Wall clock time and date at job start Tue Mar 31 2020 09:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39895 * 109.47222 * 2 1 4 4 F 1.39902 * 109.47007 * 120.00419 * 2 1 3 5 5 C 1.53004 * 109.47367 * 240.00055 * 2 1 3 6 6 C 1.52998 * 109.47367 * 180.02562 * 5 2 1 7 7 C 1.50704 * 109.47087 * 179.97438 * 6 5 2 8 8 O 1.21283 * 119.99862 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99935 * 179.97438 * 7 6 5 10 10 C 1.46504 * 120.00001 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.45590 * 34.97444 * 10 9 7 12 12 C 1.53048 * 109.45974 * 275.00340 * 10 9 7 13 13 C 1.53189 * 109.31089 * 178.61020 * 12 10 9 14 14 N 1.46931 * 108.77257 * 54.63935 * 13 12 10 15 15 C 1.36939 * 120.63293 * 126.41410 * 14 13 12 16 16 H 1.07998 * 119.99647 * 207.67067 * 15 14 13 17 17 C 1.38812 * 119.99795 * 27.66547 * 15 14 13 18 18 N 1.31613 * 120.00082 * 17.37085 * 17 15 14 19 19 Si 1.86801 * 119.99644 * 197.37120 * 17 15 14 20 20 H 1.48503 * 109.47331 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47307 * 120.00280 * 19 17 15 22 22 H 1.48502 * 109.46703 * 239.99920 * 19 17 15 23 23 C 1.46934 * 118.73955 * 306.38731 * 14 13 12 24 24 C 1.53040 * 109.45733 * 154.93706 * 10 9 7 25 25 H 1.08997 * 109.50185 * 61.44003 * 24 10 9 26 26 O 1.42898 * 109.49759 * 301.33665 * 24 10 9 27 27 H 1.08998 * 109.46964 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46972 * 299.99578 * 1 2 3 29 29 H 1.09003 * 109.46819 * 60.00298 * 1 2 3 30 30 H 1.09000 * 109.47008 * 300.00487 * 5 2 1 31 31 H 1.09001 * 109.46903 * 59.99492 * 5 2 1 32 32 H 1.08998 * 109.46964 * 300.00087 * 6 5 2 33 33 H 1.09000 * 109.46974 * 60.00401 * 6 5 2 34 34 H 0.96999 * 120.00416 * 0.02562 * 9 7 6 35 35 H 1.08994 * 109.49489 * 298.56572 * 12 10 9 36 36 H 1.09005 * 109.49192 * 58.63116 * 12 10 9 37 37 H 1.08993 * 109.58915 * 174.41999 * 13 12 10 38 38 H 1.08997 * 109.59082 * 294.71225 * 13 12 10 39 39 H 0.97003 * 119.99945 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.58756 * 173.39837 * 23 14 13 41 41 H 1.08993 * 109.58413 * 293.82402 * 23 14 13 42 42 H 0.96701 * 114.00113 * 180.02562 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3189 0.0000 4 9 1.9963 -0.6596 1.1423 5 6 2.0401 -0.7212 -1.2493 6 6 3.5700 -0.7218 -1.2489 7 6 4.0724 -1.4328 -2.4791 8 8 3.2842 -1.8932 -3.2777 9 7 5.3974 -1.5560 -2.6923 10 6 5.8858 -2.2466 -3.8885 11 1 5.2128 -2.0479 -4.7226 12 6 5.9369 -3.7529 -3.6224 13 6 6.4148 -4.4747 -4.8862 14 7 7.6964 -3.8925 -5.3073 15 6 8.7908 -4.6894 -5.5132 16 1 9.7843 -4.2873 -5.3804 17 6 8.6232 -6.0142 -5.8925 18 7 7.4701 -6.4175 -6.3824 19 14 10.0341 -7.2243 -5.7076 20 1 11.2140 -6.5256 -5.1375 21 1 9.6251 -8.3269 -4.8008 22 1 10.3851 -7.7823 -7.0383 23 6 7.7814 -2.4388 -5.5038 24 6 7.2881 -1.7398 -4.2330 25 1 7.9672 -1.9605 -3.4095 26 8 7.2448 -0.3283 -4.4512 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.9337 0.3057 -1.2487 33 1 3.9330 -1.2360 -0.3590 34 1 6.0278 -1.1874 -2.0539 35 1 6.6287 -3.9545 -2.8046 36 1 4.9423 -4.1088 -3.3537 37 1 6.5479 -5.5353 -4.6731 38 1 5.6770 -4.3510 -5.6789 39 1 7.3528 -7.3433 -6.6471 40 1 8.8160 -2.1562 -5.6982 41 1 7.1561 -2.1470 -6.3475 42 1 8.1011 0.0616 -4.6749 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099895890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:35 Heat of formation + Delta-G solvation = -181.373923 kcal Electronic energy + Delta-G solvation = -25890.280934 eV Core-core repulsion = 21734.066950 eV Total energy + Delta-G solvation = -4156.213984 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.154 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.20238 -47.17422 -39.82631 -38.02988 -35.43082 -34.52788 -34.14250 -32.02996 -30.98422 -29.87041 -28.55742 -25.85120 -24.54991 -22.45214 -22.01783 -21.50712 -20.16699 -19.43879 -17.87933 -17.52942 -17.06055 -16.68404 -16.43050 -15.95874 -15.77779 -15.54507 -14.85096 -14.19058 -14.07905 -13.90113 -13.63115 -13.57112 -13.43442 -13.38706 -13.14692 -12.87861 -12.75551 -12.51508 -12.29393 -12.07153 -12.03232 -11.59705 -11.41308 -11.16326 -11.06590 -10.90895 -10.69117 -10.34082 -10.27170 -9.97705 -9.84112 -9.73300 -9.42657 -8.76866 -8.47461 -6.79952 -5.87147 -3.31221 2.80713 3.22057 3.32752 3.40460 3.42362 3.58708 3.89586 4.12969 4.16753 4.35202 4.50275 4.73687 4.83586 4.97417 5.18485 5.23279 5.28055 5.30317 5.36017 5.46277 5.48114 5.53746 5.68819 5.74242 5.76100 5.95090 6.09594 6.30133 6.46130 6.50761 6.64164 6.74791 6.85084 7.26495 7.58290 7.71134 7.71849 7.89735 8.35213 8.41665 9.10846 9.73292 10.29025 11.21428 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.027003 B = 0.002856 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.688009 B = 9800.553920 C =10279.639415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.285 3.715 3 F -0.202 7.202 4 F -0.202 7.202 5 C -0.143 4.143 6 C -0.146 4.146 7 C 0.514 3.486 8 O -0.544 6.544 9 N -0.715 5.715 10 C 0.162 3.838 11 H 0.087 0.913 12 C -0.146 4.146 13 C 0.171 3.829 14 N -0.588 5.588 15 C -0.259 4.259 16 H 0.068 0.932 17 C 0.005 3.995 18 N -0.899 5.899 19 Si 0.904 3.096 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.289 1.289 23 C 0.121 3.879 24 C 0.080 3.920 25 H 0.056 0.944 26 O -0.571 6.571 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.397 0.603 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.024 0.976 39 H 0.255 0.745 40 H 0.060 0.940 41 H 0.029 0.971 42 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.222 13.157 12.639 20.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.249 3.751 3 F -0.183 7.183 4 F -0.183 7.183 5 C -0.181 4.181 6 C -0.186 4.186 7 C 0.300 3.700 8 O -0.422 6.422 9 N -0.365 5.365 10 C 0.058 3.942 11 H 0.105 0.895 12 C -0.187 4.187 13 C 0.045 3.955 14 N -0.312 5.312 15 C -0.388 4.388 16 H 0.085 0.915 17 C -0.195 4.195 18 N -0.542 5.542 19 Si 0.734 3.266 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.216 1.216 23 C -0.007 4.007 24 C 0.019 3.981 25 H 0.074 0.926 26 O -0.376 6.376 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.230 0.770 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.042 0.958 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -10.429 12.580 12.145 20.360 hybrid contribution 1.736 -0.354 0.374 1.811 sum -8.693 12.226 12.519 19.539 Atomic orbital electron populations 1.22755 0.91460 1.05629 1.05302 1.21214 0.93928 0.75694 0.84304 1.93006 1.90588 1.37853 1.96893 1.93009 1.90587 1.80954 1.53772 1.22376 0.95914 1.03571 0.96283 1.21629 0.95969 1.02931 0.98109 1.20350 0.82681 0.79751 0.87200 1.90710 1.55238 1.49137 1.47108 1.46091 1.06611 1.58087 1.25671 1.21012 0.93868 0.92101 0.87205 0.89461 1.22601 1.00868 0.93193 1.01998 1.20825 0.85959 0.98395 0.90335 1.44061 1.09233 1.00028 1.77917 1.19201 0.86275 0.92442 1.40928 0.91474 1.25073 0.97070 0.98998 0.98313 1.70045 1.24158 1.16362 1.43663 0.86209 0.81713 0.81270 0.77454 1.20226 1.21441 1.21631 1.21530 0.99088 0.86588 0.93493 1.22776 0.95938 0.80076 0.99331 0.92596 1.86478 1.36210 1.21761 1.93120 0.89089 0.90116 0.89116 0.87891 0.87933 0.88286 0.88316 0.76984 0.92357 0.91952 0.88858 0.95821 0.93470 0.92156 0.95322 0.77979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.22 9.38 37.16 0.35 -0.87 16 2 C 0.28 2.55 2.11 -26.73 -0.06 2.50 16 3 F -0.20 -2.10 16.54 2.25 0.04 -2.06 16 4 F -0.20 -2.11 16.54 2.25 0.04 -2.08 16 5 C -0.14 -1.40 4.09 -26.73 -0.11 -1.50 16 6 C -0.15 -1.55 5.46 -27.88 -0.15 -1.71 16 7 C 0.51 7.58 7.79 -10.99 -0.09 7.49 16 8 O -0.54 -10.06 15.64 5.55 0.09 -9.97 16 9 N -0.72 -10.43 4.92 -53.76 -0.26 -10.70 16 10 C 0.16 2.89 2.12 -67.88 -0.14 2.75 16 11 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 12 C -0.15 -2.85 5.65 -26.61 -0.15 -3.00 16 13 C 0.17 4.07 5.31 -3.71 -0.02 4.05 16 14 N -0.59 -14.32 3.00 -172.32 -0.52 -14.84 16 15 C -0.26 -6.89 9.59 -15.06 -0.14 -7.03 16 16 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 17 C 0.00 0.13 4.91 -17.43 -0.09 0.04 16 18 N -0.90 -25.71 11.19 55.49 0.62 -25.09 16 19 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 C 0.12 2.44 6.14 -3.70 -0.02 2.41 16 24 C 0.08 1.34 3.14 -26.61 -0.08 1.26 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 O -0.57 -8.44 13.16 -35.23 -0.46 -8.90 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.10 1.01 8.10 -51.93 -0.42 0.59 16 31 H 0.10 1.00 8.10 -51.93 -0.42 0.58 16 32 H 0.10 0.95 7.80 -51.93 -0.41 0.54 16 33 H 0.10 0.93 7.80 -51.93 -0.41 0.53 16 34 H 0.40 4.75 8.60 -40.82 -0.35 4.40 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.09 2.47 6.04 -51.93 -0.31 2.15 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.37 3.94 9.08 45.56 0.41 4.36 16 LS Contribution 349.96 15.07 5.27 5.27 Total: -1.00 -32.21 349.96 -6.56 -38.77 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -5.64 Total: 7.09 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -0.71 Total: 6.38 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.16 Total: -50.63 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.38 Total: -18.88 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.07 Total: -4.14 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.21 -6.56 -38.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099895890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.608 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds