Wall clock time and date at job start Tue Mar 31 2020 09:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47332 * 2 1 4 4 H 1.09003 * 109.87577 * 53.86407 * 3 2 1 5 5 C 1.54322 * 109.88341 * 292.84916 * 3 2 1 6 6 H 1.09007 * 110.71867 * 336.75122 * 5 3 2 7 7 N 1.46502 * 110.72383 * 100.02569 * 5 3 2 8 8 C 1.34767 * 120.00022 * 205.00268 * 7 5 3 9 9 O 1.21578 * 120.00542 * 359.97438 * 8 7 5 10 10 C 1.47696 * 120.00065 * 180.02562 * 8 7 5 11 11 C 1.39656 * 120.16368 * 359.97438 * 10 8 7 12 12 C 1.37856 * 119.87693 * 179.97438 * 11 10 8 13 13 C 1.38455 * 120.21872 * 0.02562 * 12 11 10 14 14 C 1.38196 * 120.34186 * 359.97438 * 13 12 11 15 15 C 1.38324 * 120.11619 * 359.70146 * 14 13 12 16 16 F 1.35103 * 120.11290 * 180.29636 * 15 14 13 17 17 C 1.55395 * 102.82877 * 218.48426 * 5 3 2 18 18 C 1.54915 * 101.66772 * 35.33154 * 17 5 3 19 19 N 1.47020 * 109.88141 * 174.88038 * 3 2 1 20 20 C 1.36938 * 125.64666 * 298.39123 * 19 3 2 21 21 H 1.08001 * 120.00393 * 345.37218 * 20 19 3 22 22 C 1.38815 * 120.00081 * 165.36920 * 20 19 3 23 23 N 1.31618 * 119.99701 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00279 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47096 * 90.00018 * 24 22 20 26 26 H 1.48497 * 109.47333 * 210.00226 * 24 22 20 27 27 H 1.48507 * 109.47287 * 330.00178 * 24 22 20 28 28 H 1.09001 * 109.47185 * 305.52555 * 1 2 3 29 29 H 1.09002 * 109.46679 * 65.52037 * 1 2 3 30 30 H 1.08996 * 109.47408 * 185.52155 * 1 2 3 31 31 H 1.08997 * 109.47042 * 239.99951 * 2 1 3 32 32 H 1.09000 * 109.46796 * 119.99926 * 2 1 3 33 33 H 0.96997 * 119.99670 * 24.99735 * 7 5 3 34 34 H 1.08001 * 120.06478 * 359.95765 * 11 10 8 35 35 H 1.08003 * 119.89151 * 179.97438 * 12 11 10 36 36 H 1.08005 * 119.83062 * 179.97438 * 13 12 11 37 37 H 1.08007 * 119.94716 * 179.97438 * 14 13 12 38 38 H 1.09003 * 110.89273 * 277.26459 * 17 5 3 39 39 H 1.09002 * 111.04346 * 153.47001 * 17 5 3 40 40 H 1.08995 * 110.36695 * 204.23430 * 18 17 5 41 41 H 1.09007 * 110.36356 * 81.91809 * 18 17 5 42 42 H 0.97001 * 120.00119 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5937 1.9934 0.8279 5 6 1.6838 2.1252 -1.3373 6 1 1.5341 1.3828 -2.1214 7 7 0.4963 2.9700 -1.1879 8 6 -0.2740 3.2452 -2.2589 9 8 0.0167 2.7928 -3.3493 10 6 -1.4709 4.0974 -2.1084 11 6 -1.8079 4.6194 -0.8576 12 6 -2.9260 5.4146 -0.7240 13 6 -3.7161 5.6968 -1.8254 14 6 -3.3911 5.1851 -3.0672 15 6 -2.2685 4.3911 -3.2186 16 9 -1.9475 3.8957 -4.4339 17 6 2.9428 2.9874 -1.6308 18 6 4.0756 2.0851 -1.0809 19 7 3.5051 1.4548 0.1234 20 6 4.2210 0.9617 1.1814 21 1 3.7224 0.7353 2.1123 22 6 5.5878 0.7528 1.0576 23 7 6.1956 1.0292 -0.0766 24 14 6.5645 0.0809 2.5011 25 1 6.5835 -1.4026 2.4382 26 1 7.9557 0.5968 2.4405 27 1 5.9309 0.5144 3.7723 28 1 -0.3633 0.5971 0.8364 29 1 -0.3633 0.4259 -0.9353 30 1 -0.3634 -1.0228 0.0989 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.2645 3.3312 -0.3180 34 1 -1.1938 4.4003 0.0034 35 1 -3.1871 5.8180 0.2433 36 1 -4.5910 6.3202 -1.7134 37 1 -4.0121 5.4090 -3.9220 38 1 2.9003 3.9336 -1.0912 39 1 3.0616 3.1551 -2.7012 40 1 4.9459 2.6865 -0.8183 41 1 4.3457 1.3257 -1.8148 42 1 7.1506 0.8829 -0.1634 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087487546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:58 Heat of formation + Delta-G solvation = -32.769480 kcal Electronic energy + Delta-G solvation = -25369.201139 eV Core-core repulsion = 21650.200352 eV Total energy + Delta-G solvation = -3719.000787 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.93931 -40.14267 -38.69384 -37.50265 -34.11188 -32.82723 -32.05792 -31.21754 -30.75751 -28.92269 -26.63466 -24.78011 -23.90539 -22.88556 -22.06908 -20.67999 -20.20291 -19.71115 -18.09971 -17.19108 -16.87280 -16.51698 -15.82443 -15.63860 -15.32343 -14.77574 -14.68017 -14.45616 -13.97405 -13.83738 -13.74818 -13.30343 -13.13702 -12.69618 -12.55216 -12.32186 -12.02004 -11.95309 -11.66126 -11.61949 -11.13204 -10.89107 -10.85638 -10.62840 -10.45959 -10.29231 -10.08417 -9.79318 -9.67107 -9.65984 -9.47135 -9.04168 -8.65282 -8.56479 -6.81775 -5.76402 -3.12958 0.47484 0.85364 2.75921 3.21259 3.38224 3.43513 3.45130 3.54922 3.95999 4.35276 4.45390 4.49499 4.61960 4.90580 4.92154 5.24110 5.34513 5.39535 5.50078 5.54418 5.67013 5.70893 5.75645 5.79804 5.81789 5.86289 5.98021 6.05846 6.22385 6.28228 6.40970 6.45576 6.48485 6.55706 6.67388 6.73304 6.94462 7.13354 7.50202 7.59416 7.67104 7.77957 8.24860 8.34291 9.16859 9.77889 10.45869 11.35524 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.026056 B = 0.003337 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.357881 B = 8388.903015 C = 8605.246748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.034 0.966 5 C 0.137 3.863 6 H 0.096 0.904 7 N -0.706 5.706 8 C 0.553 3.447 9 O -0.527 6.527 10 C -0.167 4.167 11 C -0.058 4.058 12 C -0.140 4.140 13 C -0.069 4.069 14 C -0.167 4.167 15 C 0.157 3.843 16 F -0.115 7.115 17 C -0.156 4.156 18 C 0.174 3.826 19 N -0.594 5.594 20 C -0.229 4.229 21 H 0.075 0.925 22 C -0.003 4.003 23 N -0.916 5.916 24 Si 0.910 3.090 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.281 1.281 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.396 0.604 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.141 0.859 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.028 0.972 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.731 9.310 -1.309 21.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.052 0.948 5 C 0.033 3.967 6 H 0.114 0.886 7 N -0.357 5.357 8 C 0.339 3.661 9 O -0.404 6.404 10 C -0.172 4.172 11 C -0.077 4.077 12 C -0.158 4.158 13 C -0.087 4.087 14 C -0.186 4.186 15 C 0.137 3.863 16 F -0.093 7.093 17 C -0.196 4.196 18 C 0.049 3.951 19 N -0.318 5.318 20 C -0.357 4.357 21 H 0.093 0.907 22 C -0.200 4.200 23 N -0.562 5.562 24 Si 0.740 3.260 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.206 1.206 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.231 0.769 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.159 0.841 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.046 0.954 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.221 8.899 -2.092 21.284 hybrid contribution 0.489 -0.330 0.944 1.113 sum -18.732 8.569 -1.148 20.631 Atomic orbital electron populations 1.21770 0.97283 1.00529 1.00868 1.22024 0.93563 0.99161 1.02462 1.21069 0.87307 0.93423 0.92877 0.94820 1.22196 0.83063 0.92450 0.99008 0.88583 1.45939 1.27347 1.51758 1.10629 1.17953 0.82491 0.80772 0.84844 1.90842 1.71930 1.52097 1.25498 1.20228 0.98621 1.04224 0.94080 1.21295 0.96321 0.94416 0.95643 1.21169 0.95404 0.99676 0.99553 1.21196 0.98897 0.97090 0.91550 1.21177 0.97282 1.00434 0.99713 1.17758 0.93914 0.94359 0.80317 1.91607 1.92082 1.85044 1.40531 1.23478 0.96593 0.99086 1.00464 1.21433 0.92947 0.93106 0.87593 1.44445 0.98470 1.69202 1.19722 1.18932 0.90088 1.36467 0.90236 0.90709 1.24915 0.97109 1.00897 0.97084 1.69928 1.09383 1.52861 1.24008 0.86156 0.79446 0.78833 0.81519 1.21513 1.21688 1.20643 0.93475 0.93373 0.93653 0.92379 0.91596 0.76865 0.84503 0.84668 0.84625 0.84150 0.92041 0.91848 0.90760 0.95369 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.65 37.16 0.36 -1.83 16 2 C -0.13 -2.46 5.43 -26.73 -0.15 -2.61 16 3 C 0.16 3.17 2.91 -66.96 -0.19 2.98 16 4 H 0.03 0.64 7.71 -51.93 -0.40 0.24 16 5 C 0.14 2.49 2.10 -65.97 -0.14 2.35 16 6 H 0.10 1.92 7.18 -51.93 -0.37 1.55 16 7 N -0.71 -10.39 4.92 -52.89 -0.26 -10.65 16 8 C 0.55 8.76 7.77 -12.40 -0.10 8.67 16 9 O -0.53 -10.47 14.99 5.30 0.08 -10.39 16 10 C -0.17 -2.10 5.88 -104.91 -0.62 -2.72 16 11 C -0.06 -0.52 9.54 -39.19 -0.37 -0.90 16 12 C -0.14 -0.97 10.03 -39.64 -0.40 -1.37 16 13 C -0.07 -0.46 10.03 -39.52 -0.40 -0.86 16 14 C -0.17 -1.46 10.01 -39.57 -0.40 -1.86 16 15 C 0.16 1.96 7.29 -38.96 -0.28 1.67 16 16 F -0.11 -1.74 15.55 2.25 0.04 -1.71 16 17 C -0.16 -3.08 6.78 -24.45 -0.17 -3.24 16 18 C 0.17 4.20 5.41 -2.53 -0.01 4.19 16 19 N -0.59 -14.54 3.13 -162.58 -0.51 -15.05 16 20 C -0.23 -6.14 9.71 -15.06 -0.15 -6.28 16 21 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 22 C 0.00 -0.08 5.47 -17.43 -0.10 -0.18 16 23 N -0.92 -26.44 10.57 55.49 0.59 -25.86 16 24 Si 0.91 21.66 29.55 -169.99 -5.02 16.63 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.73 7.48 -51.93 -0.39 0.34 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 1.16 8.02 -51.93 -0.42 0.74 16 32 H 0.07 1.31 7.84 -51.93 -0.41 0.90 16 33 H 0.40 4.72 6.40 -40.82 -0.26 4.46 16 34 H 0.14 0.97 6.41 -52.49 -0.34 0.63 16 35 H 0.14 0.59 8.06 -52.48 -0.42 0.16 16 36 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 37 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.07 1.98 6.93 -51.93 -0.36 1.62 16 41 H 0.03 0.74 8.06 -51.92 -0.42 0.33 16 42 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 LS Contribution 346.95 15.07 5.23 5.23 Total: -1.00 -32.27 346.95 -8.83 -41.10 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.87 Total: 2.68 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -3.10 Total: -1.98 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.18 Total: -51.56 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.39 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.27 -8.83 -41.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087487546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.333 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds