Wall clock time and date at job start Tue Mar 31 2020 08:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29952 * 125.30149 * 2 1 4 4 O 1.41880 * 107.40989 * 180.24136 * 3 2 1 5 5 N 1.41872 * 106.38937 * 359.71271 * 4 3 2 6 6 C 1.29952 * 107.41664 * 0.02562 * 5 4 3 7 7 C 1.50695 * 125.30931 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47371 * 90.02097 * 7 6 5 9 9 O 1.21286 * 119.99949 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00350 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00058 * 180.02562 * 10 8 7 12 12 H 1.09002 * 110.56023 * 34.30133 * 11 10 8 13 13 C 1.54857 * 110.62664 * 271.40080 * 11 10 8 14 14 C 1.55845 * 103.44400 * 241.35076 * 13 11 10 15 15 H 1.09000 * 115.56212 * 159.56429 * 14 13 11 16 16 C 1.55838 * 105.06620 * 288.17687 * 14 13 11 17 17 C 1.54857 * 103.44669 * 71.82508 * 16 14 13 18 18 C 1.55838 * 110.76084 * 157.29611 * 11 10 8 19 19 H 1.09004 * 115.56454 * 318.98977 * 18 11 10 20 20 N 1.50240 * 101.05175 * 32.93927 * 14 13 11 21 21 C 1.36935 * 130.83889 * 126.04557 * 20 14 13 22 22 H 1.08004 * 119.99844 * 180.02562 * 21 20 14 23 23 C 1.38810 * 120.00236 * 0.03318 * 21 20 14 24 24 N 1.31618 * 119.99865 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00380 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46842 * 59.99396 * 25 23 21 27 27 H 1.48489 * 109.47229 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47055 * 300.00048 * 25 23 21 29 29 H 1.08999 * 109.47388 * 270.23700 * 1 2 3 30 30 H 1.08998 * 109.46864 * 30.23616 * 1 2 3 31 31 H 1.09004 * 109.46741 * 150.23265 * 1 2 3 32 32 H 1.09001 * 109.46602 * 330.02651 * 7 6 5 33 33 H 1.08993 * 109.47351 * 210.02621 * 7 6 5 34 34 H 0.97000 * 119.99908 * 0.02562 * 10 8 7 35 35 H 1.08994 * 110.62421 * 359.83866 * 13 11 10 36 36 H 1.08995 * 110.62373 * 122.70480 * 13 11 10 37 37 H 1.09004 * 110.63095 * 190.31229 * 16 14 13 38 38 H 1.09003 * 110.62882 * 313.33929 * 16 14 13 39 39 H 1.08997 * 110.62765 * 118.49314 * 17 16 14 40 40 H 1.08999 * 110.62588 * 241.50981 * 17 16 14 41 41 H 0.97001 * 119.99902 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0606 0.0000 4 8 3.6081 0.6247 -0.0057 5 7 3.5710 -0.7935 -0.0022 6 6 2.3213 -1.1499 0.0043 7 6 1.8209 -2.5713 0.0105 8 6 1.6598 -3.0411 1.4332 9 8 1.9248 -2.2948 2.3519 10 7 1.2213 -4.2904 1.6850 11 6 1.0642 -4.7468 3.0682 12 1 0.7451 -3.9246 3.7087 13 6 2.3838 -5.3657 3.5916 14 6 1.9896 -6.8380 3.9165 15 1 2.8169 -7.5457 3.9691 16 6 1.1005 -6.7470 5.1932 17 6 -0.2190 -6.1281 4.6698 18 6 0.0526 -5.9295 3.1481 19 1 -0.8337 -5.8336 2.5208 20 7 0.9523 -7.0980 2.8613 21 6 0.8563 -8.0937 1.9261 22 1 0.0218 -8.1123 1.2408 23 6 1.8315 -9.0793 1.8590 24 7 2.8487 -9.0565 2.6939 25 14 1.7002 -10.4380 0.5838 26 1 1.6984 -9.8418 -0.7763 27 1 2.8582 -11.3575 0.7192 28 1 0.4397 -11.1943 0.7943 29 1 -0.3634 0.0043 1.0276 30 1 -0.3633 0.8879 -0.5175 31 1 -0.3633 -0.8921 -0.5102 32 1 2.5377 -3.2110 -0.5044 33 1 0.8588 -2.6200 -0.4994 34 1 1.0097 -4.8873 0.9503 35 1 3.1541 -5.3355 2.8211 36 1 2.7204 -4.8485 4.4901 37 1 0.9213 -7.7390 5.6080 38 1 1.5614 -6.0964 5.9365 39 1 -1.0525 -6.8132 4.8250 40 1 -0.4125 -5.1707 5.1535 41 1 3.5303 -9.7450 2.6468 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098131625.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:13 Heat of formation + Delta-G solvation = 75.320034 kcal Electronic energy + Delta-G solvation = -25455.152178 eV Core-core repulsion = 21760.758466 eV Total energy + Delta-G solvation = -3694.393712 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.61825 -41.24770 -39.87346 -35.65887 -35.29570 -34.48800 -34.34896 -31.16267 -30.93602 -30.20202 -29.64268 -28.82017 -26.07562 -24.08168 -22.90117 -21.92958 -21.50702 -21.08388 -20.23438 -18.81292 -18.31061 -18.05386 -17.18323 -16.91642 -16.69992 -16.37751 -15.79914 -15.50326 -15.29658 -15.18762 -14.76287 -14.43475 -14.24594 -13.90133 -13.70040 -13.60745 -13.18656 -12.87350 -12.86603 -12.79859 -12.75510 -12.65570 -12.57495 -12.11862 -12.06705 -11.95777 -11.85423 -11.68029 -11.66770 -11.23153 -10.93376 -10.88915 -10.66904 -9.95060 -8.83648 -7.71449 -5.11243 -0.55924 0.88641 1.49287 1.53621 1.55039 1.58808 1.60982 2.02896 2.34023 2.54746 2.82383 3.42407 3.48890 3.49809 3.83404 3.89558 4.05712 4.12795 4.17104 4.31476 4.42059 4.47398 4.48978 4.52537 4.65632 4.66627 4.73756 4.75169 4.87556 4.93475 5.12838 5.13991 5.20261 5.21240 5.42513 5.55991 5.62638 5.72839 5.83092 5.93654 6.29036 6.62276 7.09282 7.25335 7.77819 8.63070 9.36034 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.018116 B = 0.003705 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.227858 B = 7554.645704 C = 8216.258886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.102 3.898 3 N -0.307 5.307 4 O -0.018 6.018 5 N -0.298 5.298 6 C 0.106 3.894 7 C -0.076 4.076 8 C 0.518 3.482 9 O -0.586 6.586 10 N -0.694 5.694 11 C 0.142 3.858 12 H 0.088 0.912 13 C -0.136 4.136 14 C 0.140 3.860 15 H 0.110 0.890 16 C -0.135 4.135 17 C -0.121 4.121 18 C 0.132 3.868 19 H 0.115 0.885 20 N -0.609 5.609 21 C -0.211 4.211 22 H 0.092 0.908 23 C -0.068 4.068 24 N -0.950 5.950 25 Si 0.972 3.028 26 H -0.275 1.275 27 H -0.307 1.307 28 H -0.283 1.283 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.130 0.870 32 H 0.138 0.862 33 H 0.184 0.816 34 H 0.414 0.586 35 H 0.032 0.968 36 H 0.058 0.942 37 H 0.035 0.965 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.573 12.413 -5.760 17.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.081 4.081 3 N -0.057 5.057 4 O -0.151 6.151 5 N -0.043 5.043 6 C -0.078 4.078 7 C -0.117 4.117 8 C 0.304 3.696 9 O -0.466 6.466 10 N -0.344 5.344 11 C 0.035 3.965 12 H 0.106 0.894 13 C -0.176 4.176 14 C 0.034 3.966 15 H 0.127 0.873 16 C -0.174 4.174 17 C -0.161 4.161 18 C 0.025 3.975 19 H 0.133 0.867 20 N -0.330 5.330 21 C -0.340 4.340 22 H 0.110 0.890 23 C -0.261 4.261 24 N -0.600 5.600 25 Si 0.802 3.198 26 H -0.201 1.201 27 H -0.234 1.234 28 H -0.209 1.209 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.148 0.852 32 H 0.156 0.844 33 H 0.201 0.799 34 H 0.250 0.750 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.066 13.519 -5.287 17.114 hybrid contribution 0.306 -1.665 -0.501 1.765 sum -8.760 11.855 -5.788 15.836 Atomic orbital electron populations 1.20935 0.80465 1.07671 1.06149 1.25291 1.02253 0.87630 0.92971 1.79857 0.88552 1.20882 1.16374 1.93348 1.21883 1.13892 1.86006 1.79896 1.19471 0.91191 1.13734 1.24346 0.89403 0.99326 0.94732 1.20588 1.08231 0.87250 0.95589 1.20484 0.76411 0.81854 0.90835 1.90735 1.51910 1.56012 1.47970 1.45834 1.65675 1.13280 1.09594 1.22422 0.95950 0.95969 0.82169 0.89394 1.23323 0.96913 0.98201 0.99191 1.23495 0.93403 0.92995 0.86745 0.87269 1.22979 0.97467 0.98928 0.98060 1.22860 0.96795 1.00398 0.96017 1.23360 0.92830 0.85768 0.95505 0.86735 1.46696 1.23867 1.26270 1.36181 1.19358 1.05826 1.00932 1.07849 0.88987 1.25423 0.97577 1.01523 1.01546 1.69754 1.13811 1.35903 1.40570 0.85236 0.76083 0.79165 0.79316 1.20068 1.23447 1.20906 0.87740 0.87622 0.85178 0.84385 0.79876 0.75006 0.94881 0.92342 0.94561 0.91589 0.92096 0.90008 0.94768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.84 10.23 71.24 0.73 -0.11 16 2 C 0.10 2.07 7.19 43.49 0.31 2.38 16 3 N -0.31 -8.39 12.98 -47.16 -0.61 -9.01 16 4 O -0.02 -0.59 13.71 70.17 0.96 0.37 16 5 N -0.30 -9.20 12.98 -47.16 -0.61 -9.81 16 6 C 0.11 2.45 5.68 43.49 0.25 2.70 16 7 C -0.08 -1.23 6.05 29.10 0.18 -1.06 16 8 C 0.52 13.17 7.82 87.66 0.69 13.86 16 9 O -0.59 -20.18 15.72 -3.05 -0.05 -20.23 16 10 N -0.69 -18.08 5.09 -434.91 -2.21 -20.29 16 11 C 0.14 4.43 2.76 46.61 0.13 4.55 16 12 H 0.09 2.69 7.29 -2.39 -0.02 2.67 16 13 C -0.14 -5.24 6.22 32.21 0.20 -5.04 16 14 C 0.14 6.15 4.69 46.23 0.22 6.37 16 15 H 0.11 5.80 5.57 -2.39 -0.01 5.79 16 16 C -0.13 -4.98 6.44 32.21 0.21 -4.78 16 17 C -0.12 -3.72 6.44 32.21 0.21 -3.51 16 18 C 0.13 4.25 5.06 46.22 0.23 4.49 16 19 H 0.11 3.13 8.14 -2.38 -0.02 3.11 16 20 N -0.61 -26.26 2.99 -615.25 -1.84 -28.10 16 21 C -0.21 -10.13 10.59 84.03 0.89 -9.24 16 22 H 0.09 4.06 7.83 -2.91 -0.02 4.04 16 23 C -0.07 -3.53 5.50 84.86 0.47 -3.06 16 24 N -0.95 -53.31 10.48 21.65 0.23 -53.08 16 25 Si 0.97 42.27 29.55 68.60 2.03 44.29 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 27 H -0.31 -14.09 7.11 99.48 0.71 -13.38 16 28 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 29 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.13 0.21 7.13 -2.38 -0.02 0.19 16 32 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.18 0.84 7.13 -2.39 -0.02 0.82 16 34 H 0.41 9.58 8.64 -92.71 -0.80 8.78 16 35 H 0.03 1.42 7.98 -2.39 -0.02 1.40 16 36 H 0.06 2.15 7.82 -2.39 -0.02 2.14 16 37 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.07 2.17 7.82 -2.39 -0.02 2.15 16 39 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 40 H 0.08 2.07 7.82 -2.39 -0.02 2.05 16 41 H 0.24 13.61 8.31 -92.71 -0.77 12.84 16 Total: -1.00 -73.59 341.68 2.86 -70.73 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.27 Total: 17.56 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 4.70 Total: 7.56 kcal Atomic # 7 Polarization: -115.24 SS G_CDS: -5.05 Total: -120.29 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: 0.91 Total: -19.86 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -73.59 2.86 -70.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098131625.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.045 kcal (2) G-P(sol) polarization free energy of solvation -73.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds