Wall clock time and date at job start Tue Mar 31 2020 09:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47592 * 2 1 4 4 C 1.50705 * 109.47210 * 120.00418 * 2 1 3 5 5 O 1.21279 * 120.00149 * 119.99584 * 4 2 1 6 6 N 1.34782 * 119.99262 * 299.99859 * 4 2 1 7 7 C 1.46500 * 119.99294 * 179.97438 * 6 4 2 8 8 H 1.09001 * 109.46138 * 325.02693 * 7 6 4 9 9 C 1.53037 * 109.46013 * 85.00247 * 7 6 4 10 10 C 1.53194 * 109.31665 * 181.38272 * 9 7 6 11 11 N 1.46927 * 108.77332 * 305.36499 * 10 9 7 12 12 C 1.36933 * 120.62742 * 233.32862 * 11 10 9 13 13 H 1.08008 * 119.99663 * 151.88130 * 12 11 10 14 14 C 1.38805 * 120.00459 * 331.88447 * 12 11 10 15 15 N 1.31622 * 119.99962 * 343.12018 * 14 12 11 16 16 Si 1.86795 * 120.00332 * 163.12475 * 14 12 11 17 17 H 1.48496 * 109.47227 * 59.99553 * 16 14 12 18 18 H 1.48505 * 109.47370 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47123 * 299.99866 * 16 14 12 20 20 C 1.46927 * 118.73757 * 53.60733 * 11 10 9 21 21 C 1.53042 * 109.45824 * 205.06535 * 7 6 4 22 22 H 1.09000 * 109.49938 * 298.56874 * 21 7 6 23 23 O 1.42901 * 109.49709 * 58.63683 * 21 7 6 24 24 C 1.53003 * 109.47220 * 240.00100 * 2 1 3 25 25 F 1.39907 * 109.46934 * 300.00512 * 24 2 1 26 26 F 1.39900 * 109.47156 * 60.00227 * 24 2 1 27 27 H 1.08993 * 109.46851 * 300.00162 * 1 2 3 28 28 H 1.09004 * 109.46571 * 59.99985 * 1 2 3 29 29 H 1.08993 * 109.47459 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47854 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47289 * 300.00172 * 3 2 1 32 32 H 1.09003 * 109.47046 * 59.99909 * 3 2 1 33 33 H 0.96994 * 120.00137 * 359.97438 * 6 4 2 34 34 H 1.08998 * 109.49912 * 61.42728 * 9 7 6 35 35 H 1.09003 * 109.49884 * 301.33444 * 9 7 6 36 36 H 1.08994 * 109.58638 * 185.57412 * 10 9 7 37 37 H 1.08999 * 109.69948 * 65.22024 * 10 9 7 38 38 H 0.96995 * 120.00418 * 180.02562 * 15 14 12 39 39 H 1.08999 * 109.59069 * 66.17922 * 20 11 10 40 40 H 1.08998 * 109.58537 * 186.60221 * 20 11 10 41 41 H 0.96698 * 114.00425 * 179.97438 * 23 21 7 42 42 H 1.08997 * 109.47615 * 180.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1191 6 7 1.7067 -0.2500 2.4546 7 6 2.1946 -0.9410 3.6507 8 1 2.2313 -2.0137 3.4608 9 6 3.5977 -0.4359 3.9947 10 6 4.1185 -1.1851 5.2252 11 7 3.1421 -1.0426 6.3139 12 6 3.5296 -0.5774 7.5421 13 1 2.8227 -0.0540 8.1689 14 6 4.8309 -0.7782 7.9814 15 7 5.5912 -1.6796 7.3968 16 14 5.5031 0.2307 9.4025 17 1 4.6754 -0.0057 10.6125 18 1 6.9058 -0.1730 9.6763 19 1 5.4625 1.6724 9.0489 20 6 1.7433 -1.4146 6.0614 21 6 1.2492 -0.6627 4.8215 22 1 1.2311 0.4074 5.0281 23 8 -0.0674 -1.1063 4.4872 24 6 2.0401 -0.7212 -1.2493 25 9 1.5736 -2.0403 -1.2493 26 9 1.5738 -0.0617 -2.3916 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 1.1494 0.5389 2.5435 34 1 3.5575 0.6321 4.2090 35 1 4.2651 -0.6132 3.1513 36 1 5.0741 -0.7614 5.5336 37 1 4.2471 -2.2406 4.9856 38 1 6.5004 -1.8203 7.7040 39 1 1.6763 -2.4886 5.8883 40 1 1.1318 -1.1422 6.9217 41 1 -0.7205 -0.9612 5.1854 42 1 3.1300 -0.7217 -1.2491 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099998364.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:03 Heat of formation + Delta-G solvation = -176.845823 kcal Electronic energy + Delta-G solvation = -26883.530996 eV Core-core repulsion = 22727.513365 eV Total energy + Delta-G solvation = -4156.017631 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.154 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.05437 -46.98997 -40.18286 -38.17405 -35.49491 -35.35500 -34.38289 -31.90872 -29.99749 -28.58618 -27.76805 -26.48613 -25.36231 -23.21893 -22.32563 -21.53817 -19.92430 -19.32566 -18.00371 -17.33414 -17.16272 -16.95480 -16.47424 -16.08114 -15.53417 -14.91807 -14.83581 -14.43569 -13.98636 -13.85036 -13.71536 -13.46273 -13.34988 -13.29449 -13.01165 -12.77600 -12.51049 -12.46805 -12.33271 -12.30088 -12.08363 -11.62109 -11.54421 -11.15615 -10.89574 -10.83394 -10.72908 -10.39177 -10.32178 -9.99097 -9.86609 -9.75973 -9.45522 -8.83377 -8.50122 -6.81133 -5.88656 -3.33689 2.64622 3.03891 3.32357 3.38696 3.39288 3.57122 4.06398 4.26517 4.27352 4.35225 4.48194 4.73746 4.90297 5.03957 5.22698 5.23888 5.28553 5.36680 5.40653 5.42733 5.47188 5.49414 5.71734 5.75607 5.86059 5.91004 6.05186 6.23738 6.43228 6.45809 6.60394 6.72482 6.77502 7.23670 7.54887 7.59704 7.68801 7.86527 8.27350 8.33895 9.09170 9.71329 10.27367 11.19867 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.026359 B = 0.003487 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.984195 B = 8027.290799 C = 8360.329576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C -0.142 4.142 4 C 0.526 3.474 5 O -0.532 6.532 6 N -0.707 5.707 7 C 0.162 3.838 8 H 0.089 0.911 9 C -0.146 4.146 10 C 0.171 3.829 11 N -0.588 5.588 12 C -0.262 4.262 13 H 0.067 0.933 14 C 0.007 3.993 15 N -0.899 5.899 16 Si 0.905 3.095 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.283 1.283 20 C 0.121 3.879 21 C 0.080 3.920 22 H 0.056 0.944 23 O -0.571 6.571 24 C 0.286 3.714 25 F -0.192 7.192 26 F -0.204 7.204 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.396 0.604 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.024 0.976 38 H 0.257 0.743 39 H 0.029 0.971 40 H 0.060 0.940 41 H 0.374 0.626 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.708 7.221 -13.924 18.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.140 4.140 3 C -0.200 4.200 4 C 0.310 3.690 5 O -0.408 6.408 6 N -0.356 5.356 7 C 0.059 3.941 8 H 0.107 0.893 9 C -0.186 4.186 10 C 0.045 3.955 11 N -0.312 5.312 12 C -0.392 4.392 13 H 0.084 0.916 14 C -0.193 4.193 15 N -0.542 5.542 16 Si 0.734 3.266 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.209 1.209 20 C -0.007 4.007 21 C 0.019 3.981 22 H 0.074 0.926 23 O -0.375 6.375 24 C 0.232 3.768 25 F -0.173 7.173 26 F -0.186 7.186 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.230 0.770 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.042 0.958 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.079 0.921 41 H 0.221 0.779 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.745 6.253 -14.516 18.064 hybrid contribution -0.225 0.951 1.264 1.598 sum -8.970 7.205 -13.252 17.549 Atomic orbital electron populations 1.21838 0.90580 1.03963 1.03664 1.21890 0.99960 0.98397 0.93721 1.21850 1.02241 0.91822 1.04066 1.19819 0.80580 0.84342 0.84273 1.90768 1.37799 1.25731 1.86504 1.45988 1.52739 1.31552 1.05355 1.21058 0.93190 0.98156 0.81735 0.89299 1.22601 0.94190 1.01104 1.00720 1.20823 0.94231 0.96617 0.83818 1.44039 1.02265 1.75332 1.09517 1.19115 0.96304 1.29512 0.94248 0.91578 1.25083 0.98582 0.97327 0.98264 1.70019 1.08908 1.31923 1.43363 0.86341 0.78061 0.80078 0.82080 1.20808 1.21520 1.20932 1.21528 0.88543 0.96546 0.94097 1.22768 0.81659 0.97945 0.95681 0.92604 1.86482 1.19197 1.86544 1.45309 1.21467 0.98269 0.75169 0.81890 1.93006 1.90815 1.36918 1.96567 1.92954 1.91260 1.81097 1.53245 0.90797 0.90747 0.91112 0.91193 0.90439 0.90644 0.76981 0.92299 0.91936 0.88903 0.95751 0.93331 0.95305 0.92134 0.77949 0.86733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.13 37.16 0.30 -1.05 16 2 C -0.14 -1.46 0.58 -155.66 -0.09 -1.55 16 3 C -0.14 -1.14 8.25 37.15 0.31 -0.84 16 4 C 0.53 7.67 6.33 -10.98 -0.07 7.60 16 5 O -0.53 -9.95 15.07 5.56 0.08 -9.87 16 6 N -0.71 -9.86 4.70 -53.76 -0.25 -10.11 16 7 C 0.16 2.80 2.12 -67.89 -0.14 2.66 16 8 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 9 C -0.15 -2.75 5.65 -26.61 -0.15 -2.90 16 10 C 0.17 4.00 5.29 -3.71 -0.02 3.98 16 11 N -0.59 -14.06 2.99 -172.32 -0.52 -14.58 16 12 C -0.26 -6.89 9.58 -15.06 -0.14 -7.03 16 13 H 0.07 1.68 7.89 -52.48 -0.41 1.27 16 14 C 0.01 0.19 4.92 -17.43 -0.09 0.10 16 15 N -0.90 -25.46 11.20 55.49 0.62 -24.84 16 16 Si 0.91 20.93 29.59 -169.99 -5.03 15.90 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 20 C 0.12 2.39 6.14 -3.71 -0.02 2.37 16 21 C 0.08 1.31 3.14 -26.61 -0.08 1.23 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 23 O -0.57 -8.15 13.16 -35.23 -0.46 -8.61 16 24 C 0.29 3.34 3.79 37.16 0.14 3.48 16 25 F -0.19 -2.82 15.90 2.25 0.04 -2.78 16 26 F -0.20 -2.25 16.30 2.25 0.04 -2.21 16 27 H 0.07 0.60 7.56 -51.93 -0.39 0.21 16 28 H 0.07 0.60 7.80 -51.93 -0.41 0.20 16 29 H 0.07 0.78 7.80 -51.93 -0.41 0.38 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.52 7.80 -51.93 -0.41 0.12 16 32 H 0.07 0.53 7.56 -51.93 -0.39 0.14 16 33 H 0.40 4.47 7.44 -40.82 -0.30 4.17 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 37 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 1.13 7.93 -51.93 -0.41 0.71 16 41 H 0.37 3.78 9.08 45.56 0.41 4.19 16 42 H 0.12 1.21 8.10 -51.93 -0.42 0.79 16 LS Contribution 343.93 15.07 5.18 5.18 Total: -1.00 -31.68 343.93 -5.88 -37.56 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.52 Total: 6.31 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -0.06 Total: 8.05 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -0.15 Total: -49.53 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.38 Total: -18.48 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 0.07 Total: -4.99 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.68 -5.88 -37.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099998364.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.282 kcal (2) G-P(sol) polarization free energy of solvation -31.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds