Wall clock time and date at job start Tue Mar 31 2020 09:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46996 * 2 1 4 4 C 1.50699 * 109.47307 * 120.00174 * 2 1 3 5 5 O 1.21279 * 120.00103 * 119.99579 * 4 2 1 6 6 N 1.34776 * 119.99957 * 300.00559 * 4 2 1 7 7 C 1.46498 * 119.99997 * 179.97438 * 6 4 2 8 8 H 1.08998 * 109.44731 * 35.02909 * 7 6 4 9 9 C 1.53102 * 109.50552 * 275.05087 * 7 6 4 10 10 C 1.53195 * 109.33086 * 178.63137 * 9 7 6 11 11 N 1.46924 * 108.77703 * 54.63546 * 10 9 7 12 12 C 1.36937 * 120.63313 * 126.36931 * 11 10 9 13 13 H 1.07999 * 119.99945 * 331.86263 * 12 11 10 14 14 C 1.38809 * 119.99917 * 151.86260 * 12 11 10 15 15 N 1.31621 * 120.00237 * 343.06122 * 14 12 11 16 16 Si 1.86801 * 119.99944 * 163.06019 * 14 12 11 17 17 H 1.48493 * 109.47156 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46885 * 119.99698 * 16 14 12 19 19 H 1.48501 * 109.47330 * 239.99853 * 16 14 12 20 20 C 1.46934 * 118.73772 * 306.39118 * 11 10 9 21 21 C 1.53037 * 109.46173 * 154.99497 * 7 6 4 22 22 H 1.09006 * 109.50051 * 301.37049 * 21 7 6 23 23 O 1.42905 * 109.49713 * 61.43358 * 21 7 6 24 24 C 1.53000 * 109.47169 * 240.00270 * 2 1 3 25 25 F 1.39905 * 109.47126 * 299.99827 * 24 2 1 26 26 F 1.39903 * 109.47034 * 59.99930 * 24 2 1 27 27 H 1.09002 * 109.47619 * 299.99722 * 1 2 3 28 28 H 1.09000 * 109.47108 * 59.99881 * 1 2 3 29 29 H 1.09002 * 109.47206 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47066 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47289 * 300.00009 * 3 2 1 32 32 H 1.08997 * 109.46679 * 60.00203 * 3 2 1 33 33 H 0.97002 * 119.99913 * 359.97438 * 6 4 2 34 34 H 1.08994 * 109.49303 * 58.67243 * 9 7 6 35 35 H 1.09001 * 109.51208 * 298.60190 * 9 7 6 36 36 H 1.08998 * 109.58377 * 294.84434 * 10 9 7 37 37 H 1.08998 * 109.58574 * 174.41962 * 10 9 7 38 38 H 0.97000 * 120.00221 * 180.02562 * 15 14 12 39 39 H 1.09007 * 109.58433 * 293.82387 * 20 11 10 40 40 H 1.08997 * 109.70448 * 173.46953 * 20 11 10 41 41 H 0.96699 * 113.99707 * 179.97438 * 23 21 7 42 42 H 1.08997 * 109.47314 * 180.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7295 -1.6965 1.1191 6 7 1.7067 -0.2501 2.4545 7 6 2.1946 -0.9410 3.6507 8 1 3.1939 -1.3328 3.4612 9 6 1.2507 -2.0964 3.9943 10 6 1.7830 -2.8371 5.2252 11 7 1.9730 -1.8692 6.3141 12 6 1.3994 -2.0767 7.5401 13 1 0.4848 -2.6456 7.6191 14 6 1.9936 -1.5559 8.6814 15 7 3.2487 -1.1610 8.6483 16 14 1.0118 -1.4155 10.2644 17 1 -0.3649 -1.9246 10.0398 18 1 1.6687 -2.2184 11.3271 19 1 0.9515 0.0074 10.6850 20 6 2.7897 -0.6740 6.0624 21 6 2.2462 0.0423 4.8221 22 1 2.9000 0.8768 4.5682 23 8 0.9311 0.5319 5.0922 24 6 2.0400 -0.7212 -1.2493 25 9 1.5737 -2.0402 -1.2493 26 9 1.5736 -0.0616 -2.3915 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9562 0.8900 33 1 1.1492 0.5388 2.5436 34 1 1.1962 -2.7847 3.1510 35 1 0.2567 -1.7033 4.2079 36 1 2.7360 -3.3080 4.9844 37 1 1.0649 -3.5971 5.5331 38 1 3.6640 -0.7974 9.4459 39 1 3.8250 -0.9686 5.8899 40 1 2.7384 -0.0060 6.9222 41 1 0.8886 1.1614 5.8250 42 1 3.1299 -0.7216 -1.2491 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099998362.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:57 Heat of formation + Delta-G solvation = -197.850225 kcal Electronic energy + Delta-G solvation = -27003.499228 eV Core-core repulsion = 22846.570778 eV Total energy + Delta-G solvation = -4156.928450 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.154 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.99339 -47.95319 -41.40447 -39.62597 -36.49981 -36.35253 -35.74455 -33.80618 -31.13407 -30.67655 -28.46415 -27.33123 -27.08469 -24.65188 -23.81807 -22.97079 -21.18978 -20.54884 -19.23832 -18.79914 -18.25637 -17.98083 -17.29571 -17.15045 -16.99944 -16.44590 -16.09276 -15.69504 -15.41802 -15.32899 -15.06569 -14.81717 -14.50771 -14.31380 -14.28211 -13.86274 -13.71072 -13.64090 -13.35881 -13.15952 -13.13264 -13.09875 -12.79041 -12.65227 -12.35847 -12.33722 -12.24106 -12.00640 -11.82342 -11.68004 -11.45367 -10.87804 -10.70944 -10.59320 -10.06177 -8.67357 -7.87816 -5.32080 1.47075 1.48642 1.50859 1.60800 1.92521 2.51978 2.68379 3.16612 3.24559 3.36331 3.40763 3.46172 3.65820 3.82614 3.89071 4.01198 4.09516 4.17374 4.34244 4.39980 4.59740 4.62620 4.67690 4.73557 4.73867 4.77594 4.87231 4.94143 5.06168 5.12593 5.18002 5.18696 5.42010 5.45672 5.56535 5.65844 6.37249 6.47850 6.92500 7.13574 7.15517 7.82590 8.35549 9.18671 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.034873 B = 0.003385 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.711667 B = 8269.275897 C = 8481.554521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C -0.140 4.140 4 C 0.523 3.477 5 O -0.574 6.574 6 N -0.697 5.697 7 C 0.169 3.831 8 H 0.075 0.925 9 C -0.120 4.120 10 C 0.144 3.856 11 N -0.597 5.597 12 C -0.255 4.255 13 H 0.060 0.940 14 C -0.045 4.045 15 N -0.935 5.935 16 Si 0.966 3.034 17 H -0.272 1.272 18 H -0.297 1.297 19 H -0.285 1.285 20 C 0.149 3.851 21 C 0.092 3.908 22 H 0.073 0.927 23 O -0.561 6.561 24 C 0.280 3.720 25 F -0.213 7.213 26 F -0.199 7.199 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.415 0.585 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.011 0.989 37 H 0.054 0.946 38 H 0.251 0.749 39 H 0.004 0.996 40 H 0.073 0.927 41 H 0.387 0.613 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.983 9.598 -17.788 20.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 C -0.197 4.197 4 C 0.309 3.691 5 O -0.454 6.454 6 N -0.348 5.348 7 C 0.064 3.936 8 H 0.093 0.907 9 C -0.160 4.160 10 C 0.018 3.982 11 N -0.320 5.320 12 C -0.385 4.385 13 H 0.078 0.922 14 C -0.240 4.240 15 N -0.581 5.581 16 Si 0.795 3.205 17 H -0.196 1.196 18 H -0.224 1.224 19 H -0.211 1.211 20 C 0.023 3.977 21 C 0.031 3.969 22 H 0.091 0.909 23 O -0.368 6.368 24 C 0.226 3.774 25 F -0.194 7.194 26 F -0.180 7.180 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.253 0.747 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.028 0.972 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.022 0.978 40 H 0.091 0.909 41 H 0.236 0.764 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.589 8.546 -18.249 20.468 hybrid contribution -0.205 0.166 1.579 1.600 sum -3.794 8.712 -16.670 19.188 Atomic orbital electron populations 1.21899 0.89579 1.03274 1.05421 1.21857 1.00621 0.99448 0.91055 1.21922 1.02376 0.89698 1.05752 1.20503 0.79579 0.83846 0.85196 1.90747 1.39854 1.27613 1.87169 1.45858 1.52818 1.31905 1.04178 1.20730 0.97641 0.92282 0.82944 0.90657 1.22076 0.99708 0.96929 0.97274 1.20962 0.97206 0.91810 0.88214 1.44094 1.59147 1.20197 1.08607 1.19451 1.02968 1.31844 0.84245 0.92185 1.25680 0.95857 1.02274 1.00172 1.70163 1.11286 1.47692 1.28965 0.85230 0.78416 0.77215 0.79650 1.19632 1.22435 1.21099 1.21335 0.91571 0.89288 0.95552 1.22490 0.85157 0.95010 0.94214 0.90937 1.86315 1.28295 1.65544 1.56618 1.21703 0.98924 0.74320 0.82440 1.92967 1.91087 1.38633 1.96701 1.92964 1.91275 1.80820 1.52981 0.89316 0.88910 0.92972 0.90995 0.88657 0.89207 0.74702 0.92709 0.91598 0.97154 0.92767 0.93996 0.97830 0.90866 0.76409 0.85667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.13 71.98 0.58 -1.74 16 2 C -0.13 -2.30 0.58 -52.93 -0.03 -2.33 16 3 C -0.14 -1.62 8.25 71.98 0.59 -1.03 16 4 C 0.52 13.70 6.33 87.66 0.55 14.25 16 5 O -0.57 -20.02 15.07 -3.03 -0.05 -20.07 16 6 N -0.70 -17.58 4.84 -442.32 -2.14 -19.72 16 7 C 0.17 5.54 2.20 45.04 0.10 5.64 16 8 H 0.08 2.77 7.58 -2.39 -0.02 2.75 16 9 C -0.12 -4.39 5.52 30.69 0.17 -4.22 16 10 C 0.14 6.26 6.52 86.36 0.56 6.83 16 11 N -0.60 -29.18 2.93 -699.08 -2.05 -31.23 16 12 C -0.25 -13.68 9.58 84.03 0.81 -12.88 16 13 H 0.06 3.23 7.88 -2.91 -0.02 3.21 16 14 C -0.04 -2.39 4.92 84.86 0.42 -1.97 16 15 N -0.93 -52.77 11.19 21.65 0.24 -52.53 16 16 Si 0.97 43.41 29.59 68.60 2.03 45.44 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 20 C 0.15 6.63 4.94 86.36 0.43 7.06 16 21 C 0.09 3.05 3.38 30.67 0.10 3.15 16 22 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 23 O -0.56 -17.41 12.09 -148.98 -1.80 -19.21 16 24 C 0.28 5.78 3.79 71.98 0.27 6.05 16 25 F -0.21 -5.90 15.90 44.97 0.72 -5.19 16 26 F -0.20 -3.79 16.30 44.97 0.73 -3.05 16 27 H 0.09 1.18 7.56 -2.39 -0.02 1.16 16 28 H 0.09 1.19 7.80 -2.39 -0.02 1.17 16 29 H 0.05 1.05 7.80 -2.39 -0.02 1.03 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 0.83 7.80 -2.39 -0.02 0.81 16 32 H 0.09 0.83 7.56 -2.39 -0.02 0.81 16 33 H 0.42 8.41 7.09 -92.71 -0.66 7.75 16 34 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.07 2.48 7.61 -2.39 -0.02 2.46 16 36 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.05 2.33 7.93 -2.39 -0.02 2.31 16 38 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 39 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 40 H 0.07 3.59 6.06 -2.39 -0.01 3.57 16 41 H 0.39 10.29 9.08 -74.06 -0.67 9.62 16 42 H 0.13 2.28 8.10 -2.39 -0.02 2.26 16 Total: -1.00 -67.20 342.26 1.96 -65.24 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -0.28 Total: 21.49 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: 4.56 Total: 18.83 kcal Atomic # 7 Polarization: -99.54 SS G_CDS: -3.95 Total: -103.49 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -1.85 Total: -39.28 kcal Atomic # 9 Polarization: -9.69 SS G_CDS: 1.45 Total: -8.24 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -67.20 1.96 -65.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099998362.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.612 kcal (2) G-P(sol) polarization free energy of solvation -67.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds