Wall clock time and date at job start Tue Mar 31 2020 09:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 F 1.39905 * 109.46538 * 2 1 4 4 F 1.39897 * 109.47007 * 240.00250 * 2 1 3 5 5 C 1.52995 * 109.46969 * 119.99976 * 2 1 3 6 6 C 1.53006 * 109.46663 * 180.02562 * 5 2 1 7 7 C 1.50696 * 109.46930 * 180.02562 * 6 5 2 8 8 O 1.21282 * 120.00305 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99798 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99706 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.46134 * 324.97153 * 10 9 7 12 12 C 1.53043 * 109.46002 * 84.93227 * 10 9 7 13 13 C 1.53185 * 109.31380 * 58.64970 * 12 10 9 14 14 N 1.46929 * 108.77590 * 54.64014 * 13 12 10 15 15 C 1.36936 * 120.63495 * 126.41109 * 14 13 12 16 16 H 1.07998 * 119.99901 * 207.67317 * 15 14 13 17 17 C 1.38808 * 119.99799 * 27.66612 * 15 14 13 18 18 N 1.31615 * 119.99919 * 17.37347 * 17 15 14 19 19 Si 1.86803 * 119.99890 * 197.36546 * 17 15 14 20 20 H 1.48503 * 109.47142 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46750 * 120.00271 * 19 17 15 22 22 H 1.48496 * 109.47304 * 240.00264 * 19 17 15 23 23 C 1.46929 * 118.73367 * 306.39079 * 14 13 12 24 24 C 1.53040 * 109.45910 * 204.99692 * 10 9 7 25 25 H 1.09000 * 109.52142 * 181.37836 * 24 10 9 26 26 O 1.42906 * 109.49562 * 61.29712 * 24 10 9 27 27 H 1.09001 * 109.47033 * 299.99640 * 1 2 3 28 28 H 1.08998 * 109.47438 * 59.99849 * 1 2 3 29 29 H 1.09002 * 109.47002 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47212 * 60.00527 * 5 2 1 31 31 H 1.09002 * 109.47087 * 299.99823 * 5 2 1 32 32 H 1.08994 * 109.47549 * 59.99982 * 6 5 2 33 33 H 1.09002 * 109.47040 * 299.99626 * 6 5 2 34 34 H 0.96991 * 119.99805 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.49504 * 298.69815 * 12 10 9 36 36 H 1.08995 * 109.49650 * 178.60818 * 12 10 9 37 37 H 1.08998 * 109.58815 * 294.84988 * 13 12 10 38 38 H 1.09006 * 109.58566 * 174.41925 * 13 12 10 39 39 H 0.97007 * 119.99487 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.58514 * 173.39639 * 23 14 13 41 41 H 1.09003 * 109.58578 * 293.81373 * 23 14 13 42 42 H 0.96701 * 113.99256 * 180.16281 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0400 -0.7212 1.2492 6 6 3.5701 -0.7206 1.2495 7 6 4.0724 -1.4316 2.4796 8 8 3.2844 -1.8929 3.2778 9 7 5.3976 -1.5539 2.6933 10 6 5.8859 -2.2445 3.8894 11 1 5.2131 -2.0458 4.7236 12 6 5.9368 -3.7508 3.6234 13 6 6.8561 -4.0235 2.4288 14 7 8.1663 -3.4126 2.6912 15 6 9.3128 -4.1567 2.6062 16 1 10.1767 -3.8867 3.1953 17 6 9.3644 -5.2580 1.7628 18 7 8.4710 -5.3969 0.8064 19 14 10.7020 -6.5428 1.9854 20 1 11.5747 -6.1569 3.1232 21 1 10.0797 -7.8619 2.2646 22 1 11.5145 -6.6314 0.7456 23 6 8.2231 -1.9880 3.0460 24 6 7.2884 -1.7380 4.2337 25 1 7.6626 -2.2687 5.1092 26 8 7.2347 -0.3373 4.5119 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6767 -1.7489 1.2492 31 1 1.6767 -0.2074 2.1392 32 1 3.9331 0.3071 1.2497 33 1 3.9337 -1.2343 0.3595 34 1 6.0278 -1.1846 2.0551 35 1 4.9337 -4.1150 3.4012 36 1 6.3234 -4.2629 4.5044 37 1 6.4236 -3.5881 1.5280 38 1 6.9744 -5.0991 2.2968 39 1 8.5074 -6.1664 0.2168 40 1 9.2433 -1.7203 3.3212 41 1 7.9022 -1.3865 2.1955 42 1 8.0910 0.0522 4.7359 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099895892.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:41 Heat of formation + Delta-G solvation = -179.080911 kcal Electronic energy + Delta-G solvation = -26389.282124 eV Core-core repulsion = 22233.167573 eV Total energy + Delta-G solvation = -4156.114551 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.154 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.07855 -47.05084 -39.87126 -38.00809 -35.46673 -34.32312 -33.94744 -31.84473 -30.89422 -29.96088 -28.59477 -25.69931 -24.83518 -22.36899 -21.97869 -21.62479 -20.40163 -18.74784 -17.75895 -17.46842 -17.12107 -16.59247 -16.32455 -15.93099 -15.56681 -15.16281 -14.94948 -14.26178 -14.16933 -13.85671 -13.74356 -13.45465 -13.37976 -13.34532 -13.09934 -12.80558 -12.65714 -12.41694 -12.26159 -12.02538 -11.89846 -11.68989 -11.28501 -11.20659 -10.97757 -10.92412 -10.69571 -10.38275 -10.22693 -9.98107 -9.86139 -9.53623 -9.45040 -8.62716 -8.53750 -6.80678 -5.89539 -3.33635 2.93007 3.31245 3.36073 3.39699 3.41235 3.70379 4.00534 4.24326 4.26990 4.35065 4.50250 4.87454 4.94979 5.08248 5.25332 5.26941 5.32978 5.35136 5.43594 5.50816 5.55656 5.56665 5.68174 5.81568 5.86542 5.94353 6.04337 6.24173 6.42559 6.51940 6.62538 6.67029 6.93197 7.24793 7.56111 7.69407 7.86173 7.89419 8.32874 8.53166 9.08690 9.71033 10.26209 11.18587 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.018364 B = 0.003548 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.389194 B = 7889.430689 C = 8697.939407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.284 3.716 3 F -0.203 7.203 4 F -0.200 7.200 5 C -0.141 4.141 6 C -0.148 4.148 7 C 0.518 3.482 8 O -0.554 6.554 9 N -0.703 5.703 10 C 0.166 3.834 11 H 0.078 0.922 12 C -0.153 4.153 13 C 0.172 3.828 14 N -0.587 5.587 15 C -0.259 4.259 16 H 0.067 0.933 17 C 0.006 3.994 18 N -0.898 5.898 19 Si 0.904 3.096 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.290 1.290 23 C 0.118 3.882 24 C 0.075 3.925 25 H 0.066 0.934 26 O -0.571 6.571 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.403 0.597 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.022 0.978 38 H 0.090 0.910 39 H 0.255 0.745 40 H 0.059 0.941 41 H 0.023 0.977 42 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.619 10.680 1.044 15.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.248 3.752 3 F -0.184 7.184 4 F -0.181 7.181 5 C -0.180 4.180 6 C -0.188 4.188 7 C 0.304 3.696 8 O -0.434 6.434 9 N -0.354 5.354 10 C 0.061 3.939 11 H 0.096 0.904 12 C -0.193 4.193 13 C 0.046 3.954 14 N -0.311 5.311 15 C -0.389 4.389 16 H 0.085 0.915 17 C -0.193 4.193 18 N -0.542 5.542 19 Si 0.733 3.267 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.216 1.216 23 C -0.009 4.009 24 C 0.015 3.985 25 H 0.084 0.916 26 O -0.375 6.375 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.239 0.761 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.040 0.960 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.040 0.960 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -12.772 10.137 1.342 16.361 hybrid contribution 1.755 -0.407 -0.342 1.834 sum -11.017 9.730 1.000 14.732 Atomic orbital electron populations 1.22752 0.91573 1.05563 1.05199 1.21209 0.93821 0.75711 0.84445 1.93005 1.90604 1.37861 1.96906 1.93022 1.90558 1.80915 1.53643 1.22357 0.95999 1.03461 0.96140 1.21623 0.95800 1.02955 0.98382 1.20307 0.82604 0.79604 0.87061 1.90658 1.55411 1.49886 1.47397 1.45939 1.06621 1.57399 1.25455 1.20824 0.93337 0.92422 0.87327 0.90394 1.22587 1.01003 0.93338 1.02400 1.20797 0.82843 1.00385 0.91365 1.44022 1.03139 1.02972 1.80997 1.19195 0.92421 1.08107 1.19154 0.91530 1.25050 0.98275 1.00794 0.95221 1.70043 1.37191 1.29625 1.17359 0.86214 0.81224 0.81709 0.77536 1.20221 1.21444 1.21646 1.21539 0.97198 0.88073 0.94115 1.22748 0.96133 0.80843 0.98816 0.91620 1.86481 1.35619 1.23254 1.92190 0.89223 0.90141 0.89123 0.87944 0.88114 0.88323 0.88018 0.76150 0.91867 0.91519 0.96035 0.89218 0.93519 0.92269 0.95960 0.77985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.39 9.38 37.16 0.35 -1.04 16 2 C 0.28 2.92 2.11 -26.73 -0.06 2.86 16 3 F -0.20 -2.36 16.54 2.25 0.04 -2.32 16 4 F -0.20 -2.45 16.54 2.25 0.04 -2.41 16 5 C -0.14 -1.55 4.09 -26.73 -0.11 -1.66 16 6 C -0.15 -1.85 5.46 -27.88 -0.15 -2.00 16 7 C 0.52 8.32 7.79 -10.98 -0.09 8.23 16 8 O -0.55 -10.37 15.64 5.56 0.09 -10.29 16 9 N -0.70 -11.60 4.15 -53.76 -0.22 -11.82 16 10 C 0.17 2.93 2.47 -67.89 -0.17 2.76 16 11 H 0.08 1.44 7.58 -51.93 -0.39 1.05 16 12 C -0.15 -2.97 5.77 -26.61 -0.15 -3.12 16 13 C 0.17 3.93 5.05 -3.71 -0.02 3.91 16 14 N -0.59 -13.76 3.00 -172.32 -0.52 -14.28 16 15 C -0.26 -6.77 9.59 -15.06 -0.14 -6.92 16 16 H 0.07 1.70 7.89 -52.49 -0.41 1.29 16 17 C 0.01 0.16 4.91 -17.43 -0.09 0.07 16 18 N -0.90 -25.21 11.19 55.49 0.62 -24.59 16 19 Si 0.90 21.01 29.59 -169.99 -5.03 15.98 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.12 2.25 5.84 -3.71 -0.02 2.23 16 24 C 0.08 1.26 3.36 -26.61 -0.09 1.17 16 25 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 26 O -0.57 -8.42 13.21 -35.23 -0.47 -8.88 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.10 1.13 8.10 -51.93 -0.42 0.71 16 31 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 32 H 0.10 1.12 7.80 -51.93 -0.41 0.72 16 33 H 0.10 1.26 7.80 -51.93 -0.41 0.86 16 34 H 0.40 6.41 6.87 -40.82 -0.28 6.13 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.02 0.52 7.74 -51.93 -0.40 0.11 16 38 H 0.09 2.34 6.04 -51.93 -0.31 2.03 16 39 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.06 1.09 7.93 -51.93 -0.41 0.67 16 41 H 0.02 0.43 6.64 -51.93 -0.34 0.09 16 42 H 0.37 3.93 9.08 45.56 0.41 4.34 16 LS Contribution 345.74 15.07 5.21 5.21 Total: -1.00 -31.18 345.74 -6.45 -37.62 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -5.47 Total: 9.28 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -0.74 Total: 6.51 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.12 Total: -50.70 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.38 Total: -19.17 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.07 Total: -4.73 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.18 -6.45 -37.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099895892.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.456 kcal (2) G-P(sol) polarization free energy of solvation -31.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds