Wall clock time and date at job start Tue Mar 31 2020 09:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47332 * 2 1 4 4 H 1.09003 * 109.87577 * 53.86407 * 3 2 1 5 5 C 1.54322 * 109.88341 * 292.84916 * 3 2 1 6 6 H 1.09007 * 110.71867 * 336.75122 * 5 3 2 7 7 N 1.46502 * 110.72383 * 100.02569 * 5 3 2 8 8 C 1.34767 * 120.00022 * 205.00268 * 7 5 3 9 9 O 1.21578 * 120.00542 * 359.97438 * 8 7 5 10 10 C 1.47696 * 120.00065 * 180.02562 * 8 7 5 11 11 C 1.39656 * 120.16368 * 359.97438 * 10 8 7 12 12 C 1.37856 * 119.87693 * 179.97438 * 11 10 8 13 13 C 1.38455 * 120.21872 * 0.02562 * 12 11 10 14 14 C 1.38196 * 120.34186 * 359.97438 * 13 12 11 15 15 C 1.38324 * 120.11619 * 359.70146 * 14 13 12 16 16 F 1.35103 * 120.11290 * 180.29636 * 15 14 13 17 17 C 1.55395 * 102.82877 * 218.48426 * 5 3 2 18 18 C 1.54915 * 101.66772 * 35.33154 * 17 5 3 19 19 N 1.47020 * 109.88141 * 174.88038 * 3 2 1 20 20 C 1.36938 * 125.64666 * 298.39123 * 19 3 2 21 21 H 1.08001 * 120.00393 * 345.37218 * 20 19 3 22 22 C 1.38815 * 120.00081 * 165.36920 * 20 19 3 23 23 N 1.31618 * 119.99701 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00279 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47096 * 90.00018 * 24 22 20 26 26 H 1.48497 * 109.47333 * 210.00226 * 24 22 20 27 27 H 1.48507 * 109.47287 * 330.00178 * 24 22 20 28 28 H 1.09001 * 109.47185 * 305.52555 * 1 2 3 29 29 H 1.09002 * 109.46679 * 65.52037 * 1 2 3 30 30 H 1.08996 * 109.47408 * 185.52155 * 1 2 3 31 31 H 1.08997 * 109.47042 * 239.99951 * 2 1 3 32 32 H 1.09000 * 109.46796 * 119.99926 * 2 1 3 33 33 H 0.96997 * 119.99670 * 24.99735 * 7 5 3 34 34 H 1.08001 * 120.06478 * 359.95765 * 11 10 8 35 35 H 1.08003 * 119.89151 * 179.97438 * 12 11 10 36 36 H 1.08005 * 119.83062 * 179.97438 * 13 12 11 37 37 H 1.08007 * 119.94716 * 179.97438 * 14 13 12 38 38 H 1.09003 * 110.89273 * 277.26459 * 17 5 3 39 39 H 1.09002 * 111.04346 * 153.47001 * 17 5 3 40 40 H 1.08995 * 110.36695 * 204.23430 * 18 17 5 41 41 H 1.09007 * 110.36356 * 81.91809 * 18 17 5 42 42 H 0.97001 * 120.00119 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5937 1.9934 0.8279 5 6 1.6838 2.1252 -1.3373 6 1 1.5341 1.3828 -2.1214 7 7 0.4963 2.9700 -1.1879 8 6 -0.2740 3.2452 -2.2589 9 8 0.0167 2.7928 -3.3493 10 6 -1.4709 4.0974 -2.1084 11 6 -1.8079 4.6194 -0.8576 12 6 -2.9260 5.4146 -0.7240 13 6 -3.7161 5.6968 -1.8254 14 6 -3.3911 5.1851 -3.0672 15 6 -2.2685 4.3911 -3.2186 16 9 -1.9475 3.8957 -4.4339 17 6 2.9428 2.9874 -1.6308 18 6 4.0756 2.0851 -1.0809 19 7 3.5051 1.4548 0.1234 20 6 4.2210 0.9617 1.1814 21 1 3.7224 0.7353 2.1123 22 6 5.5878 0.7528 1.0576 23 7 6.1956 1.0292 -0.0766 24 14 6.5645 0.0809 2.5011 25 1 6.5835 -1.4026 2.4382 26 1 7.9557 0.5968 2.4405 27 1 5.9309 0.5144 3.7723 28 1 -0.3633 0.5971 0.8364 29 1 -0.3633 0.4259 -0.9353 30 1 -0.3634 -1.0228 0.0989 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.2645 3.3312 -0.3180 34 1 -1.1938 4.4003 0.0034 35 1 -3.1871 5.8180 0.2433 36 1 -4.5910 6.3202 -1.7134 37 1 -4.0121 5.4090 -3.9220 38 1 2.9003 3.9336 -1.0912 39 1 3.0616 3.1551 -2.7012 40 1 4.9459 2.6865 -0.8183 41 1 4.3457 1.3257 -1.8148 42 1 7.1506 0.8829 -0.1634 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087487546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:57 Heat of formation + Delta-G solvation = -52.725859 kcal Electronic energy + Delta-G solvation = -25370.066513 eV Core-core repulsion = 21650.200352 eV Total energy + Delta-G solvation = -3719.866160 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.90227 -41.33081 -39.79476 -38.87625 -35.70184 -34.38904 -33.60923 -32.34339 -31.44381 -30.69092 -28.17045 -26.49835 -25.03279 -23.83265 -23.30078 -22.24360 -21.66921 -21.20153 -19.10025 -18.77945 -18.10049 -17.61437 -17.00545 -16.80303 -16.59138 -16.17857 -15.87691 -15.68944 -15.48998 -15.33013 -15.01186 -14.50065 -14.29331 -14.09966 -13.82257 -13.57716 -13.29975 -13.20995 -12.97894 -12.87312 -12.73467 -12.62168 -12.29616 -12.22227 -12.04919 -11.98958 -11.91693 -11.58390 -11.40853 -11.01019 -10.67918 -10.25516 -9.98739 -9.73447 -8.83652 -7.85192 -5.23648 -0.30177 0.19509 1.47913 1.49639 1.58029 1.78705 1.99237 2.51632 2.71442 3.21656 3.34589 3.47892 3.64760 3.75327 3.83263 3.87558 4.02413 4.16646 4.29965 4.32339 4.34797 4.39143 4.58438 4.62174 4.69844 4.77423 4.83868 4.98535 5.02612 5.05438 5.11833 5.17815 5.24964 5.27414 5.38396 5.43649 5.48256 5.55807 5.63240 5.70384 5.84440 6.22845 6.47705 7.08539 7.15051 7.76241 8.43794 9.26266 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.026056 B = 0.003337 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.357881 B = 8388.903015 C = 8605.246748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.127 4.127 3 C 0.161 3.839 4 H 0.058 0.942 5 C 0.155 3.845 6 H 0.074 0.926 7 N -0.691 5.691 8 C 0.553 3.447 9 O -0.577 6.577 10 C -0.193 4.193 11 C -0.056 4.056 12 C -0.128 4.128 13 C -0.053 4.053 14 C -0.165 4.165 15 C 0.119 3.881 16 F -0.143 7.143 17 C -0.142 4.142 18 C 0.183 3.817 19 N -0.612 5.612 20 C -0.232 4.232 21 H 0.085 0.915 22 C -0.063 4.063 23 N -0.950 5.950 24 Si 0.976 3.024 25 H -0.289 1.289 26 H -0.297 1.297 27 H -0.264 1.264 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.032 0.968 32 H 0.053 0.947 33 H 0.413 0.587 34 H 0.157 0.843 35 H 0.174 0.826 36 H 0.177 0.823 37 H 0.159 0.841 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.043 0.957 41 H -0.008 1.008 42 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.232 11.099 1.389 25.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.167 4.167 3 C 0.054 3.946 4 H 0.075 0.925 5 C 0.049 3.951 6 H 0.092 0.908 7 N -0.343 5.343 8 C 0.341 3.659 9 O -0.458 6.458 10 C -0.197 4.197 11 C -0.074 4.074 12 C -0.146 4.146 13 C -0.070 4.070 14 C -0.184 4.184 15 C 0.099 3.901 16 F -0.122 7.122 17 C -0.182 4.182 18 C 0.057 3.943 19 N -0.337 5.337 20 C -0.361 4.361 21 H 0.103 0.897 22 C -0.257 4.257 23 N -0.598 5.598 24 Si 0.804 3.196 25 H -0.216 1.216 26 H -0.224 1.224 27 H -0.188 1.188 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.252 0.748 34 H 0.174 0.826 35 H 0.191 0.809 36 H 0.194 0.806 37 H 0.176 0.824 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.010 0.990 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -22.784 10.707 0.652 25.183 hybrid contribution 1.448 -0.813 0.125 1.665 sum -21.336 9.895 0.777 23.531 Atomic orbital electron populations 1.21650 0.93887 1.02004 1.01605 1.21921 0.96448 0.97746 1.00600 1.21242 0.84709 0.94535 0.94132 0.92484 1.21714 0.83803 0.91997 0.97569 0.90764 1.45644 1.25994 1.51125 1.11551 1.18534 0.83127 0.80264 0.83929 1.90814 1.73364 1.54189 1.27440 1.20049 0.97913 1.05756 0.95964 1.21572 0.97307 0.94078 0.94492 1.21655 0.93825 0.97842 1.01273 1.21736 0.99440 0.95644 0.90221 1.21480 0.95980 0.99321 1.01622 1.18293 0.95901 0.96415 0.79490 1.91528 1.92590 1.85843 1.42233 1.23287 0.95639 0.98937 1.00318 1.21114 0.93610 0.92412 0.87131 1.44680 1.00638 1.69251 1.19118 1.19324 0.90471 1.35163 0.91156 0.89717 1.25737 0.98363 1.01971 0.99598 1.70146 1.09036 1.54573 1.26094 0.85116 0.77530 0.77721 0.79189 1.21639 1.22418 1.18849 0.91084 0.93816 0.92235 0.94874 0.92860 0.74786 0.82582 0.80901 0.80584 0.82384 0.90488 0.91920 0.93864 0.99016 0.94413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 9.65 71.98 0.69 -3.02 16 2 C -0.13 -4.71 5.43 30.60 0.17 -4.55 16 3 C 0.16 6.23 2.91 45.34 0.13 6.37 16 4 H 0.06 2.00 7.71 -2.39 -0.02 1.98 16 5 C 0.15 5.67 2.10 46.26 0.10 5.77 16 6 H 0.07 3.10 7.18 -2.38 -0.02 3.08 16 7 N -0.69 -19.59 4.92 -439.52 -2.16 -21.75 16 8 C 0.55 17.50 7.77 86.74 0.67 18.18 16 9 O -0.58 -23.97 14.99 -3.96 -0.06 -24.03 16 10 C -0.19 -4.60 5.88 -20.05 -0.12 -4.72 16 11 C -0.06 -0.80 9.54 22.52 0.21 -0.59 16 12 C -0.13 -1.09 10.03 22.23 0.22 -0.87 16 13 C -0.05 -0.44 10.03 22.31 0.22 -0.21 16 14 C -0.17 -2.45 10.01 22.28 0.22 -2.22 16 15 C 0.12 2.91 7.29 22.67 0.17 3.07 16 16 F -0.14 -4.58 15.55 44.97 0.70 -3.88 16 17 C -0.14 -5.73 6.78 32.07 0.22 -5.51 16 18 C 0.18 9.28 5.41 86.86 0.47 9.75 16 19 N -0.61 -30.56 3.13 -668.27 -2.09 -32.65 16 20 C -0.23 -12.55 9.71 84.03 0.82 -11.73 16 21 H 0.09 4.32 7.83 -2.91 -0.02 4.30 16 22 C -0.06 -3.55 5.47 84.86 0.46 -3.09 16 23 N -0.95 -57.26 10.57 21.65 0.23 -57.03 16 24 Si 0.98 45.11 29.55 68.60 2.03 47.14 16 25 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 26 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 27 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.04 1.26 7.48 -2.39 -0.02 1.25 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.03 1.36 8.02 -2.39 -0.02 1.34 16 32 H 0.05 2.09 7.84 -2.39 -0.02 2.07 16 33 H 0.41 8.71 6.40 -92.71 -0.59 8.12 16 34 H 0.16 1.52 6.41 -2.91 -0.02 1.50 16 35 H 0.17 0.26 8.06 -2.91 -0.02 0.24 16 36 H 0.18 0.11 8.06 -2.91 -0.02 0.08 16 37 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 39 H 0.06 2.52 8.14 -2.39 -0.02 2.51 16 40 H 0.04 2.43 6.93 -2.39 -0.02 2.41 16 41 H -0.01 -0.47 8.06 -2.38 -0.02 -0.49 16 42 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -76.06 346.95 3.75 -72.31 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.44 Total: 13.25 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 4.66 Total: 6.63 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -4.02 Total: -111.42 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.06 Total: -24.03 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.70 Total: -3.88 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -76.06 3.75 -72.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087487546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.586 kcal (2) G-P(sol) polarization free energy of solvation -76.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds