.2508 18 6 7.4759 -6.4046 1.0977 19 1 7.7882 -6.8408 0.1603 20 6 8.3778 -6.2957 2.1472 21 7 7.9970 -5.7646 3.2897 22 14 10.1320 -6.9028 1.9382 23 1 10.9798 -5.7981 1.4222 24 1 10.6575 -7.3590 3.2500 25 1 10.1530 -8.0337 0.9761 26 6 5.1327 -6.0142 0.2202 27 1 -0.3634 0.0006 -1.0277 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5143 30 1 4.9241 1.7898 -0.8835 31 1 4.6992 -3.6103 -1.0190 32 1 4.7441 -2.8250 0.6181 33 1 1.9818 -5.3867 0.6126 34 1 2.7706 -5.3977 -1.0229 35 1 3.9128 -4.0085 2.5943 36 1 3.4899 -5.7522 2.5498 37 1 6.1967 -4.4465 2.7190 38 1 5.6823 -6.0565 3.2943 39 1 8.6273 -5.6881 4.0231 40 1 4.6568 -6.9948 0.2161 41 1 5.5473 -5.7880 -0.7621 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072836670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:14 Heat of formation + Delta-G solvation = 58.995493 kcal Electronic energy + Delta-G solvation = -25431.764330 eV Core-core repulsion = 21736.662733 eV Total energy + Delta-G solvation = -3695.101597 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.47495 -40.70440 -38.41586 -37.54631 -35.84210 -33.56972 -32.29123 -30.98575 -29.73777 -28.92379 -27.18374 -26.31930 -25.65023 -23.90042 -22.73001 -21.18857 -20.40791 -19.97523 -19.09614 -18.48872 -17.55838 -16.91107 -16.48750 -16.14903 -15.97896 -15.39588 -14.89704 -14.54488 -14.47554 -13.89994 -13.55598 -13.39909 -13.19202 -12.79602 -12.60180 -12.56469 -12.39501 -12.18956 -12.08768 -11.96211 -11.13930 -11.02491 -10.82170 -10.63162 -10.50660 -10.31868 -10.26688 -10.19363 -9.98923 -9.87137 -9.71812 -8.89293 -8.70430 -8.48384 -6.95711 -5.81586 -3.16105 0.98576 2.16895 2.46842 2.67406 3.17692 3.32677 3.38391 3.40472 3.60069 4.24292 4.38598 4.46803 4.62805 4.77450 4.88877 5.05789 5.26521 5.33554 5.38204 5.40692 5.52889 5.62024 5.64338 5.67159 5.69651 5.81037 5.88760 5.99580 6.09925 6.29663 6.32245 6.37486 6.43053 6.51144 6.57069 7.29322 7.44379 7.48912 7.52318 7.62284 7.71406 8.01115 8.13606 9.10593 9.70661 10.35374 11.29807 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.018888 B = 0.003675 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.033473 B = 7618.184412 C = 8614.118093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.110 3.890 3 N -0.489 5.489 4 C 0.410 3.590 5 O -0.440 6.440 6 N -0.553 5.553 7 H 0.424 0.576 8 C -0.075 4.075 9 C 0.623 3.377 10 O -0.528 6.528 11 N -0.644 5.644 12 C 0.110 3.890 13 C -0.102 4.102 14 C 0.124 3.876 15 C -0.118 4.118 16 C 0.179 3.821 17 N -0.605 5.605 18 C -0.232 4.232 19 H 0.079 0.921 20 C -0.006 4.006 21 N -0.921 5.921 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.154 3.846 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.407 0.593 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.253 0.747 40 H 0.029 0.971 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.746 9.020 -8.665 15.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.025 4.025 3 N -0.221 5.221 4 C 0.108 3.892 5 O -0.241 6.241 6 N -0.173 5.173 7 H 0.266 0.734 8 C -0.190 4.190 9 C 0.413 3.587 10 O -0.405 6.405 11 N -0.378 5.378 12 C -0.013 4.013 13 C -0.103 4.103 14 C 0.001 3.999 15 C -0.156 4.156 16 C 0.054 3.946 17 N -0.331 5.331 18 C -0.360 4.360 19 H 0.097 0.903 20 C -0.202 4.202 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.027 3.973 27 H 0.095 0.905 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.265 0.735 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.047 0.953 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.563 9.869 -7.914 16.481 hybrid contribution 2.203 -1.128 -0.540 2.533 sum -8.360 8.742 -8.454 14.757 Atomic orbital electron populations 1.20329 0.85914 1.03954 1.03230 1.20930 0.96857 0.85804 0.98919 1.70278 0.98575 1.30305 1.22908 1.20190 0.87412 0.78813 1.02762 1.84857 1.43283 1.61531 1.34419 1.44044 1.09159 1.07995 1.56105 0.73375 1.20755 0.83024 0.94898 1.20301 1.16113 0.84564 0.81452 0.76562 1.90828 1.15217 1.82517 1.51912 1.49729 1.07790 1.07665 1.72663 1.23024 0.79490 0.97959 1.00816 1.22163 0.94968 0.95374 0.97834 1.22796 0.97438 0.78628 1.00994 1.22493 1.00993 1.00833 0.91293 1.21233 0.86292 0.97681 0.89370 1.44545 1.07233 1.71865 1.09496 1.19039 0.84808 1.33652 0.98496 0.90348 1.24803 0.98430 1.01047 0.95966 1.69952 1.34026 1.49497 1.03322 0.86126 0.84391 0.78339 0.76924 1.21608 1.21633 1.20648 1.21144 0.88716 0.94213 0.93249 0.90519 0.88975 0.90823 0.73543 0.89041 0.90939 0.89925 0.89399 0.92182 0.91451 0.93583 0.93626 0.93658 0.95297 0.93910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 9.86 36.01 0.36 -0.52 16 2 C 0.11 1.51 7.14 -82.54 -0.59 0.92 16 3 N -0.49 -6.81 11.22 -10.83 -0.12 -6.93 16 4 C 0.41 4.97 9.43 -89.59 -0.84 4.13 16 5 O -0.44 -4.15 13.62 -17.33 -0.24 -4.39 16 6 N -0.55 -6.52 6.02 -10.91 -0.07 -6.58 16 7 H 0.42 4.36 6.06 -40.82 -0.25 4.11 16 8 C -0.07 -1.03 7.04 -81.98 -0.58 -1.60 16 9 C 0.62 9.25 8.03 -12.99 -0.10 9.15 16 10 O -0.53 -8.91 15.57 5.16 0.08 -8.83 16 11 N -0.64 -8.72 3.70 -187.40 -0.69 -9.41 16 12 C 0.11 1.41 6.68 -7.33 -0.05 1.37 16 13 C -0.10 -1.51 1.06 -155.23 -0.16 -1.67 16 14 C 0.12 1.59 8.02 -7.49 -0.06 1.53 16 15 C -0.12 -2.01 6.40 -25.61 -0.16 -2.18 16 16 C 0.18 4.01 5.39 -2.83 -0.02 3.99 16 17 N -0.60 -14.04 3.41 -170.54 -0.58 -14.62 16 18 C -0.23 -6.02 10.28 -15.06 -0.15 -6.18 16 19 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 20 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 21 N -0.92 -25.84 10.30 55.49 0.57 -25.27 16 22 Si 0.91 21.12 29.55 -169.99 -5.02 16.09 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 C 0.15 2.72 6.70 -3.22 -0.02 2.70 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.09 1.13 6.48 -51.93 -0.34 0.80 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.41 1.54 9.06 45.56 0.41 1.95 16 31 H 0.09 1.03 8.06 -51.93 -0.42 0.61 16 32 H 0.07 0.94 6.51 -51.93 -0.34 0.60 16 33 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.05 1.15 7.39 -51.93 -0.38 0.77 16 38 H 0.05 1.16 7.49 -51.93 -0.39 0.77 16 39 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.04 0.71 8.00 -51.93 -0.42 0.30 16 LS Contribution 338.34 15.07 5.10 5.10 Total: -1.00 -32.78 338.34 -8.07 -40.85 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.62 Total: 2.62 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: -2.48 Total: 11.37 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -0.89 Total: -62.81 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.16 Total: -13.22 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.78 -8.07 -40.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072836670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.845 kcal (2) G-P(sol) polarization free energy of solvation -32.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds