Wall clock time and date at job start Tue Mar 31 2020 08:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33223 * 126.02217 * 2 1 4 4 C 1.31532 * 109.76131 * 180.17423 * 3 2 1 5 5 O 1.35209 * 125.49301 * 179.82408 * 4 3 2 6 6 N 1.34946 * 109.01636 * 359.56252 * 4 3 2 7 7 H 0.96999 * 126.54501 * 180.24003 * 6 4 3 8 8 C 1.36726 * 126.01731 * 179.69334 * 2 1 3 9 9 C 1.46379 * 126.82166 * 0.02562 * 8 2 1 10 10 O 1.21735 * 120.00603 * 359.96370 * 9 8 2 11 11 N 1.34777 * 119.99557 * 179.97438 * 9 8 2 12 12 C 1.46506 * 119.99997 * 179.97438 * 11 9 8 13 13 H 1.09007 * 110.55750 * 32.09334 * 12 11 9 14 14 C 1.54841 * 110.62655 * 269.01971 * 12 11 9 15 15 C 1.55838 * 103.44872 * 241.51045 * 14 12 11 16 16 H 1.09002 * 115.56479 * 158.80934 * 15 14 12 17 17 C 1.55848 * 105.06307 * 288.17399 * 15 14 12 18 18 C 1.54851 * 103.44265 * 71.82265 * 17 15 14 19 19 C 1.55837 * 103.44815 * 0.02562 * 18 17 15 20 20 H 1.09009 * 116.12909 * 159.14977 * 19 18 17 21 21 N 1.50233 * 101.05104 * 32.93438 * 15 14 12 22 22 C 1.36940 * 130.83986 * 126.05324 * 21 15 14 23 23 H 1.08000 * 120.00156 * 185.32374 * 22 21 15 24 24 C 1.38813 * 120.00013 * 5.32154 * 22 21 15 25 25 N 1.31620 * 119.99624 * 9.26493 * 24 22 21 26 26 Si 1.86802 * 120.00314 * 189.26566 * 24 22 21 27 27 H 1.48494 * 109.47044 * 94.06526 * 26 24 22 28 28 H 1.48493 * 109.47145 * 214.06563 * 26 24 22 29 29 H 1.48498 * 109.46756 * 334.06492 * 26 24 22 30 30 H 1.09009 * 109.46929 * 270.30498 * 1 2 3 31 31 H 1.08996 * 109.46956 * 30.29927 * 1 2 3 32 32 H 1.08999 * 109.47275 * 150.30513 * 1 2 3 33 33 H 0.96704 * 114.00384 * 269.70142 * 5 4 3 34 34 H 0.97000 * 120.00355 * 359.97438 * 11 9 8 35 35 H 1.09005 * 110.62775 * 359.97438 * 14 12 11 36 36 H 1.09000 * 110.63088 * 123.01832 * 14 12 11 37 37 H 1.09000 * 110.62769 * 190.31253 * 17 15 14 38 38 H 1.09002 * 110.62618 * 313.17522 * 17 15 14 39 39 H 1.09007 * 110.62782 * 241.50869 * 18 17 15 40 40 H 1.09006 * 110.62665 * 118.49006 * 18 17 15 41 41 H 0.97001 * 119.99705 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2905 1.0775 0.0000 4 6 3.5532 0.7092 -0.0038 5 8 4.6150 1.5462 -0.0083 6 7 3.6181 -0.6387 0.0034 7 1 4.4242 -1.1781 0.0060 8 6 2.3110 -1.1059 0.0059 9 6 1.8791 -2.5045 0.0129 10 8 0.6922 -2.7751 0.0145 11 7 2.7955 -3.4927 0.0177 12 6 2.3634 -4.8925 0.0253 13 1 1.4241 -5.0060 -0.5161 14 6 2.2267 -5.4134 1.4770 15 6 3.2635 -6.5749 1.5444 16 1 3.5975 -6.8498 2.5450 17 6 2.6443 -7.7207 0.6886 18 6 2.7810 -7.1998 -0.7633 19 6 3.4647 -5.8106 -0.5870 20 1 3.9754 -5.4121 -1.4638 21 7 4.3283 -6.0648 0.6154 22 6 5.6727 -5.8869 0.8057 23 1 6.2703 -5.4224 0.0354 24 6 6.2673 -6.3035 1.9888 25 7 5.5844 -7.0294 2.8485 26 14 8.0366 -5.8340 2.3609 27 1 8.0584 -4.5941 3.1778 28 1 8.6930 -6.9336 3.1126 29 1 8.7650 -5.6009 1.0879 30 1 -0.3633 0.0055 1.0277 31 1 -0.3633 0.8873 -0.5185 32 1 -0.3634 -0.8927 -0.5091 33 1 4.9239 1.7851 -0.8930 34 1 3.7413 -3.2771 0.0162 35 1 2.4809 -4.6304 2.1915 36 1 1.2189 -5.7874 1.6576 37 1 3.2071 -8.6450 0.8195 38 1 1.5964 -7.8706 0.9483 39 1 1.8000 -7.0895 -1.2256 40 1 3.4116 -7.8657 -1.3524 41 1 5.9997 -7.3203 3.6754 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097273054.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:37 Heat of formation + Delta-G solvation = 2.771290 kcal Electronic energy + Delta-G solvation = -25742.917061 eV Core-core repulsion = 22045.377400 eV Total energy + Delta-G solvation = -3697.539662 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.35931 -41.20780 -39.74101 -38.38083 -35.56630 -34.57296 -34.05083 -31.87942 -30.98806 -30.46737 -29.54862 -27.82949 -26.12352 -24.25672 -23.08476 -21.93315 -21.55182 -21.06685 -20.55819 -20.06215 -18.85298 -18.82415 -17.42942 -17.36262 -16.79012 -16.58404 -16.04121 -15.86896 -15.56830 -15.04201 -14.80943 -14.56226 -14.20823 -13.76334 -13.67190 -13.59697 -13.34317 -13.03918 -12.93619 -12.86451 -12.78748 -12.71716 -12.10349 -11.95113 -11.90498 -11.73183 -11.51873 -11.28560 -11.19332 -11.02567 -10.82614 -10.72033 -10.11125 -9.47122 -8.87517 -7.80398 -5.16642 0.06886 1.32964 1.47023 1.47774 1.55324 1.55863 2.12282 2.21952 2.48498 2.80266 3.34880 3.44165 3.68975 3.87303 3.99955 4.07121 4.09899 4.27264 4.45537 4.45864 4.49397 4.64170 4.68182 4.82763 4.84897 4.91039 4.95261 4.99516 5.08843 5.17466 5.19826 5.38368 5.45827 5.51472 5.56665 5.69868 5.76320 5.88751 6.22682 6.42821 6.63928 6.68893 7.02318 7.11067 7.70897 8.57788 9.29348 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.013424 B = 0.004868 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.262510 B = 5749.979133 C = 7340.656562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.101 3.899 3 N -0.516 5.516 4 C 0.422 3.578 5 O -0.442 6.442 6 N -0.543 5.543 7 H 0.434 0.566 8 C -0.094 4.094 9 C 0.595 3.405 10 O -0.554 6.554 11 N -0.701 5.701 12 C 0.143 3.857 13 H 0.097 0.903 14 C -0.135 4.135 15 C 0.142 3.858 16 H 0.106 0.894 17 C -0.129 4.129 18 C -0.120 4.120 19 C 0.127 3.873 20 H 0.104 0.896 21 N -0.610 5.610 22 C -0.216 4.216 23 H 0.087 0.913 24 C -0.065 4.065 25 N -0.945 5.945 26 Si 0.969 3.031 27 H -0.294 1.294 28 H -0.304 1.304 29 H -0.267 1.267 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.432 0.568 34 H 0.401 0.599 35 H 0.035 0.965 36 H 0.072 0.928 37 H 0.033 0.967 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.214 10.963 -9.579 15.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.034 4.034 3 N -0.248 5.248 4 C 0.120 3.880 5 O -0.247 6.247 6 N -0.163 5.163 7 H 0.276 0.724 8 C -0.209 4.209 9 C 0.382 3.618 10 O -0.433 6.433 11 N -0.349 5.349 12 C 0.036 3.964 13 H 0.115 0.885 14 C -0.176 4.176 15 C 0.036 3.964 16 H 0.123 0.877 17 C -0.168 4.168 18 C -0.159 4.159 19 C 0.020 3.980 20 H 0.122 0.878 21 N -0.331 5.331 22 C -0.345 4.345 23 H 0.105 0.895 24 C -0.258 4.258 25 N -0.594 5.594 26 Si 0.799 3.201 27 H -0.222 1.222 28 H -0.231 1.231 29 H -0.191 1.191 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.295 0.705 34 H 0.235 0.765 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.968 11.566 -8.859 15.744 hybrid contribution 2.613 -0.945 0.324 2.797 sum -3.355 10.621 -8.534 14.032 Atomic orbital electron populations 1.20336 0.85079 1.04152 1.03572 1.21261 0.97720 0.85949 0.98469 1.70266 0.99459 1.30677 1.24370 1.20237 0.87609 0.79039 1.01124 1.84818 1.42241 1.60866 1.36734 1.43650 1.08729 1.07935 1.55954 0.72386 1.20717 0.83886 0.94788 1.21492 1.16807 0.85766 0.82843 0.76370 1.90787 1.16697 1.83311 1.52471 1.45845 1.09390 1.06231 1.73456 1.22530 0.98334 0.79066 0.96443 0.88542 1.23343 0.99225 0.98972 0.96041 1.23410 0.85568 0.91134 0.96325 0.87691 1.22917 0.99309 0.98283 0.96308 1.22828 1.00330 0.96511 0.96250 1.23380 0.89880 0.94174 0.90580 0.87831 1.46737 1.02711 1.74294 1.09389 1.19347 0.83219 1.31177 1.00711 0.89480 1.25413 1.01334 1.00832 0.98238 1.69843 1.37158 1.40971 1.11456 0.85187 0.80561 0.76472 0.77858 1.22165 1.23132 1.19122 0.90293 0.89475 0.89596 0.70550 0.76475 0.94568 0.90986 0.94769 0.90996 0.89683 0.92503 0.94601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.74 9.87 71.24 0.70 -1.04 16 2 C 0.10 2.78 7.14 41.99 0.30 3.08 16 3 N -0.52 -14.01 11.22 -301.67 -3.38 -17.40 16 4 C 0.42 9.56 9.43 179.99 1.70 11.25 16 5 O -0.44 -7.19 13.62 -84.90 -1.16 -8.35 16 6 N -0.54 -11.97 6.12 -300.13 -1.84 -13.81 16 7 H 0.43 7.65 8.32 -92.71 -0.77 6.88 16 8 C -0.09 -2.57 7.08 39.80 0.28 -2.29 16 9 C 0.59 18.34 7.78 86.36 0.67 19.01 16 10 O -0.55 -19.40 14.44 -4.46 -0.06 -19.46 16 11 N -0.70 -21.13 5.07 -439.02 -2.23 -23.36 16 12 C 0.14 4.65 2.80 46.62 0.13 4.79 16 13 H 0.10 3.02 7.23 -2.38 -0.02 3.00 16 14 C -0.14 -5.12 6.23 32.20 0.20 -4.92 16 15 C 0.14 6.24 4.67 46.23 0.22 6.45 16 16 H 0.11 5.54 5.72 -2.39 -0.01 5.52 16 17 C -0.13 -4.81 6.44 32.21 0.21 -4.61 16 18 C -0.12 -3.84 6.44 32.21 0.21 -3.63 16 19 C 0.13 4.36 5.06 46.25 0.23 4.59 16 20 H 0.10 3.22 8.14 -2.38 -0.02 3.20 16 21 N -0.61 -27.04 2.98 -615.24 -1.83 -28.88 16 22 C -0.22 -10.67 10.56 84.03 0.89 -9.78 16 23 H 0.09 4.03 7.85 -2.91 -0.02 4.00 16 24 C -0.07 -3.41 5.47 84.86 0.46 -2.95 16 25 N -0.94 -53.41 10.64 21.65 0.23 -53.18 16 26 Si 0.97 42.96 29.56 68.60 2.03 44.99 16 27 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 28 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 29 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 30 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.09 2.16 6.46 -2.39 -0.02 2.14 16 33 H 0.43 1.95 9.06 -74.05 -0.67 1.28 16 34 H 0.40 11.40 7.90 -92.71 -0.73 10.66 16 35 H 0.04 1.50 7.98 -2.38 -0.02 1.48 16 36 H 0.07 2.49 7.82 -2.39 -0.02 2.47 16 37 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.07 2.32 7.82 -2.39 -0.02 2.30 16 39 H 0.08 2.22 7.82 -2.38 -0.02 2.20 16 40 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.24 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -67.56 336.94 -3.11 -70.67 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: -1.07 Total: 28.79 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: 6.20 Total: 19.97 kcal Atomic # 7 Polarization: -127.56 SS G_CDS: -9.05 Total: -136.61 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -1.22 Total: -27.81 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -67.56 -3.11 -70.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097273054.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.439 kcal (2) G-P(sol) polarization free energy of solvation -67.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds