Wall clock time and date at job start Tue Mar 31 2020 09:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46996 * 2 1 4 4 C 1.50699 * 109.47307 * 120.00174 * 2 1 3 5 5 O 1.21279 * 120.00103 * 119.99579 * 4 2 1 6 6 N 1.34776 * 119.99957 * 300.00559 * 4 2 1 7 7 C 1.46498 * 119.99997 * 179.97438 * 6 4 2 8 8 H 1.08998 * 109.44731 * 35.02909 * 7 6 4 9 9 C 1.53102 * 109.50552 * 275.05087 * 7 6 4 10 10 C 1.53195 * 109.33086 * 178.63137 * 9 7 6 11 11 N 1.46924 * 108.77703 * 54.63546 * 10 9 7 12 12 C 1.36937 * 120.63313 * 126.36931 * 11 10 9 13 13 H 1.07999 * 119.99945 * 331.86263 * 12 11 10 14 14 C 1.38809 * 119.99917 * 151.86260 * 12 11 10 15 15 N 1.31621 * 120.00237 * 343.06122 * 14 12 11 16 16 Si 1.86801 * 119.99944 * 163.06019 * 14 12 11 17 17 H 1.48493 * 109.47156 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46885 * 119.99698 * 16 14 12 19 19 H 1.48501 * 109.47330 * 239.99853 * 16 14 12 20 20 C 1.46934 * 118.73772 * 306.39118 * 11 10 9 21 21 C 1.53037 * 109.46173 * 154.99497 * 7 6 4 22 22 H 1.09006 * 109.50051 * 301.37049 * 21 7 6 23 23 O 1.42905 * 109.49713 * 61.43358 * 21 7 6 24 24 C 1.53000 * 109.47169 * 240.00270 * 2 1 3 25 25 F 1.39905 * 109.47126 * 299.99827 * 24 2 1 26 26 F 1.39903 * 109.47034 * 59.99930 * 24 2 1 27 27 H 1.09002 * 109.47619 * 299.99722 * 1 2 3 28 28 H 1.09000 * 109.47108 * 59.99881 * 1 2 3 29 29 H 1.09002 * 109.47206 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47066 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47289 * 300.00009 * 3 2 1 32 32 H 1.08997 * 109.46679 * 60.00203 * 3 2 1 33 33 H 0.97002 * 119.99913 * 359.97438 * 6 4 2 34 34 H 1.08994 * 109.49303 * 58.67243 * 9 7 6 35 35 H 1.09001 * 109.51208 * 298.60190 * 9 7 6 36 36 H 1.08998 * 109.58377 * 294.84434 * 10 9 7 37 37 H 1.08998 * 109.58574 * 174.41962 * 10 9 7 38 38 H 0.97000 * 120.00221 * 180.02562 * 15 14 12 39 39 H 1.09007 * 109.58433 * 293.82387 * 20 11 10 40 40 H 1.08997 * 109.70448 * 173.46953 * 20 11 10 41 41 H 0.96699 * 113.99707 * 179.97438 * 23 21 7 42 42 H 1.08997 * 109.47314 * 180.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7295 -1.6965 1.1191 6 7 1.7067 -0.2501 2.4545 7 6 2.1946 -0.9410 3.6507 8 1 3.1939 -1.3328 3.4612 9 6 1.2507 -2.0964 3.9943 10 6 1.7830 -2.8371 5.2252 11 7 1.9730 -1.8692 6.3141 12 6 1.3994 -2.0767 7.5401 13 1 0.4848 -2.6456 7.6191 14 6 1.9936 -1.5559 8.6814 15 7 3.2487 -1.1610 8.6483 16 14 1.0118 -1.4155 10.2644 17 1 -0.3649 -1.9246 10.0398 18 1 1.6687 -2.2184 11.3271 19 1 0.9515 0.0074 10.6850 20 6 2.7897 -0.6740 6.0624 21 6 2.2462 0.0423 4.8221 22 1 2.9000 0.8768 4.5682 23 8 0.9311 0.5319 5.0922 24 6 2.0400 -0.7212 -1.2493 25 9 1.5737 -2.0402 -1.2493 26 9 1.5736 -0.0616 -2.3915 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9562 0.8900 33 1 1.1492 0.5388 2.5436 34 1 1.1962 -2.7847 3.1510 35 1 0.2567 -1.7033 4.2079 36 1 2.7360 -3.3080 4.9844 37 1 1.0649 -3.5971 5.5331 38 1 3.6640 -0.7974 9.4459 39 1 3.8250 -0.9686 5.8899 40 1 2.7384 -0.0060 6.9222 41 1 0.8886 1.1614 5.8250 42 1 3.1299 -0.7216 -1.2491 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099998362.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:58 Heat of formation + Delta-G solvation = -175.534071 kcal Electronic energy + Delta-G solvation = -27002.531527 eV Core-core repulsion = 22846.570778 eV Total energy + Delta-G solvation = -4155.960749 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.154 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.08885 -47.02551 -40.21675 -38.15880 -35.44136 -34.83565 -34.38725 -32.02820 -29.41953 -29.09807 -27.79777 -26.52264 -25.33596 -23.23118 -22.27201 -21.51656 -19.84415 -19.28919 -18.02018 -17.37833 -17.26238 -16.93808 -16.11291 -15.80589 -15.37184 -15.04343 -14.88334 -14.38622 -13.92404 -13.90610 -13.74543 -13.51873 -13.38437 -13.29392 -13.06873 -12.74574 -12.53236 -12.46533 -12.37041 -12.15862 -12.04342 -11.59151 -11.30169 -11.19870 -10.87243 -10.84183 -10.61453 -10.52246 -10.22341 -10.07800 -9.83608 -9.62769 -9.23685 -8.78516 -8.54283 -6.71824 -5.85340 -3.26327 2.57964 3.01625 3.32659 3.41787 3.44486 3.54022 4.02403 4.23339 4.27289 4.44723 4.66425 4.80020 4.86232 5.00571 5.21074 5.24641 5.32773 5.34831 5.38315 5.40717 5.45632 5.52473 5.72370 5.83856 5.89707 5.98277 6.15775 6.21102 6.41786 6.50913 6.75793 6.78305 6.93211 7.12314 7.37802 7.58702 7.75345 8.16826 8.23925 8.38941 9.14245 9.77144 10.34008 11.23545 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.034873 B = 0.003385 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.711667 B = 8269.275897 C = 8481.554521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C -0.142 4.142 4 C 0.523 3.477 5 O -0.534 6.534 6 N -0.709 5.709 7 C 0.162 3.838 8 H 0.091 0.909 9 C -0.136 4.136 10 C 0.148 3.852 11 N -0.583 5.583 12 C -0.243 4.243 13 H 0.066 0.934 14 C -0.001 4.001 15 N -0.907 5.907 16 Si 0.903 3.097 17 H -0.278 1.278 18 H -0.291 1.291 19 H -0.290 1.290 20 C 0.146 3.854 21 C 0.073 3.927 22 H 0.043 0.957 23 O -0.560 6.560 24 C 0.287 3.713 25 F -0.192 7.192 26 F -0.204 7.204 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.402 0.598 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.020 0.980 37 H 0.058 0.942 38 H 0.253 0.747 39 H 0.027 0.973 40 H 0.096 0.904 41 H 0.375 0.625 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.866 7.690 -16.822 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.140 4.140 3 C -0.200 4.200 4 C 0.307 3.693 5 O -0.411 6.411 6 N -0.359 5.359 7 C 0.059 3.941 8 H 0.109 0.891 9 C -0.177 4.177 10 C 0.021 3.979 11 N -0.305 5.305 12 C -0.372 4.372 13 H 0.084 0.916 14 C -0.198 4.198 15 N -0.552 5.552 16 Si 0.733 3.267 17 H -0.203 1.203 18 H -0.218 1.218 19 H -0.216 1.216 20 C 0.018 3.982 21 C 0.012 3.988 22 H 0.061 0.939 23 O -0.366 6.366 24 C 0.232 3.768 25 F -0.173 7.173 26 F -0.185 7.185 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.237 0.763 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.038 0.962 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.045 0.955 40 H 0.114 0.886 41 H 0.222 0.778 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.441 6.603 -17.257 18.637 hybrid contribution -0.573 0.818 1.310 1.647 sum -3.015 7.420 -15.947 17.845 Atomic orbital electron populations 1.21858 0.90541 1.03993 1.03838 1.21893 1.00014 0.98398 0.93693 1.21854 1.02090 0.91864 1.04186 1.19888 0.80579 0.84409 0.84399 1.90758 1.38054 1.25716 1.86589 1.46123 1.52825 1.31802 1.05159 1.21068 0.98768 0.92662 0.81632 0.89083 1.22313 0.99900 0.96576 0.98863 1.20897 0.97629 0.91783 0.87591 1.43880 1.59057 1.18879 1.08657 1.19230 1.03075 1.31980 0.82958 0.91611 1.25025 0.95108 1.02193 0.97517 1.70024 1.10013 1.46781 1.28411 0.86213 0.79657 0.77379 0.83488 1.20257 1.21788 1.21633 1.21429 0.92669 0.89980 0.94076 1.22841 0.84539 0.94741 0.96671 0.93896 1.86342 1.28965 1.65205 1.56044 1.21459 0.98204 0.75185 0.81915 1.93007 1.90820 1.36897 1.96566 1.92958 1.91252 1.81090 1.53230 0.90693 0.90650 0.91101 0.91301 0.90405 0.90554 0.76298 0.92830 0.91175 0.96213 0.92389 0.93690 0.95454 0.88616 0.77762 0.86792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.13 37.16 0.30 -1.05 16 2 C -0.14 -1.40 0.58 -155.66 -0.09 -1.49 16 3 C -0.14 -1.08 8.25 37.16 0.31 -0.77 16 4 C 0.52 7.28 6.33 -10.99 -0.07 7.21 16 5 O -0.53 -9.45 15.07 5.56 0.08 -9.37 16 6 N -0.71 -9.71 4.84 -53.74 -0.26 -9.97 16 7 C 0.16 2.75 2.20 -67.86 -0.15 2.60 16 8 H 0.09 1.69 7.58 -51.93 -0.39 1.29 16 9 C -0.14 -2.53 5.52 -26.58 -0.15 -2.68 16 10 C 0.15 3.16 6.52 -3.71 -0.02 3.14 16 11 N -0.58 -14.06 2.93 -172.32 -0.51 -14.56 16 12 C -0.24 -6.46 9.58 -15.06 -0.14 -6.61 16 13 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 14 C 0.00 -0.02 4.92 -17.43 -0.09 -0.10 16 15 N -0.91 -25.27 11.19 55.49 0.62 -24.64 16 16 Si 0.90 21.07 29.59 -169.99 -5.03 16.04 16 17 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 C 0.15 3.21 4.94 -3.71 -0.02 3.19 16 21 C 0.07 1.26 3.38 -26.61 -0.09 1.17 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 23 O -0.56 -9.34 12.09 -35.23 -0.43 -9.76 16 24 C 0.29 3.19 3.79 37.16 0.14 3.33 16 25 F -0.19 -2.71 15.90 2.25 0.04 -2.68 16 26 F -0.20 -2.17 16.30 2.25 0.04 -2.13 16 27 H 0.07 0.62 7.56 -51.93 -0.39 0.23 16 28 H 0.07 0.61 7.80 -51.93 -0.41 0.20 16 29 H 0.07 0.77 7.80 -51.93 -0.41 0.36 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.50 7.80 -51.93 -0.41 0.09 16 32 H 0.08 0.52 7.56 -51.93 -0.39 0.12 16 33 H 0.40 4.74 7.09 -40.82 -0.29 4.45 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.36 7.61 -51.93 -0.40 0.97 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 1.23 7.93 -51.93 -0.41 0.81 16 38 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 2.32 6.06 -51.93 -0.31 2.00 16 41 H 0.38 5.42 9.08 45.56 0.41 5.84 16 42 H 0.11 1.12 8.10 -51.93 -0.42 0.70 16 LS Contribution 342.26 15.07 5.16 5.16 Total: -1.00 -30.96 342.26 -5.83 -36.79 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -5.48 Total: 7.19 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -0.07 Total: 7.94 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: -0.14 Total: -49.18 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.34 Total: -19.13 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.07 Total: -4.81 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.96 -5.83 -36.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099998362.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.744 kcal (2) G-P(sol) polarization free energy of solvation -30.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds