Wall clock time and date at job start Tue Mar 31 2020 08:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33223 * 126.02217 * 2 1 4 4 C 1.31532 * 109.76131 * 180.17423 * 3 2 1 5 5 O 1.35209 * 125.49301 * 179.82408 * 4 3 2 6 6 N 1.34946 * 109.01636 * 359.56252 * 4 3 2 7 7 H 0.96999 * 126.54501 * 180.24003 * 6 4 3 8 8 C 1.36726 * 126.01731 * 179.69334 * 2 1 3 9 9 C 1.46379 * 126.82166 * 0.02562 * 8 2 1 10 10 O 1.21735 * 120.00603 * 359.96370 * 9 8 2 11 11 N 1.34777 * 119.99557 * 179.97438 * 9 8 2 12 12 C 1.46506 * 119.99997 * 179.97438 * 11 9 8 13 13 H 1.09007 * 110.55750 * 32.09334 * 12 11 9 14 14 C 1.54841 * 110.62655 * 269.01971 * 12 11 9 15 15 C 1.55838 * 103.44872 * 241.51045 * 14 12 11 16 16 H 1.09002 * 115.56479 * 158.80934 * 15 14 12 17 17 C 1.55848 * 105.06307 * 288.17399 * 15 14 12 18 18 C 1.54851 * 103.44265 * 71.82265 * 17 15 14 19 19 C 1.55837 * 103.44815 * 0.02562 * 18 17 15 20 20 H 1.09009 * 116.12909 * 159.14977 * 19 18 17 21 21 N 1.50233 * 101.05104 * 32.93438 * 15 14 12 22 22 C 1.36940 * 130.83986 * 126.05324 * 21 15 14 23 23 H 1.08000 * 120.00156 * 185.32374 * 22 21 15 24 24 C 1.38813 * 120.00013 * 5.32154 * 22 21 15 25 25 N 1.31620 * 119.99624 * 9.26493 * 24 22 21 26 26 Si 1.86802 * 120.00314 * 189.26566 * 24 22 21 27 27 H 1.48494 * 109.47044 * 94.06526 * 26 24 22 28 28 H 1.48493 * 109.47145 * 214.06563 * 26 24 22 29 29 H 1.48498 * 109.46756 * 334.06492 * 26 24 22 30 30 H 1.09009 * 109.46929 * 270.30498 * 1 2 3 31 31 H 1.08996 * 109.46956 * 30.29927 * 1 2 3 32 32 H 1.08999 * 109.47275 * 150.30513 * 1 2 3 33 33 H 0.96704 * 114.00384 * 269.70142 * 5 4 3 34 34 H 0.97000 * 120.00355 * 359.97438 * 11 9 8 35 35 H 1.09005 * 110.62775 * 359.97438 * 14 12 11 36 36 H 1.09000 * 110.63088 * 123.01832 * 14 12 11 37 37 H 1.09000 * 110.62769 * 190.31253 * 17 15 14 38 38 H 1.09002 * 110.62618 * 313.17522 * 17 15 14 39 39 H 1.09007 * 110.62782 * 241.50869 * 18 17 15 40 40 H 1.09006 * 110.62665 * 118.49006 * 18 17 15 41 41 H 0.97001 * 119.99705 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2905 1.0775 0.0000 4 6 3.5532 0.7092 -0.0038 5 8 4.6150 1.5462 -0.0083 6 7 3.6181 -0.6387 0.0034 7 1 4.4242 -1.1781 0.0060 8 6 2.3110 -1.1059 0.0059 9 6 1.8791 -2.5045 0.0129 10 8 0.6922 -2.7751 0.0145 11 7 2.7955 -3.4927 0.0177 12 6 2.3634 -4.8925 0.0253 13 1 1.4241 -5.0060 -0.5161 14 6 2.2267 -5.4134 1.4770 15 6 3.2635 -6.5749 1.5444 16 1 3.5975 -6.8498 2.5450 17 6 2.6443 -7.7207 0.6886 18 6 2.7810 -7.1998 -0.7633 19 6 3.4647 -5.8106 -0.5870 20 1 3.9754 -5.4121 -1.4638 21 7 4.3283 -6.0648 0.6154 22 6 5.6727 -5.8869 0.8057 23 1 6.2703 -5.4224 0.0354 24 6 6.2673 -6.3035 1.9888 25 7 5.5844 -7.0294 2.8485 26 14 8.0366 -5.8340 2.3609 27 1 8.0584 -4.5941 3.1778 28 1 8.6930 -6.9336 3.1126 29 1 8.7650 -5.6009 1.0879 30 1 -0.3633 0.0055 1.0277 31 1 -0.3633 0.8873 -0.5185 32 1 -0.3634 -0.8927 -0.5091 33 1 4.9239 1.7851 -0.8930 34 1 3.7413 -3.2771 0.0162 35 1 2.4809 -4.6304 2.1915 36 1 1.2189 -5.7874 1.6576 37 1 3.2071 -8.6450 0.8195 38 1 1.5964 -7.8706 0.9483 39 1 1.8000 -7.0895 -1.2256 40 1 3.4116 -7.8657 -1.3524 41 1 5.9997 -7.3203 3.6754 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097273054.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:38 Heat of formation + Delta-G solvation = 27.942930 kcal Electronic energy + Delta-G solvation = -25741.825537 eV Core-core repulsion = 22045.377400 eV Total energy + Delta-G solvation = -3696.448138 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.34327 -39.77518 -38.39983 -37.50542 -34.26844 -33.13768 -32.56798 -30.82693 -29.21862 -29.00544 -28.12052 -26.68792 -24.32038 -23.13620 -21.90662 -20.64060 -20.05140 -19.85423 -19.39108 -18.68914 -17.78448 -17.09030 -16.39964 -16.06484 -15.48415 -14.93382 -14.86864 -14.33865 -14.09418 -13.68427 -13.57470 -13.31011 -12.96903 -12.66992 -12.45610 -12.16841 -12.07978 -11.93438 -11.35758 -11.23664 -11.04119 -10.98558 -10.61351 -10.44863 -10.42463 -10.18855 -10.17706 -10.04451 -9.87935 -9.42560 -9.23019 -8.99007 -8.76984 -8.38156 -7.04757 -5.87400 -3.24051 1.11943 2.26500 2.58021 3.27431 3.32119 3.35335 3.36225 3.42489 3.70715 4.30937 4.67759 4.90074 5.02455 5.12602 5.24367 5.46701 5.55135 5.59469 5.78505 5.79174 5.87862 5.96609 5.97249 6.00592 6.07375 6.18553 6.32783 6.38453 6.39825 6.51590 6.51862 6.65642 6.73972 6.86644 6.98897 7.23128 7.35753 7.37515 7.61607 7.68579 7.81623 8.03446 8.36565 8.94474 9.59212 10.41411 11.23457 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.013424 B = 0.004868 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.262510 B = 5749.979133 C = 7340.656562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.106 3.894 3 N -0.490 5.490 4 C 0.406 3.594 5 O -0.441 6.441 6 N -0.553 5.553 7 H 0.425 0.575 8 C -0.075 4.075 9 C 0.591 3.409 10 O -0.531 6.531 11 N -0.703 5.703 12 C 0.130 3.870 13 H 0.085 0.915 14 C -0.146 4.146 15 C 0.157 3.843 16 H 0.145 0.855 17 C -0.135 4.135 18 C -0.127 4.127 19 C 0.124 3.876 20 H 0.087 0.913 21 N -0.591 5.591 22 C -0.222 4.222 23 H 0.077 0.923 24 C -0.006 4.006 25 N -0.913 5.913 26 Si 0.912 3.088 27 H -0.290 1.290 28 H -0.290 1.290 29 H -0.282 1.282 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.405 0.595 34 H 0.396 0.604 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.120 9.595 -7.725 13.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.029 4.029 3 N -0.221 5.221 4 C 0.104 3.896 5 O -0.242 6.242 6 N -0.171 5.171 7 H 0.265 0.735 8 C -0.190 4.190 9 C 0.377 3.623 10 O -0.408 6.408 11 N -0.352 5.352 12 C 0.024 3.976 13 H 0.103 0.897 14 C -0.186 4.186 15 C 0.050 3.950 16 H 0.162 0.838 17 C -0.174 4.174 18 C -0.167 4.167 19 C 0.016 3.984 20 H 0.105 0.895 21 N -0.312 5.312 22 C -0.350 4.350 23 H 0.095 0.905 24 C -0.203 4.203 25 N -0.560 5.560 26 Si 0.742 3.258 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.263 0.737 34 H 0.230 0.770 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.895 10.177 -6.943 13.658 hybrid contribution 2.576 -0.611 -0.224 2.657 sum -3.319 9.566 -7.168 12.406 Atomic orbital electron populations 1.20319 0.85982 1.03761 1.03303 1.20915 0.96848 0.85880 0.99259 1.70246 0.98565 1.30453 1.22871 1.20139 0.87374 0.78728 1.03334 1.84851 1.43384 1.61660 1.34311 1.43762 1.09076 1.07922 1.56319 0.73518 1.21012 0.82822 0.95674 1.19476 1.16688 0.86180 0.82310 0.77165 1.90804 1.15826 1.82807 1.51401 1.45947 1.09112 1.06748 1.73357 1.22738 0.98252 0.78544 0.98081 0.89678 1.23483 0.99455 1.00575 0.95094 1.23567 0.84739 0.89122 0.97540 0.83757 1.23012 0.98631 1.00399 0.95381 1.22864 0.98701 0.97580 0.97599 1.23177 0.90418 0.93413 0.91436 0.89502 1.46555 1.03042 1.74123 1.07441 1.18966 0.81852 1.33114 1.01027 0.90493 1.24720 0.98132 0.99744 0.97709 1.69609 1.36072 1.39032 1.11290 0.86111 0.84004 0.77717 0.77950 1.21725 1.21655 1.20722 0.90560 0.91087 0.88849 0.73705 0.76982 0.92329 0.92378 0.92380 0.93302 0.92918 0.92390 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 9.87 36.00 0.36 -0.59 16 2 C 0.11 1.53 7.14 -82.54 -0.59 0.94 16 3 N -0.49 -7.09 11.22 -10.83 -0.12 -7.21 16 4 C 0.41 5.05 9.43 -89.60 -0.84 4.20 16 5 O -0.44 -4.22 13.62 -17.32 -0.24 -4.46 16 6 N -0.55 -6.61 6.12 -10.91 -0.07 -6.68 16 7 H 0.42 4.18 8.32 -40.82 -0.34 3.84 16 8 C -0.07 -1.08 7.08 -81.98 -0.58 -1.66 16 9 C 0.59 9.52 7.78 -12.98 -0.10 9.42 16 10 O -0.53 -9.65 14.44 5.16 0.07 -9.57 16 11 N -0.70 -11.19 5.07 -52.76 -0.27 -11.45 16 12 C 0.13 2.25 2.80 -65.41 -0.18 2.07 16 13 H 0.09 1.47 7.23 -51.93 -0.38 1.09 16 14 C -0.15 -2.80 6.23 -24.25 -0.15 -2.95 16 15 C 0.16 3.42 4.67 -62.81 -0.29 3.12 16 16 H 0.15 3.65 5.72 -51.93 -0.30 3.35 16 17 C -0.13 -2.58 6.44 -24.24 -0.16 -2.74 16 18 C -0.13 -2.21 6.44 -24.24 -0.16 -2.37 16 19 C 0.12 2.27 5.06 -62.79 -0.32 1.95 16 20 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 21 N -0.59 -13.28 2.98 -145.81 -0.43 -13.71 16 22 C -0.22 -5.54 10.56 -15.06 -0.16 -5.70 16 23 H 0.08 1.84 7.85 -52.49 -0.41 1.43 16 24 C -0.01 -0.16 5.47 -17.43 -0.10 -0.26 16 25 N -0.91 -24.95 10.64 55.49 0.59 -24.36 16 26 Si 0.91 20.69 29.56 -169.99 -5.03 15.66 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 30 H 0.08 0.91 8.14 -51.92 -0.42 0.48 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.21 6.46 -51.93 -0.34 0.88 16 33 H 0.41 1.58 9.06 45.56 0.41 1.99 16 34 H 0.40 5.97 7.90 -40.82 -0.32 5.65 16 35 H 0.06 1.22 7.98 -51.93 -0.41 0.80 16 36 H 0.06 1.04 7.82 -51.93 -0.41 0.64 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.83 7.82 -51.93 -0.41 0.42 16 39 H 0.05 0.80 7.82 -51.93 -0.41 0.39 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 336.94 15.07 5.08 5.08 Total: -1.00 -31.22 336.94 -8.23 -39.45 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -4.55 Total: 11.82 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -3.27 Total: 5.45 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: -0.30 Total: -63.42 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.16 Total: -14.03 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.22 -8.23 -39.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097273054.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.391 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds