Wall clock time and date at job start Tue Mar 31 2020 08:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29952 * 125.30149 * 2 1 4 4 O 1.41880 * 107.40989 * 180.24136 * 3 2 1 5 5 N 1.41872 * 106.38937 * 359.71271 * 4 3 2 6 6 C 1.29952 * 107.41664 * 0.02562 * 5 4 3 7 7 C 1.50695 * 125.30931 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47371 * 90.02097 * 7 6 5 9 9 O 1.21286 * 119.99949 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00350 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00058 * 180.02562 * 10 8 7 12 12 H 1.09002 * 110.56023 * 34.30133 * 11 10 8 13 13 C 1.54857 * 110.62664 * 271.40080 * 11 10 8 14 14 C 1.55845 * 103.44400 * 241.35076 * 13 11 10 15 15 H 1.09000 * 115.56212 * 159.56429 * 14 13 11 16 16 C 1.55838 * 105.06620 * 288.17687 * 14 13 11 17 17 C 1.54857 * 103.44669 * 71.82508 * 16 14 13 18 18 C 1.55838 * 110.76084 * 157.29611 * 11 10 8 19 19 H 1.09004 * 115.56454 * 318.98977 * 18 11 10 20 20 N 1.50240 * 101.05175 * 32.93927 * 14 13 11 21 21 C 1.36935 * 130.83889 * 126.04557 * 20 14 13 22 22 H 1.08004 * 119.99844 * 180.02562 * 21 20 14 23 23 C 1.38810 * 120.00236 * 0.03318 * 21 20 14 24 24 N 1.31618 * 119.99865 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00380 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46842 * 59.99396 * 25 23 21 27 27 H 1.48489 * 109.47229 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47055 * 300.00048 * 25 23 21 29 29 H 1.08999 * 109.47388 * 270.23700 * 1 2 3 30 30 H 1.08998 * 109.46864 * 30.23616 * 1 2 3 31 31 H 1.09004 * 109.46741 * 150.23265 * 1 2 3 32 32 H 1.09001 * 109.46602 * 330.02651 * 7 6 5 33 33 H 1.08993 * 109.47351 * 210.02621 * 7 6 5 34 34 H 0.97000 * 119.99908 * 0.02562 * 10 8 7 35 35 H 1.08994 * 110.62421 * 359.83866 * 13 11 10 36 36 H 1.08995 * 110.62373 * 122.70480 * 13 11 10 37 37 H 1.09004 * 110.63095 * 190.31229 * 16 14 13 38 38 H 1.09003 * 110.62882 * 313.33929 * 16 14 13 39 39 H 1.08997 * 110.62765 * 118.49314 * 17 16 14 40 40 H 1.08999 * 110.62588 * 241.50981 * 17 16 14 41 41 H 0.97001 * 119.99902 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0606 0.0000 4 8 3.6081 0.6247 -0.0057 5 7 3.5710 -0.7935 -0.0022 6 6 2.3213 -1.1499 0.0043 7 6 1.8209 -2.5713 0.0105 8 6 1.6598 -3.0411 1.4332 9 8 1.9248 -2.2948 2.3519 10 7 1.2213 -4.2904 1.6850 11 6 1.0642 -4.7468 3.0682 12 1 0.7451 -3.9246 3.7087 13 6 2.3838 -5.3657 3.5916 14 6 1.9896 -6.8380 3.9165 15 1 2.8169 -7.5457 3.9691 16 6 1.1005 -6.7470 5.1932 17 6 -0.2190 -6.1281 4.6698 18 6 0.0526 -5.9295 3.1481 19 1 -0.8337 -5.8336 2.5208 20 7 0.9523 -7.0980 2.8613 21 6 0.8563 -8.0937 1.9261 22 1 0.0218 -8.1123 1.2408 23 6 1.8315 -9.0793 1.8590 24 7 2.8487 -9.0565 2.6939 25 14 1.7002 -10.4380 0.5838 26 1 1.6984 -9.8418 -0.7763 27 1 2.8582 -11.3575 0.7192 28 1 0.4397 -11.1943 0.7943 29 1 -0.3634 0.0043 1.0276 30 1 -0.3633 0.8879 -0.5175 31 1 -0.3633 -0.8921 -0.5102 32 1 2.5377 -3.2110 -0.5044 33 1 0.8588 -2.6200 -0.4994 34 1 1.0097 -4.8873 0.9503 35 1 3.1541 -5.3355 2.8211 36 1 2.7204 -4.8485 4.4901 37 1 0.9213 -7.7390 5.6080 38 1 1.5614 -6.0964 5.9365 39 1 -1.0525 -6.8132 4.8250 40 1 -0.4125 -5.1707 5.1535 41 1 3.5303 -9.7450 2.6468 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098131625.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:14 Heat of formation + Delta-G solvation = 97.416891 kcal Electronic energy + Delta-G solvation = -25454.193987 eV Core-core repulsion = 21760.758466 eV Total energy + Delta-G solvation = -3693.435521 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.64860 -39.90013 -38.51698 -34.70740 -33.95789 -33.51823 -32.60374 -30.04566 -29.18775 -28.97293 -28.72242 -27.47264 -24.29325 -23.00545 -21.74529 -20.84138 -20.03572 -19.78862 -18.73374 -17.22004 -17.10213 -17.07822 -15.95648 -15.84934 -15.32476 -14.90181 -14.50747 -14.29379 -14.00885 -13.96753 -13.66799 -13.50169 -13.23715 -12.92250 -12.51474 -12.12397 -11.89553 -11.87718 -11.78598 -11.32894 -11.19865 -11.02489 -11.00787 -10.94741 -10.77214 -10.59841 -10.43290 -10.18227 -10.02367 -9.87911 -9.33725 -9.24168 -9.03936 -8.62170 -7.03261 -5.81527 -3.21360 0.42248 1.78943 2.51696 2.68139 2.95916 3.30918 3.35812 3.38227 3.42693 3.72112 4.33818 4.35913 4.59427 4.81562 4.92975 5.02490 5.03692 5.07264 5.22805 5.28508 5.41448 5.55352 5.59757 5.61301 5.80039 5.97561 6.01071 6.06952 6.21694 6.34102 6.41317 6.51839 6.65713 6.76051 6.80162 6.87253 6.99781 7.24491 7.38966 7.71934 7.77390 8.08271 8.37312 8.99492 9.63137 10.43644 11.27414 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.018116 B = 0.003705 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.227858 B = 7554.645704 C = 8216.258886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.088 3.912 3 N -0.283 5.283 4 O 0.024 5.976 5 N -0.261 5.261 6 C 0.100 3.900 7 C -0.084 4.084 8 C 0.515 3.485 9 O -0.544 6.544 10 N -0.698 5.698 11 C 0.128 3.872 12 H 0.080 0.920 13 C -0.144 4.144 14 C 0.156 3.844 15 H 0.152 0.848 16 C -0.140 4.140 17 C -0.128 4.128 18 C 0.127 3.873 19 H 0.089 0.911 20 N -0.590 5.590 21 C -0.219 4.219 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.918 5.918 25 Si 0.915 3.085 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.286 1.286 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.405 0.595 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.271 11.661 -4.539 14.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 N -0.028 5.028 4 O -0.117 6.117 5 N -0.003 5.003 6 C -0.084 4.084 7 C -0.125 4.125 8 C 0.299 3.701 9 O -0.422 6.422 10 N -0.348 5.348 11 C 0.022 3.978 12 H 0.098 0.902 13 C -0.184 4.184 14 C 0.049 3.951 15 H 0.168 0.832 16 C -0.179 4.179 17 C -0.168 4.168 18 C 0.018 3.982 19 H 0.107 0.893 20 N -0.311 5.311 21 C -0.347 4.347 22 H 0.096 0.904 23 C -0.204 4.204 24 N -0.565 5.565 25 Si 0.746 3.254 26 H -0.213 1.213 27 H -0.216 1.216 28 H -0.213 1.213 29 H 0.117 0.883 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.240 0.760 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.764 12.724 -4.042 14.542 hybrid contribution -0.648 -1.433 -0.935 1.830 sum -6.413 11.292 -4.977 13.907 Atomic orbital electron populations 1.20586 0.84291 1.05007 1.05174 1.24499 1.00268 0.88881 0.95809 1.79875 0.89169 1.19654 1.14133 1.93379 1.20130 1.13532 1.84632 1.79947 1.17429 0.91126 1.11845 1.23794 0.89953 0.97806 0.96803 1.20400 1.04980 0.89039 0.98098 1.19927 0.77943 0.82670 0.89582 1.90737 1.50316 1.54976 1.46144 1.45945 1.65624 1.12869 1.10338 1.22699 0.98141 0.96259 0.80667 0.90223 1.23463 0.96040 0.99241 0.99652 1.23695 0.93685 0.92684 0.84990 0.83164 1.23077 0.96549 0.99270 0.99035 1.22891 0.98278 0.99072 0.96603 1.23132 0.92673 0.87685 0.94695 0.89316 1.46509 1.22672 1.25406 1.36476 1.18937 1.06430 1.01196 1.08136 0.90404 1.24710 0.97147 0.99050 0.99469 1.69477 1.12951 1.35491 1.38611 0.86153 0.76989 0.81604 0.80691 1.21252 1.21604 1.21260 0.88283 0.89186 0.88829 0.85683 0.85552 0.75980 0.92207 0.92791 0.92579 0.93308 0.92370 0.92999 0.93415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 10.23 36.01 0.37 -0.24 16 2 C 0.09 1.00 7.19 -82.38 -0.59 0.41 16 3 N -0.28 -3.93 12.98 33.74 0.44 -3.49 16 4 O 0.02 0.39 13.71 12.02 0.16 0.55 16 5 N -0.26 -4.03 12.98 33.74 0.44 -3.59 16 6 C 0.10 1.26 5.68 -82.38 -0.47 0.79 16 7 C -0.08 -0.84 6.05 -29.04 -0.18 -1.02 16 8 C 0.52 7.32 7.82 -10.99 -0.09 7.24 16 9 O -0.54 -9.90 15.72 5.55 0.09 -9.81 16 10 N -0.70 -10.21 5.09 -51.40 -0.26 -10.47 16 11 C 0.13 2.18 2.76 -65.44 -0.18 2.00 16 12 H 0.08 1.36 7.29 -51.93 -0.38 0.98 16 13 C -0.14 -2.80 6.22 -24.23 -0.15 -2.95 16 14 C 0.16 3.40 4.69 -62.80 -0.29 3.10 16 15 H 0.15 3.81 5.57 -51.93 -0.29 3.52 16 16 C -0.14 -2.65 6.44 -24.24 -0.16 -2.80 16 17 C -0.13 -2.18 6.44 -24.23 -0.16 -2.33 16 18 C 0.13 2.25 5.06 -62.80 -0.32 1.93 16 19 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 20 N -0.59 -13.09 2.99 -145.82 -0.44 -13.53 16 21 C -0.22 -5.40 10.59 -15.06 -0.16 -5.56 16 22 H 0.08 1.82 7.83 -52.48 -0.41 1.41 16 23 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 24 N -0.92 -24.89 10.48 55.49 0.58 -24.30 16 25 Si 0.92 20.51 29.55 -169.99 -5.02 15.49 16 26 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.37 7.13 -51.93 -0.37 0.00 16 32 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.13 0.70 7.13 -51.93 -0.37 0.33 16 34 H 0.41 5.46 8.64 -40.82 -0.35 5.11 16 35 H 0.06 1.27 7.98 -51.93 -0.41 0.86 16 36 H 0.05 1.01 7.82 -51.93 -0.41 0.60 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.05 0.83 7.82 -51.93 -0.41 0.43 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.77 7.82 -51.93 -0.41 0.36 16 41 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 341.68 15.07 5.15 5.15 Total: -1.00 -31.75 341.68 -6.80 -38.55 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.48 Total: 5.19 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -2.46 Total: 0.27 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.76 Total: -55.38 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.25 Total: -9.26 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.75 -6.80 -38.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098131625.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.968 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds