Wall clock time and date at job start Tue Mar 31 2020 09:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47262 * 2 1 4 4 C 1.50705 * 109.46739 * 240.00006 * 2 1 3 5 5 O 1.21282 * 119.99673 * 239.99896 * 4 2 1 6 6 N 1.34774 * 120.00152 * 60.00578 * 4 2 1 7 7 C 1.46497 * 120.00144 * 179.97438 * 6 4 2 8 8 H 1.09003 * 109.45991 * 34.97114 * 7 6 4 9 9 C 1.53041 * 109.45747 * 274.99776 * 7 6 4 10 10 C 1.53195 * 109.30905 * 178.61168 * 9 7 6 11 11 N 1.46928 * 108.77529 * 54.64041 * 10 9 7 12 12 C 1.36933 * 120.63197 * 126.41357 * 11 10 9 13 13 H 1.08007 * 119.99463 * 207.67050 * 12 11 10 14 14 C 1.38807 * 120.00581 * 27.66285 * 12 11 10 15 15 N 1.31628 * 119.99542 * 17.37286 * 14 12 11 16 16 Si 1.86798 * 120.00634 * 197.37006 * 14 12 11 17 17 H 1.48505 * 109.46666 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47471 * 120.00018 * 16 14 12 19 19 H 1.48495 * 109.47276 * 240.00443 * 16 14 12 20 20 C 1.46933 * 118.73502 * 306.38517 * 11 10 9 21 21 C 1.53037 * 109.45994 * 154.93037 * 7 6 4 22 22 H 1.09002 * 109.50036 * 61.43492 * 21 7 6 23 23 O 1.42898 * 109.49841 * 301.33321 * 21 7 6 24 24 C 1.53002 * 109.46740 * 120.00348 * 2 1 3 25 25 F 1.39898 * 109.47084 * 299.99672 * 24 2 1 26 26 F 1.39900 * 109.47399 * 59.99846 * 24 2 1 27 27 H 1.08999 * 109.47249 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46642 * 59.99643 * 1 2 3 29 29 H 1.08996 * 109.47127 * 300.00109 * 1 2 3 30 30 H 1.09000 * 109.46953 * 60.00384 * 3 2 1 31 31 H 1.09001 * 109.46593 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.47124 * 299.99745 * 3 2 1 33 33 H 0.97002 * 119.99889 * 359.97438 * 6 4 2 34 34 H 1.08998 * 109.50294 * 298.56485 * 9 7 6 35 35 H 1.09002 * 109.50107 * 58.66381 * 9 7 6 36 36 H 1.09001 * 109.58431 * 174.42070 * 10 9 7 37 37 H 1.09001 * 109.58959 * 294.70421 * 10 9 7 38 38 H 0.97003 * 119.99470 * 180.02562 * 15 14 12 39 39 H 1.08994 * 109.58095 * 173.39865 * 20 11 10 40 40 H 1.09003 * 109.58427 * 293.68243 * 20 11 10 41 41 H 0.96700 * 114.00011 * 179.97438 * 23 21 7 42 42 H 1.09001 * 109.46650 * 179.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6965 -1.1192 6 7 1.7068 -0.2499 -2.4546 7 6 2.1955 -0.9402 -3.6508 8 1 2.2328 -2.0130 -3.4612 9 6 3.5983 -0.4339 -3.9942 10 6 4.1199 -1.1826 -5.2247 11 7 3.1438 -1.0404 -6.3137 12 6 3.5303 -0.5698 -7.5401 13 1 2.8197 -0.0537 -8.1688 14 6 4.8352 -0.7558 -7.9753 15 7 5.6003 -1.6562 -7.3952 16 14 5.5055 0.2714 -9.3841 17 1 4.4535 1.2054 -9.8599 18 1 6.6809 1.0482 -8.9149 19 1 5.9150 -0.6222 -10.4972 20 6 1.7451 -1.4135 -6.0618 21 6 1.2502 -0.6623 -4.8218 22 1 1.2313 0.4078 -5.0281 23 8 -0.0661 -1.1077 -4.4882 24 6 2.0400 -0.7214 1.2492 25 9 1.5736 -0.0619 2.3915 26 9 1.5736 -2.0403 1.2492 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8899 30 1 1.6768 1.9563 0.8900 31 1 3.1301 1.4423 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.1489 0.5386 -2.5436 34 1 3.5574 0.6340 -4.2083 35 1 4.2656 -0.6110 -3.1507 36 1 5.0754 -0.7581 -5.5329 37 1 4.2497 -2.2375 -4.9829 38 1 6.5123 -1.7859 -7.6991 39 1 1.1338 -1.1414 -6.9221 40 1 1.6786 -2.4881 -5.8914 41 1 -0.7192 -0.9622 -5.1864 42 1 3.1300 -0.7217 1.2490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099998365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:06 Heat of formation + Delta-G solvation = -176.785734 kcal Electronic energy + Delta-G solvation = -26885.126915 eV Core-core repulsion = 22729.111890 eV Total energy + Delta-G solvation = -4156.015025 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.154 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.05591 -46.99151 -40.18430 -38.17692 -35.49779 -35.35647 -34.38552 -31.90959 -30.00308 -28.58649 -27.76861 -26.48700 -25.36727 -23.22197 -22.32896 -21.54096 -19.92595 -19.32813 -18.00497 -17.33529 -17.16617 -16.95684 -16.47759 -16.08253 -15.53784 -14.91939 -14.84094 -14.43620 -13.98370 -13.84869 -13.71596 -13.46430 -13.35090 -13.30419 -13.01208 -12.77579 -12.51100 -12.46968 -12.33425 -12.30206 -12.08661 -11.62867 -11.54441 -11.15954 -10.92841 -10.83400 -10.72358 -10.37362 -10.29874 -9.99667 -9.86085 -9.76286 -9.45524 -8.83808 -8.50731 -6.82225 -5.89144 -3.33360 2.64523 3.03737 3.31069 3.38990 3.40865 3.57048 4.06323 4.26328 4.27258 4.34979 4.47987 4.73630 4.90230 5.03919 5.22510 5.23818 5.27986 5.36598 5.40482 5.42480 5.47100 5.49222 5.71398 5.75506 5.85939 5.90694 6.04950 6.23579 6.42783 6.45510 6.60177 6.72125 6.77329 7.23319 7.54779 7.59550 7.69071 7.86298 8.27223 8.33105 9.08723 9.71122 10.26759 11.19420 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.026266 B = 0.003492 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.774217 B = 8017.091285 C = 8349.777102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C -0.142 4.142 4 C 0.526 3.474 5 O -0.532 6.532 6 N -0.707 5.707 7 C 0.162 3.838 8 H 0.089 0.911 9 C -0.146 4.146 10 C 0.171 3.829 11 N -0.588 5.588 12 C -0.260 4.260 13 H 0.068 0.932 14 C 0.006 3.994 15 N -0.898 5.898 16 Si 0.904 3.096 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.289 1.289 20 C 0.120 3.880 21 C 0.081 3.919 22 H 0.056 0.944 23 O -0.571 6.571 24 C 0.286 3.714 25 F -0.204 7.204 26 F -0.192 7.192 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.396 0.604 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.024 0.976 38 H 0.255 0.745 39 H 0.060 0.940 40 H 0.029 0.971 41 H 0.374 0.626 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.786 7.206 13.942 18.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.140 4.140 3 C -0.200 4.200 4 C 0.310 3.690 5 O -0.408 6.408 6 N -0.356 5.356 7 C 0.059 3.941 8 H 0.107 0.893 9 C -0.186 4.186 10 C 0.044 3.956 11 N -0.312 5.312 12 C -0.390 4.390 13 H 0.085 0.915 14 C -0.194 4.194 15 N -0.542 5.542 16 Si 0.733 3.267 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.216 1.216 20 C -0.007 4.007 21 C 0.020 3.980 22 H 0.074 0.926 23 O -0.375 6.375 24 C 0.232 3.768 25 F -0.186 7.186 26 F -0.173 7.173 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.230 0.770 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.042 0.958 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.047 0.953 41 H 0.221 0.779 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.835 6.247 14.532 18.118 hybrid contribution -0.205 0.951 -1.246 1.581 sum -9.040 7.199 13.286 17.609 Atomic orbital electron populations 1.21840 0.90581 1.03962 1.03666 1.21892 0.99961 0.98398 0.93721 1.21850 1.02240 0.91819 1.04066 1.19818 0.80582 0.84341 0.84273 1.90769 1.37802 1.25730 1.86507 1.45986 1.52696 1.31594 1.05354 1.21059 0.93183 0.98169 0.81732 0.89298 1.22604 0.94190 1.01103 1.00729 1.20831 0.94286 0.96629 0.83806 1.44053 1.02306 1.75190 1.09638 1.19201 0.95925 1.29537 0.94300 0.91464 1.25070 0.98524 0.97458 0.98314 1.70052 1.08462 1.32118 1.43557 0.86211 0.78872 0.79853 0.81730 1.20218 1.21446 1.21609 1.21529 0.88511 0.96568 0.94118 1.22765 0.81671 0.97935 0.95672 0.92588 1.86482 1.19227 1.86453 1.45366 1.21465 0.98269 0.75170 0.81889 1.92954 1.91258 1.81099 1.53245 1.93004 1.90817 1.36917 1.96565 0.91112 0.90802 0.90740 0.90442 0.91196 0.90637 0.76981 0.92298 0.91935 0.88821 0.95771 0.93454 0.92143 0.95276 0.77946 0.86735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.13 37.16 0.30 -1.05 16 2 C -0.14 -1.46 0.58 -155.65 -0.09 -1.55 16 3 C -0.14 -1.14 8.25 37.16 0.31 -0.83 16 4 C 0.53 7.67 6.33 -10.98 -0.07 7.60 16 5 O -0.53 -9.95 15.07 5.56 0.08 -9.87 16 6 N -0.71 -9.85 4.70 -53.77 -0.25 -10.10 16 7 C 0.16 2.80 2.12 -67.89 -0.14 2.66 16 8 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 9 C -0.15 -2.75 5.65 -26.61 -0.15 -2.90 16 10 C 0.17 3.98 5.31 -3.71 -0.02 3.96 16 11 N -0.59 -14.05 3.00 -172.31 -0.52 -14.57 16 12 C -0.26 -6.82 9.58 -15.06 -0.14 -6.97 16 13 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 14 C 0.01 0.15 4.91 -17.43 -0.09 0.07 16 15 N -0.90 -25.45 11.19 55.49 0.62 -24.83 16 16 Si 0.90 20.92 29.59 -169.99 -5.03 15.89 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 C 0.12 2.38 6.14 -3.71 -0.02 2.36 16 21 C 0.08 1.31 3.14 -26.61 -0.08 1.23 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 23 O -0.57 -8.13 13.16 -35.23 -0.46 -8.60 16 24 C 0.29 3.34 3.79 37.16 0.14 3.48 16 25 F -0.20 -2.25 16.30 2.25 0.04 -2.21 16 26 F -0.19 -2.81 15.90 2.25 0.04 -2.78 16 27 H 0.07 0.78 7.80 -51.93 -0.41 0.38 16 28 H 0.07 0.60 7.56 -51.93 -0.39 0.21 16 29 H 0.07 0.60 7.80 -51.93 -0.41 0.20 16 30 H 0.08 0.52 7.80 -51.93 -0.41 0.12 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.53 7.56 -51.93 -0.39 0.13 16 33 H 0.40 4.47 7.44 -40.82 -0.30 4.16 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 2.43 6.04 -51.93 -0.31 2.12 16 37 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.37 3.77 9.08 45.56 0.41 4.18 16 42 H 0.12 1.21 8.10 -51.93 -0.42 0.79 16 LS Contribution 343.91 15.07 5.18 5.18 Total: -1.00 -31.73 343.91 -5.88 -37.60 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.52 Total: 6.23 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -0.06 Total: 8.05 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.15 Total: -49.50 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.38 Total: -18.46 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.07 Total: -4.99 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.73 -5.88 -37.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099998365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.182 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds