Wall clock time and date at job start Tue Mar 31 2020 08:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30648 * 128.63757 * 2 1 4 4 O 1.20834 * 109.61566 * 180.02562 * 3 2 1 5 5 N 1.20909 * 115.91053 * 359.73087 * 4 3 2 6 6 C 1.31599 * 109.17413 * 0.43635 * 5 4 3 7 7 C 1.48282 * 128.70737 * 179.88513 * 6 5 4 8 8 O 1.21495 * 119.99836 * 179.67165 * 7 6 5 9 9 N 1.34771 * 120.00050 * 359.66528 * 7 6 5 10 10 C 1.46507 * 120.00130 * 180.02562 * 9 7 6 11 11 C 1.54325 * 111.68848 * 298.98741 * 10 9 7 12 12 C 1.55048 * 103.93661 * 262.79100 * 11 10 9 13 13 C 1.55046 * 102.11311 * 319.94644 * 12 11 10 14 14 C 1.54321 * 103.93711 * 40.05451 * 13 12 11 15 15 H 1.09007 * 112.35953 * 97.60957 * 14 13 12 16 16 C 1.55735 * 109.24502 * 223.04029 * 14 13 12 17 17 N 1.47212 * 106.67553 * 95.05127 * 16 14 13 18 18 C 1.36938 * 126.70068 * 210.99123 * 17 16 14 19 19 H 1.08003 * 119.99895 * 162.12943 * 18 17 16 20 20 C 1.38813 * 120.00281 * 342.12254 * 18 17 16 21 21 N 1.31616 * 119.99726 * 159.74336 * 20 18 17 22 22 Si 1.86799 * 119.99954 * 339.74553 * 20 18 17 23 23 H 1.48501 * 109.47060 * 84.67951 * 22 20 18 24 24 H 1.48502 * 109.46827 * 204.67724 * 22 20 18 25 25 H 1.48500 * 109.47110 * 324.67561 * 22 20 18 26 26 C 1.47213 * 106.59569 * 30.99445 * 17 16 14 27 27 H 1.08996 * 109.46946 * 269.97413 * 1 2 3 28 28 H 1.09000 * 109.46984 * 29.97391 * 1 2 3 29 29 H 1.08996 * 109.46818 * 149.97359 * 1 2 3 30 30 H 0.97003 * 120.00113 * 0.02562 * 9 7 6 31 31 H 1.08998 * 110.52837 * 144.18026 * 11 10 9 32 32 H 1.08997 * 110.53357 * 21.41045 * 11 10 9 33 33 H 1.09007 * 110.90450 * 78.15098 * 12 11 10 34 34 H 1.09003 * 110.90540 * 201.74098 * 12 11 10 35 35 H 1.08998 * 110.54122 * 158.66852 * 13 12 11 36 36 H 1.09004 * 110.53853 * 281.44478 * 13 12 11 37 37 H 1.09007 * 110.17396 * 335.59534 * 16 14 13 38 38 H 1.09000 * 109.73814 * 214.26938 * 16 14 13 39 39 H 0.97007 * 119.99755 * 180.02562 * 21 20 18 40 40 H 1.08999 * 110.07410 * 209.48810 * 26 17 16 41 41 H 1.09002 * 110.07315 * 87.94708 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3228 1.0205 0.0000 4 8 3.4652 0.6267 -0.0005 5 7 3.6102 -0.5737 0.0042 6 6 2.4281 -1.1519 -0.0006 7 6 2.1035 -2.5988 -0.0001 8 8 0.9439 -2.9612 0.0009 9 7 3.0948 -3.5118 -0.0008 10 6 2.7742 -4.9413 -0.0009 11 6 1.9720 -5.3459 1.2539 12 6 3.0471 -5.9084 2.2192 13 6 3.9615 -6.7093 1.2567 14 6 4.0517 -5.8168 0.0009 15 1 4.9575 -5.2106 -0.0127 16 6 3.9132 -6.7048 -1.2710 17 7 2.4941 -6.6661 -1.6607 18 6 1.7879 -7.6629 -2.2793 19 1 0.7081 -7.6509 -2.2614 20 6 2.4598 -8.6888 -2.9297 21 7 1.8459 -9.8275 -3.1724 22 14 4.2353 -8.4533 -3.4605 23 1 5.1375 -8.7662 -2.3232 24 1 4.5370 -9.3615 -4.5960 25 1 4.4426 -7.0452 -3.8841 26 6 1.9826 -5.3465 -1.2554 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8897 -0.5142 30 1 4.0207 -3.2224 -0.0013 31 1 1.2394 -6.1145 1.0078 32 1 1.4825 -4.4760 1.6917 33 1 3.6001 -5.1006 2.6987 34 1 2.5963 -6.5647 2.9636 35 1 4.9486 -6.8514 1.6965 36 1 3.5094 -7.6703 1.0109 37 1 4.2124 -7.7291 -1.0487 38 1 4.5322 -6.3000 -2.0716 39 1 2.3155 -10.5445 -3.6265 40 1 0.9199 -5.4128 -1.0221 41 1 2.1467 -4.6209 -2.0520 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099184388.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:54 Heat of formation + Delta-G solvation = 86.740956 kcal Electronic energy + Delta-G solvation = -26068.209858 eV Core-core repulsion = 22374.311394 eV Total energy + Delta-G solvation = -3693.898464 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.00714 -41.86624 -39.82955 -36.50196 -36.25202 -35.89769 -34.81544 -33.83411 -31.26535 -30.57067 -29.90949 -27.21782 -26.68603 -25.76079 -23.71995 -22.93321 -22.46721 -21.39828 -20.49426 -20.17944 -19.60175 -18.90358 -18.10571 -17.64056 -16.87699 -16.41257 -16.04882 -15.64181 -15.53492 -15.32351 -15.15987 -14.97922 -14.63844 -14.43978 -14.42143 -13.93126 -13.31308 -13.15765 -13.04226 -12.94648 -12.90773 -12.62506 -12.36194 -12.29042 -12.15961 -12.00916 -11.78583 -11.71016 -11.54204 -11.46491 -11.40164 -11.30591 -10.88278 -10.31097 -9.12521 -8.19141 -5.48531 -0.41227 0.20627 1.26889 1.37235 1.41869 1.46644 1.75449 2.24090 2.33927 2.38388 2.71652 3.02936 3.23097 3.31321 3.55342 3.57774 3.68314 3.70521 4.06462 4.21265 4.25519 4.34776 4.37953 4.52871 4.58686 4.65885 4.68742 4.72829 4.76240 4.88070 4.92362 4.94705 5.08763 5.11583 5.17896 5.21871 5.44924 5.49369 5.63243 6.07346 6.20482 6.67616 6.84331 7.30595 7.48200 8.06239 9.00655 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.020041 B = 0.004129 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.791480 B = 6779.808592 C = 6992.931277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.066 3.934 3 N -0.363 5.363 4 O 0.349 5.651 5 N -0.318 5.318 6 C -0.053 4.053 7 C 0.606 3.394 8 O -0.525 6.525 9 N -0.682 5.682 10 C 0.170 3.830 11 C -0.112 4.112 12 C -0.111 4.111 13 C -0.112 4.112 14 C -0.094 4.094 15 H 0.123 0.877 16 C 0.104 3.896 17 N -0.615 5.615 18 C -0.233 4.233 19 H 0.057 0.943 20 C -0.033 4.033 21 N -0.957 5.957 22 Si 0.946 3.054 23 H -0.260 1.260 24 H -0.308 1.308 25 H -0.271 1.271 26 C 0.141 3.859 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.417 0.583 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.025 0.975 39 H 0.264 0.736 40 H 0.043 0.957 41 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.467 19.820 12.244 23.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 N -0.090 5.090 4 O 0.122 5.878 5 N -0.037 5.037 6 C -0.218 4.218 7 C 0.389 3.611 8 O -0.400 6.400 9 N -0.334 5.334 10 C 0.083 3.917 11 C -0.151 4.151 12 C -0.148 4.148 13 C -0.150 4.150 14 C -0.114 4.114 15 H 0.141 0.859 16 C -0.022 4.022 17 N -0.341 5.341 18 C -0.361 4.361 19 H 0.075 0.925 20 C -0.228 4.228 21 N -0.603 5.603 22 Si 0.775 3.225 23 H -0.186 1.186 24 H -0.237 1.237 25 H -0.196 1.196 26 C 0.014 3.986 27 H 0.128 0.872 28 H 0.125 0.875 29 H 0.112 0.888 30 H 0.255 0.745 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 5.531 19.990 12.129 24.027 hybrid contribution 0.091 -0.842 -1.075 1.368 sum 5.622 19.149 11.054 22.814 Atomic orbital electron populations 1.20498 0.81211 1.05810 1.05893 1.26639 1.01391 0.84430 0.97461 1.75086 0.91094 1.23945 1.18886 1.85051 1.23451 1.16308 1.63013 1.75336 1.22839 0.93057 1.12424 1.25962 0.88790 0.97972 1.09071 1.16567 0.85578 0.81884 0.77095 1.90844 1.19719 1.79733 1.49664 1.45717 1.09746 1.04933 1.73015 1.21589 0.96025 0.78381 0.95715 1.22622 0.97778 1.00539 0.94133 1.22560 0.95898 0.99659 0.96698 1.22455 1.01263 0.97586 0.93675 1.23202 0.96822 0.95885 0.95462 0.85889 1.22356 0.85771 0.98998 0.95031 1.44697 1.07872 1.12817 1.68693 1.18527 0.90592 0.99784 1.27220 0.92546 1.25585 1.01992 0.95354 0.99839 1.69942 1.39680 1.04184 1.46510 0.85964 0.81663 0.77048 0.77860 1.18592 1.23654 1.19632 1.21618 0.97144 0.86110 0.93711 0.87196 0.87532 0.88823 0.74483 0.92586 0.90926 0.89378 0.90498 0.88578 0.93135 0.92674 0.95733 0.92739 0.93824 0.96960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.22 71.24 0.73 -0.38 16 2 C 0.07 1.31 7.79 45.18 0.35 1.66 16 3 N -0.36 -7.18 12.22 -51.82 -0.63 -7.81 16 4 O 0.35 6.79 11.65 140.85 1.64 8.43 16 5 N -0.32 -6.56 12.13 -52.08 -0.63 -7.19 16 6 C -0.05 -1.19 7.56 44.29 0.33 -0.85 16 7 C 0.61 16.03 7.14 86.92 0.62 16.65 16 8 O -0.53 -16.60 13.85 -3.70 -0.05 -16.65 16 9 N -0.68 -16.96 5.19 -419.25 -2.18 -19.14 16 10 C 0.17 5.19 0.93 4.95 0.00 5.20 16 11 C -0.11 -3.29 5.50 31.74 0.17 -3.12 16 12 C -0.11 -2.52 6.92 32.00 0.22 -2.30 16 13 C -0.11 -2.90 6.27 31.74 0.20 -2.70 16 14 C -0.09 -2.70 3.79 -8.76 -0.03 -2.73 16 15 H 0.12 2.61 7.71 -2.38 -0.02 2.59 16 16 C 0.10 4.17 4.14 87.19 0.36 4.54 16 17 N -0.62 -29.70 3.21 -691.44 -2.22 -31.92 16 18 C -0.23 -13.61 10.66 84.03 0.90 -12.71 16 19 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 20 C -0.03 -1.96 5.45 84.86 0.46 -1.50 16 21 N -0.96 -60.53 13.97 21.65 0.30 -60.23 16 22 Si 0.95 46.41 24.36 68.60 1.67 48.09 16 23 H -0.26 -11.65 6.37 99.48 0.63 -11.02 16 24 H -0.31 -15.32 7.11 99.48 0.71 -14.62 16 25 H -0.27 -12.95 6.49 99.48 0.65 -12.30 16 26 C 0.14 5.82 5.23 86.50 0.45 6.28 16 27 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 1.62 7.31 -2.39 -0.02 1.61 16 30 H 0.42 8.20 8.15 -92.71 -0.76 7.45 16 31 H 0.06 1.99 7.58 -2.39 -0.02 1.97 16 32 H 0.07 2.07 6.64 -2.39 -0.02 2.05 16 33 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.05 1.64 7.57 -2.38 -0.02 1.62 16 37 H 0.06 2.38 5.26 -2.38 -0.01 2.37 16 38 H 0.03 1.01 6.16 -2.39 -0.01 1.00 16 39 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 40 H 0.04 1.96 7.52 -2.39 -0.02 1.94 16 41 H 0.01 0.54 8.06 -2.39 -0.02 0.52 16 Total: -1.00 -70.06 327.17 2.86 -67.20 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.19 Total: 11.21 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 4.77 Total: 8.03 kcal Atomic # 7 Polarization: -120.93 SS G_CDS: -5.36 Total: -126.30 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 1.59 Total: -8.22 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.67 Total: 48.09 kcal Total: -70.06 2.86 -67.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099184388.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.938 kcal (2) G-P(sol) polarization free energy of solvation -70.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds