Wall clock time and date at job start Tue Mar 31 2020 09:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 F 1.39905 * 109.46538 * 2 1 4 4 F 1.39897 * 109.47007 * 240.00250 * 2 1 3 5 5 C 1.52995 * 109.46969 * 119.99976 * 2 1 3 6 6 C 1.53006 * 109.46663 * 180.02562 * 5 2 1 7 7 C 1.50696 * 109.46930 * 180.02562 * 6 5 2 8 8 O 1.21282 * 120.00305 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99798 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99706 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.46134 * 324.97153 * 10 9 7 12 12 C 1.53043 * 109.46002 * 84.93227 * 10 9 7 13 13 C 1.53185 * 109.31380 * 58.64970 * 12 10 9 14 14 N 1.46929 * 108.77590 * 54.64014 * 13 12 10 15 15 C 1.36936 * 120.63495 * 126.41109 * 14 13 12 16 16 H 1.07998 * 119.99901 * 207.67317 * 15 14 13 17 17 C 1.38808 * 119.99799 * 27.66612 * 15 14 13 18 18 N 1.31615 * 119.99919 * 17.37347 * 17 15 14 19 19 Si 1.86803 * 119.99890 * 197.36546 * 17 15 14 20 20 H 1.48503 * 109.47142 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46750 * 120.00271 * 19 17 15 22 22 H 1.48496 * 109.47304 * 240.00264 * 19 17 15 23 23 C 1.46929 * 118.73367 * 306.39079 * 14 13 12 24 24 C 1.53040 * 109.45910 * 204.99692 * 10 9 7 25 25 H 1.09000 * 109.52142 * 181.37836 * 24 10 9 26 26 O 1.42906 * 109.49562 * 61.29712 * 24 10 9 27 27 H 1.09001 * 109.47033 * 299.99640 * 1 2 3 28 28 H 1.08998 * 109.47438 * 59.99849 * 1 2 3 29 29 H 1.09002 * 109.47002 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47212 * 60.00527 * 5 2 1 31 31 H 1.09002 * 109.47087 * 299.99823 * 5 2 1 32 32 H 1.08994 * 109.47549 * 59.99982 * 6 5 2 33 33 H 1.09002 * 109.47040 * 299.99626 * 6 5 2 34 34 H 0.96991 * 119.99805 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.49504 * 298.69815 * 12 10 9 36 36 H 1.08995 * 109.49650 * 178.60818 * 12 10 9 37 37 H 1.08998 * 109.58815 * 294.84988 * 13 12 10 38 38 H 1.09006 * 109.58566 * 174.41925 * 13 12 10 39 39 H 0.97007 * 119.99487 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.58514 * 173.39639 * 23 14 13 41 41 H 1.09003 * 109.58578 * 293.81373 * 23 14 13 42 42 H 0.96701 * 113.99256 * 180.16281 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0400 -0.7212 1.2492 6 6 3.5701 -0.7206 1.2495 7 6 4.0724 -1.4316 2.4796 8 8 3.2844 -1.8929 3.2778 9 7 5.3976 -1.5539 2.6933 10 6 5.8859 -2.2445 3.8894 11 1 5.2131 -2.0458 4.7236 12 6 5.9368 -3.7508 3.6234 13 6 6.8561 -4.0235 2.4288 14 7 8.1663 -3.4126 2.6912 15 6 9.3128 -4.1567 2.6062 16 1 10.1767 -3.8867 3.1953 17 6 9.3644 -5.2580 1.7628 18 7 8.4710 -5.3969 0.8064 19 14 10.7020 -6.5428 1.9854 20 1 11.5747 -6.1569 3.1232 21 1 10.0797 -7.8619 2.2646 22 1 11.5145 -6.6314 0.7456 23 6 8.2231 -1.9880 3.0460 24 6 7.2884 -1.7380 4.2337 25 1 7.6626 -2.2687 5.1092 26 8 7.2347 -0.3373 4.5119 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6767 -1.7489 1.2492 31 1 1.6767 -0.2074 2.1392 32 1 3.9331 0.3071 1.2497 33 1 3.9337 -1.2343 0.3595 34 1 6.0278 -1.1846 2.0551 35 1 4.9337 -4.1150 3.4012 36 1 6.3234 -4.2629 4.5044 37 1 6.4236 -3.5881 1.5280 38 1 6.9744 -5.0991 2.2968 39 1 8.5074 -6.1664 0.2168 40 1 9.2433 -1.7203 3.3212 41 1 7.9022 -1.3865 2.1955 42 1 8.0910 0.0522 4.7359 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099895892.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:40 Heat of formation + Delta-G solvation = -200.909557 kcal Electronic energy + Delta-G solvation = -26390.228685 eV Core-core repulsion = 22233.167573 eV Total energy + Delta-G solvation = -4157.061113 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.154 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.94238 -47.92897 -41.25070 -39.43261 -36.94638 -35.65794 -35.08637 -33.54663 -32.15323 -31.25114 -30.12091 -27.33675 -26.01295 -23.94251 -23.60381 -22.61467 -21.63580 -20.29830 -18.88503 -18.60919 -18.51495 -17.97836 -17.23113 -17.05147 -16.83163 -16.74228 -16.46306 -15.81656 -15.62893 -15.24198 -14.89789 -14.87398 -14.51367 -14.30566 -14.18011 -14.08760 -13.74056 -13.53719 -13.33821 -13.25268 -13.12048 -13.01575 -12.82735 -12.76995 -12.36738 -12.24712 -12.15718 -11.99238 -11.84676 -11.79869 -11.29975 -11.04030 -10.86023 -10.52351 -10.01676 -8.71990 -7.90031 -5.35880 1.46469 1.49747 1.58866 1.64681 2.17342 2.49069 2.86799 3.14585 3.23306 3.26585 3.40398 3.49799 3.65701 3.81829 3.91925 4.05806 4.11949 4.17736 4.25565 4.37861 4.50564 4.54289 4.63799 4.65651 4.69479 4.87453 4.95207 4.96198 4.96335 5.04404 5.04712 5.13384 5.40857 5.53746 5.62773 5.69763 6.34758 6.55255 6.88156 7.11458 7.23544 7.80389 8.31249 9.16253 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.018364 B = 0.003548 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.389194 B = 7889.430689 C = 8697.939407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.281 3.719 3 F -0.211 7.211 4 F -0.214 7.214 5 C -0.138 4.138 6 C -0.142 4.142 7 C 0.515 3.485 8 O -0.581 6.581 9 N -0.704 5.704 10 C 0.168 3.832 11 H 0.075 0.925 12 C -0.140 4.140 13 C 0.184 3.816 14 N -0.602 5.602 15 C -0.264 4.264 16 H 0.072 0.928 17 C -0.047 4.047 18 N -0.931 5.931 19 Si 0.965 3.035 20 H -0.265 1.265 21 H -0.293 1.293 22 H -0.294 1.294 23 C 0.118 3.882 24 C 0.096 3.904 25 H 0.069 0.931 26 O -0.570 6.570 27 H 0.104 0.896 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.406 0.594 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.004 0.996 38 H 0.053 0.947 39 H 0.249 0.751 40 H 0.068 0.932 41 H 0.025 0.975 42 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.732 11.972 1.872 16.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.245 3.755 3 F -0.192 7.192 4 F -0.195 7.195 5 C -0.177 4.177 6 C -0.182 4.182 7 C 0.303 3.697 8 O -0.462 6.462 9 N -0.354 5.354 10 C 0.062 3.938 11 H 0.094 0.906 12 C -0.180 4.180 13 C 0.058 3.942 14 N -0.327 5.327 15 C -0.394 4.394 16 H 0.090 0.910 17 C -0.243 4.243 18 N -0.577 5.577 19 Si 0.793 3.207 20 H -0.189 1.189 21 H -0.220 1.220 22 H -0.221 1.221 23 C -0.008 4.008 24 C 0.034 3.966 25 H 0.087 0.913 26 O -0.378 6.378 27 H 0.123 0.877 28 H 0.106 0.894 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.120 0.880 34 H 0.242 0.758 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.022 0.978 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.043 0.957 42 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -12.863 11.477 2.188 17.377 hybrid contribution 1.807 -0.731 -0.579 2.034 sum -11.056 10.746 1.609 15.502 Atomic orbital electron populations 1.22781 0.88884 1.06666 1.06358 1.21475 0.95633 0.74976 0.83429 1.92988 1.90915 1.38420 1.96882 1.92997 1.90932 1.81203 1.54388 1.22353 0.94735 1.03659 0.96921 1.21634 0.97021 1.03169 0.96395 1.20876 0.82104 0.79087 0.87610 1.90641 1.55925 1.51054 1.48602 1.45955 1.07057 1.57235 1.25183 1.20695 0.94120 0.91172 0.87771 0.90650 1.22383 0.99717 0.95103 1.00767 1.20492 0.83513 0.97980 0.92166 1.44195 1.02521 1.04865 1.81128 1.19539 0.93165 1.08322 1.18331 0.91017 1.25762 1.00458 1.02731 0.95327 1.70184 1.39112 1.29984 1.18427 0.85251 0.78926 0.79068 0.77428 1.18885 1.22000 1.22087 1.21681 0.98547 0.85529 0.95080 1.22336 0.94460 0.82102 0.97652 0.91269 1.86452 1.37504 1.21774 1.92034 0.87700 0.89400 0.88088 0.88142 0.87460 0.86880 0.87982 0.75788 0.92259 0.91264 0.97776 0.92830 0.94141 0.91312 0.95688 0.75485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.33 9.38 71.98 0.68 -1.66 16 2 C 0.28 5.37 2.11 30.59 0.06 5.43 16 3 F -0.21 -4.59 16.54 44.97 0.74 -3.84 16 4 F -0.21 -5.05 16.54 44.97 0.74 -4.30 16 5 C -0.14 -2.86 4.09 30.59 0.13 -2.73 16 6 C -0.14 -3.42 5.46 29.85 0.16 -3.26 16 7 C 0.52 16.12 7.79 87.65 0.68 16.81 16 8 O -0.58 -21.35 15.64 -3.04 -0.05 -21.40 16 9 N -0.70 -22.55 4.15 -442.39 -1.84 -24.39 16 10 C 0.17 5.74 2.47 45.02 0.11 5.85 16 11 H 0.08 2.68 7.58 -2.39 -0.02 2.67 16 12 C -0.14 -5.39 5.77 30.67 0.18 -5.22 16 13 C 0.18 8.58 5.05 86.36 0.44 9.02 16 14 N -0.60 -28.07 3.00 -699.10 -2.09 -30.16 16 15 C -0.26 -13.66 9.59 84.03 0.81 -12.86 16 16 H 0.07 3.58 7.89 -2.91 -0.02 3.56 16 17 C -0.05 -2.52 4.91 84.86 0.42 -2.10 16 18 N -0.93 -53.45 11.19 21.65 0.24 -53.21 16 19 Si 0.96 43.43 29.59 68.60 2.03 45.46 16 20 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 23 C 0.12 4.31 5.84 86.36 0.50 4.81 16 24 C 0.10 2.99 3.36 30.67 0.10 3.10 16 25 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 26 O -0.57 -15.10 13.21 -148.98 -1.97 -17.07 16 27 H 0.10 0.97 8.14 -2.39 -0.02 0.96 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.10 2.12 8.10 -2.39 -0.02 2.10 16 31 H 0.11 2.08 8.10 -2.39 -0.02 2.06 16 32 H 0.11 2.39 7.80 -2.39 -0.02 2.37 16 33 H 0.10 2.47 7.80 -2.39 -0.02 2.45 16 34 H 0.41 12.50 6.87 -92.71 -0.64 11.86 16 35 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.00 0.20 7.74 -2.39 -0.02 0.19 16 38 H 0.05 2.89 6.04 -2.38 -0.01 2.87 16 39 H 0.25 13.96 8.31 -92.70 -0.77 13.19 16 40 H 0.07 2.37 7.93 -2.39 -0.02 2.35 16 41 H 0.03 0.92 6.64 -2.39 -0.02 0.91 16 42 H 0.40 6.91 9.08 -74.06 -0.67 6.23 16 Total: -1.00 -66.50 345.74 1.82 -64.68 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: -0.26 Total: 27.04 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: 4.27 Total: 17.19 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -3.69 Total: -107.76 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -2.02 Total: -38.47 kcal Atomic # 9 Polarization: -9.63 SS G_CDS: 1.49 Total: -8.14 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -66.50 1.82 -64.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099895892.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.230 kcal (2) G-P(sol) polarization free energy of solvation -66.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds