Wall clock time and date at job start Tue Mar 31 2020 08:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.33219 * 126.01743 * 2 1 4 4 C 1.31539 * 109.75663 * 180.02562 * 3 2 1 5 5 O 1.35210 * 125.48813 * 180.02562 * 4 3 2 6 6 N 1.34946 * 109.01728 * 359.97438 * 4 3 2 7 7 H 0.97001 * 126.54168 * 179.97438 * 6 4 3 8 8 C 1.36722 * 126.01502 * 180.32202 * 2 1 3 9 9 C 1.46374 * 126.82668 * 359.97438 * 8 2 1 10 10 O 1.21732 * 120.00306 * 0.17705 * 9 8 2 11 11 N 1.34775 * 120.00220 * 180.17133 * 9 8 2 12 12 C 1.47392 * 135.84818 * 359.63535 * 11 9 8 13 13 C 1.52073 * 87.41040 * 154.38532 * 12 11 9 14 14 C 1.47388 * 135.85809 * 179.97438 * 11 9 8 15 15 C 1.53516 * 117.21397 * 267.27682 * 13 12 11 16 16 C 1.54623 * 102.70450 * 262.92981 * 15 13 12 17 17 N 1.47151 * 107.37851 * 339.38690 * 16 15 13 18 18 C 1.36940 * 125.58088 * 179.07067 * 17 16 15 19 19 H 1.07997 * 119.99669 * 180.02562 * 18 17 16 20 20 C 1.38810 * 119.99922 * 0.02562 * 18 17 16 21 21 N 1.31618 * 120.00218 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99999 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46808 * 89.99843 * 22 20 18 24 24 H 1.48497 * 109.47064 * 210.00092 * 22 20 18 25 25 H 1.48496 * 109.47107 * 330.00303 * 22 20 18 26 26 C 1.47755 * 108.83713 * 359.08212 * 17 16 15 27 27 H 1.09002 * 109.47500 * 89.96803 * 1 2 3 28 28 H 1.08993 * 109.46853 * 209.97369 * 1 2 3 29 29 H 1.09005 * 109.46632 * 329.96926 * 1 2 3 30 30 H 0.96695 * 114.00069 * 269.95372 * 5 4 3 31 31 H 1.09006 * 113.54289 * 268.99441 * 12 11 9 32 32 H 1.08999 * 113.54652 * 39.67662 * 12 11 9 33 33 H 1.09003 * 113.54550 * 320.32760 * 14 11 9 34 34 H 1.09006 * 113.54432 * 90.93047 * 14 11 9 35 35 H 1.09003 * 110.76301 * 21.23507 * 15 13 12 36 36 H 1.09001 * 110.76100 * 144.62468 * 15 13 12 37 37 H 1.09005 * 109.86470 * 98.83028 * 16 15 13 38 38 H 1.08992 * 109.86767 * 219.93356 * 16 15 13 39 39 H 0.97003 * 120.00396 * 180.02562 * 21 20 18 40 40 H 1.09000 * 110.40750 * 263.50344 * 26 17 16 41 41 H 1.09001 * 110.40118 * 141.08531 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2904 1.0775 0.0000 4 6 3.5532 0.7092 -0.0006 5 8 4.6150 1.5463 -0.0002 6 7 3.6181 -0.6387 -0.0004 7 1 4.4243 -1.1781 -0.0010 8 6 2.3110 -1.1059 -0.0062 9 6 1.8792 -2.5044 -0.0136 10 8 0.6923 -2.7751 -0.0178 11 7 2.7956 -3.4927 -0.0157 12 6 4.2675 -3.5701 -0.0189 13 6 4.1284 -4.9345 0.6380 14 6 2.7621 -4.9662 -0.0219 15 6 4.1623 -4.9819 2.1720 16 6 5.6354 -5.3467 2.4684 17 7 6.1901 -5.9591 1.2508 18 6 7.4759 -6.4046 1.0977 19 1 7.7882 -6.8408 0.1603 20 6 8.3778 -6.2957 2.1472 21 7 7.9970 -5.7646 3.2897 22 14 10.1320 -6.9028 1.9382 23 1 10.9798 -5.7981 1.4222 24 1 10.6575 -7.3590 3.2500 25 1 10.1530 -8.0337 0.9761 26 6 5.1327 -6.0142 0.2202 27 1 -0.3634 0.0006 -1.0277 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5143 30 1 4.9241 1.7898 -0.8835 31 1 4.6992 -3.6103 -1.0190 32 1 4.7441 -2.8250 0.6181 33 1 1.9818 -5.3867 0.6126 34 1 2.7706 -5.3977 -1.0229 35 1 3.9128 -4.0085 2.5943 36 1 3.4899 -5.7522 2.5498 37 1 6.1967 -4.4465 2.7190 38 1 5.6823 -6.0565 3.2943 39 1 8.6273 -5.6881 4.0231 40 1 4.6568 -6.9948 0.2161 41 1 5.5473 -5.7880 -0.7621 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072836670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:14 Heat of formation + Delta-G solvation = 32.567456 kcal Electronic energy + Delta-G solvation = -25432.910336 eV Core-core repulsion = 21736.662733 eV Total energy + Delta-G solvation = -3696.247603 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.43470 -41.86771 -39.57091 -38.40099 -37.37556 -34.60022 -34.00383 -32.01456 -31.23472 -30.37250 -28.35148 -27.35731 -27.08445 -25.49772 -23.71316 -22.25966 -22.09166 -20.92745 -20.20919 -19.61542 -18.64792 -18.53908 -17.51167 -17.24850 -17.05790 -16.70966 -16.44913 -16.01344 -15.60748 -15.43248 -14.64580 -14.43598 -14.31859 -14.07116 -13.75864 -13.73792 -13.64114 -13.39451 -13.35759 -13.05854 -12.88063 -12.78379 -12.32061 -12.04016 -11.97741 -11.85887 -11.73187 -11.49862 -11.26770 -11.23668 -10.98473 -10.68221 -9.97548 -9.46396 -8.86769 -7.82663 -5.17426 0.00888 1.27325 1.48643 1.49070 1.49936 1.58178 1.63231 2.11342 2.51338 2.74388 3.15896 3.31920 3.42021 3.53573 3.69475 3.80020 3.96903 3.99465 4.16610 4.28058 4.36059 4.44333 4.60057 4.61613 4.66569 4.81799 4.82883 4.88984 4.94364 4.97575 5.00122 5.13055 5.18202 5.43212 5.50028 5.65133 5.70748 5.78295 6.20913 6.46121 6.57202 6.63320 6.92074 7.12268 7.80145 8.43774 9.27604 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.018888 B = 0.003675 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.033473 B = 7618.184412 C = 8614.118093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.102 3.898 3 N -0.514 5.514 4 C 0.421 3.579 5 O -0.442 6.442 6 N -0.546 5.546 7 H 0.430 0.570 8 C -0.092 4.092 9 C 0.623 3.377 10 O -0.553 6.553 11 N -0.643 5.643 12 C 0.115 3.885 13 C -0.097 4.097 14 C 0.132 3.868 15 C -0.103 4.103 16 C 0.190 3.810 17 N -0.625 5.625 18 C -0.235 4.235 19 H 0.088 0.912 20 C -0.066 4.066 21 N -0.953 5.953 22 Si 0.973 3.027 23 H -0.286 1.286 24 H -0.301 1.301 25 H -0.268 1.268 26 C 0.152 3.848 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.432 0.568 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.011 0.989 38 H 0.003 0.997 39 H 0.244 0.756 40 H 0.037 0.963 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.000 9.330 -10.753 17.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.033 4.033 3 N -0.246 5.246 4 C 0.119 3.881 5 O -0.247 6.247 6 N -0.167 5.167 7 H 0.274 0.726 8 C -0.206 4.206 9 C 0.414 3.586 10 O -0.433 6.433 11 N -0.376 5.376 12 C -0.008 4.008 13 C -0.099 4.099 14 C 0.010 3.990 15 C -0.142 4.142 16 C 0.064 3.936 17 N -0.351 5.351 18 C -0.364 4.364 19 H 0.106 0.894 20 C -0.259 4.259 21 N -0.602 5.602 22 Si 0.802 3.198 23 H -0.213 1.213 24 H -0.228 1.228 25 H -0.193 1.193 26 C 0.027 3.973 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.295 0.705 31 H 0.135 0.865 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.134 0.866 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.029 0.971 38 H 0.022 0.978 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.808 10.168 -10.064 17.930 hybrid contribution 2.311 -1.194 0.085 2.602 sum -8.497 8.975 -9.978 15.884 Atomic orbital electron populations 1.20343 0.84908 1.03903 1.03956 1.21295 0.97769 0.85866 0.98332 1.70289 0.99396 1.30659 1.24273 1.20296 0.87643 0.79136 1.01036 1.84822 1.42283 1.60853 1.36778 1.43942 1.08853 1.07959 1.55904 0.72605 1.20627 0.83782 0.94482 1.21755 1.16189 0.84300 0.81897 0.76213 1.90812 1.16194 1.82966 1.53280 1.49669 1.07892 1.07862 1.72227 1.23103 0.79252 0.96453 1.01943 1.21963 0.95994 0.95914 0.95983 1.22846 0.95592 0.78350 1.02219 1.22269 0.97137 1.01240 0.93520 1.20905 0.89279 0.94972 0.88410 1.44819 1.07659 1.71564 1.11101 1.19468 0.86096 1.32296 0.98504 0.89397 1.25582 1.02105 1.02203 0.95997 1.70179 1.34696 1.51393 1.03949 0.85150 0.80169 0.78091 0.76360 1.21347 1.22798 1.19263 1.21319 0.87928 0.95492 0.92576 0.89364 0.90013 0.89760 0.70522 0.86450 0.91090 0.89760 0.86623 0.91637 0.90556 0.97057 0.97829 0.94664 0.94500 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.61 9.86 71.24 0.70 -0.91 16 2 C 0.10 2.69 7.14 42.00 0.30 2.99 16 3 N -0.51 -13.58 11.22 -301.65 -3.38 -16.97 16 4 C 0.42 9.45 9.43 179.99 1.70 11.15 16 5 O -0.44 -7.35 13.62 -84.92 -1.16 -8.51 16 6 N -0.55 -11.87 6.02 -300.13 -1.81 -13.68 16 7 H 0.43 7.95 6.06 -92.71 -0.56 7.39 16 8 C -0.09 -2.38 7.04 39.80 0.28 -2.10 16 9 C 0.62 17.44 8.03 86.36 0.69 18.14 16 10 O -0.55 -17.99 15.57 -4.45 -0.07 -18.06 16 11 N -0.64 -15.75 3.70 -865.01 -3.20 -18.94 16 12 C 0.11 2.64 6.68 83.76 0.56 3.20 16 13 C -0.10 -2.65 1.06 -52.63 -0.06 -2.70 16 14 C 0.13 2.95 8.02 83.66 0.67 3.62 16 15 C -0.10 -3.45 6.40 31.32 0.20 -3.25 16 16 C 0.19 8.70 5.39 86.81 0.47 9.17 16 17 N -0.62 -28.80 3.41 -693.45 -2.36 -31.16 16 18 C -0.23 -12.11 10.28 84.03 0.86 -11.25 16 19 H 0.09 4.26 7.83 -2.91 -0.02 4.24 16 20 C -0.07 -3.57 5.49 84.86 0.47 -3.10 16 21 N -0.95 -55.33 10.30 21.65 0.22 -55.10 16 22 Si 0.97 43.71 29.55 68.60 2.03 45.73 16 23 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 24 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 26 C 0.15 5.03 6.70 86.23 0.58 5.61 16 27 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.08 1.97 6.48 -2.39 -0.02 1.95 16 29 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.43 2.10 9.06 -74.06 -0.67 1.43 16 31 H 0.12 2.16 8.06 -2.38 -0.02 2.14 16 32 H 0.07 1.68 6.51 -2.39 -0.02 1.67 16 33 H 0.08 1.92 8.13 -2.39 -0.02 1.90 16 34 H 0.12 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.06 2.12 8.07 -2.39 -0.02 2.10 16 36 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.01 0.58 7.39 -2.38 -0.02 0.57 16 38 H 0.00 0.18 7.49 -2.39 -0.02 0.17 16 39 H 0.24 13.98 8.31 -92.71 -0.77 13.21 16 40 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.06 1.83 8.00 -2.39 -0.02 1.81 16 Total: -1.00 -71.98 338.34 -2.45 -74.43 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -0.15 Total: 11.69 kcal Atomic # 6 Polarization: 23.14 SS G_CDS: 7.42 Total: 30.56 kcal Atomic # 7 Polarization: -125.32 SS G_CDS: -10.53 Total: -135.85 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -1.23 Total: -26.56 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -71.98 -2.45 -74.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072836670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.001 kcal (2) G-P(sol) polarization free energy of solvation -71.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds