Wall clock time and date at job start Tue Mar 31 2020 09:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47262 * 2 1 4 4 C 1.50705 * 109.46739 * 240.00006 * 2 1 3 5 5 O 1.21282 * 119.99673 * 239.99896 * 4 2 1 6 6 N 1.34774 * 120.00152 * 60.00578 * 4 2 1 7 7 C 1.46497 * 120.00144 * 179.97438 * 6 4 2 8 8 H 1.09003 * 109.45991 * 34.97114 * 7 6 4 9 9 C 1.53041 * 109.45747 * 274.99776 * 7 6 4 10 10 C 1.53195 * 109.30905 * 178.61168 * 9 7 6 11 11 N 1.46928 * 108.77529 * 54.64041 * 10 9 7 12 12 C 1.36933 * 120.63197 * 126.41357 * 11 10 9 13 13 H 1.08007 * 119.99463 * 207.67050 * 12 11 10 14 14 C 1.38807 * 120.00581 * 27.66285 * 12 11 10 15 15 N 1.31628 * 119.99542 * 17.37286 * 14 12 11 16 16 Si 1.86798 * 120.00634 * 197.37006 * 14 12 11 17 17 H 1.48505 * 109.46666 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47471 * 120.00018 * 16 14 12 19 19 H 1.48495 * 109.47276 * 240.00443 * 16 14 12 20 20 C 1.46933 * 118.73502 * 306.38517 * 11 10 9 21 21 C 1.53037 * 109.45994 * 154.93037 * 7 6 4 22 22 H 1.09002 * 109.50036 * 61.43492 * 21 7 6 23 23 O 1.42898 * 109.49841 * 301.33321 * 21 7 6 24 24 C 1.53002 * 109.46740 * 120.00348 * 2 1 3 25 25 F 1.39898 * 109.47084 * 299.99672 * 24 2 1 26 26 F 1.39900 * 109.47399 * 59.99846 * 24 2 1 27 27 H 1.08999 * 109.47249 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46642 * 59.99643 * 1 2 3 29 29 H 1.08996 * 109.47127 * 300.00109 * 1 2 3 30 30 H 1.09000 * 109.46953 * 60.00384 * 3 2 1 31 31 H 1.09001 * 109.46593 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.47124 * 299.99745 * 3 2 1 33 33 H 0.97002 * 119.99889 * 359.97438 * 6 4 2 34 34 H 1.08998 * 109.50294 * 298.56485 * 9 7 6 35 35 H 1.09002 * 109.50107 * 58.66381 * 9 7 6 36 36 H 1.09001 * 109.58431 * 174.42070 * 10 9 7 37 37 H 1.09001 * 109.58959 * 294.70421 * 10 9 7 38 38 H 0.97003 * 119.99470 * 180.02562 * 15 14 12 39 39 H 1.08994 * 109.58095 * 173.39865 * 20 11 10 40 40 H 1.09003 * 109.58427 * 293.68243 * 20 11 10 41 41 H 0.96700 * 114.00011 * 179.97438 * 23 21 7 42 42 H 1.09001 * 109.46650 * 179.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6965 -1.1192 6 7 1.7068 -0.2499 -2.4546 7 6 2.1955 -0.9402 -3.6508 8 1 2.2328 -2.0130 -3.4612 9 6 3.5983 -0.4339 -3.9942 10 6 4.1199 -1.1826 -5.2247 11 7 3.1438 -1.0404 -6.3137 12 6 3.5303 -0.5698 -7.5401 13 1 2.8197 -0.0537 -8.1688 14 6 4.8352 -0.7558 -7.9753 15 7 5.6003 -1.6562 -7.3952 16 14 5.5055 0.2714 -9.3841 17 1 4.4535 1.2054 -9.8599 18 1 6.6809 1.0482 -8.9149 19 1 5.9150 -0.6222 -10.4972 20 6 1.7451 -1.4135 -6.0618 21 6 1.2502 -0.6623 -4.8218 22 1 1.2313 0.4078 -5.0281 23 8 -0.0661 -1.1077 -4.4882 24 6 2.0400 -0.7214 1.2492 25 9 1.5736 -0.0619 2.3915 26 9 1.5736 -2.0403 1.2492 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8899 30 1 1.6768 1.9563 0.8900 31 1 3.1301 1.4423 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.1489 0.5386 -2.5436 34 1 3.5574 0.6340 -4.2083 35 1 4.2656 -0.6110 -3.1507 36 1 5.0754 -0.7581 -5.5329 37 1 4.2497 -2.2375 -4.9829 38 1 6.5123 -1.7859 -7.6991 39 1 1.1338 -1.1414 -6.9221 40 1 1.6786 -2.4881 -5.8914 41 1 -0.7192 -0.9622 -5.1864 42 1 3.1300 -0.7217 1.2490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099998365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:05 Heat of formation + Delta-G solvation = -200.483675 kcal Electronic energy + Delta-G solvation = -26886.154535 eV Core-core repulsion = 22729.111890 eV Total energy + Delta-G solvation = -4157.042645 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.154 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.00811 -47.96654 -41.40833 -39.60022 -36.97823 -36.36791 -35.78529 -33.70424 -31.66269 -30.16793 -28.45373 -27.34320 -27.11670 -24.64625 -23.84621 -22.99974 -21.36664 -20.58278 -19.14829 -18.70279 -18.27691 -18.08434 -17.86342 -17.21675 -16.96669 -16.51075 -16.05222 -15.70415 -15.60875 -15.16241 -14.98823 -14.70347 -14.59065 -14.32548 -14.25115 -13.93371 -13.83670 -13.49914 -13.37144 -13.27251 -13.15104 -13.09867 -12.96837 -12.75701 -12.37099 -12.32240 -12.09305 -12.04630 -11.88375 -11.68938 -11.38287 -11.09395 -10.80722 -10.57946 -10.07978 -8.77515 -7.90683 -5.38107 1.48103 1.50355 1.50478 1.60666 1.91151 2.49276 2.67128 3.10521 3.16561 3.26290 3.39603 3.44679 3.62183 3.82133 3.88566 4.05212 4.08986 4.16695 4.22452 4.38823 4.52540 4.63852 4.66239 4.70685 4.74162 4.77957 4.84113 4.93644 5.02105 5.11682 5.13297 5.18920 5.36835 5.43338 5.60408 5.66032 6.33414 6.45824 6.88595 7.09374 7.15623 7.77705 8.30130 9.16746 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.026266 B = 0.003492 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.774217 B = 8017.091285 C = 8349.777102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C -0.140 4.140 4 C 0.522 3.478 5 O -0.579 6.579 6 N -0.693 5.693 7 C 0.170 3.830 8 H 0.052 0.948 9 C -0.127 4.127 10 C 0.179 3.821 11 N -0.603 5.603 12 C -0.265 4.265 13 H 0.078 0.922 14 C -0.050 4.050 15 N -0.937 5.937 16 Si 0.970 3.030 17 H -0.260 1.260 18 H -0.291 1.291 19 H -0.296 1.296 20 C 0.116 3.884 21 C 0.103 3.897 22 H 0.078 0.922 23 O -0.571 6.571 24 C 0.279 3.721 25 F -0.198 7.198 26 F -0.213 7.213 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.414 0.586 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.063 0.937 37 H -0.012 1.012 38 H 0.250 0.750 39 H 0.076 0.924 40 H 0.009 0.991 41 H 0.396 0.604 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.819 10.049 14.269 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.198 4.198 4 C 0.308 3.692 5 O -0.458 6.458 6 N -0.343 5.343 7 C 0.064 3.936 8 H 0.071 0.929 9 C -0.168 4.168 10 C 0.052 3.948 11 N -0.328 5.328 12 C -0.395 4.395 13 H 0.096 0.904 14 C -0.245 4.245 15 N -0.583 5.583 16 Si 0.798 3.202 17 H -0.184 1.184 18 H -0.218 1.218 19 H -0.223 1.223 20 C -0.010 4.010 21 C 0.042 3.958 22 H 0.096 0.904 23 O -0.378 6.378 24 C 0.225 3.775 25 F -0.179 7.179 26 F -0.194 7.194 27 H 0.069 0.931 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.252 0.748 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.006 0.994 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.027 0.973 41 H 0.246 0.754 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.947 9.135 14.863 20.596 hybrid contribution 0.357 -0.014 -1.324 1.371 sum -10.590 9.121 13.540 19.459 Atomic orbital electron populations 1.21884 0.89217 1.03234 1.05547 1.21856 1.00870 0.99337 0.90805 1.21927 1.02253 0.89678 1.05896 1.20527 0.79552 0.83750 0.85328 1.90757 1.39918 1.27938 1.87203 1.45707 1.52573 1.31835 1.04187 1.20660 0.92863 0.96397 0.83631 0.92927 1.22310 0.95148 1.01104 0.98200 1.20554 0.93635 0.94887 0.85705 1.44266 1.03855 1.75422 1.09222 1.19613 0.96153 1.28770 0.94923 0.90444 1.25869 0.99036 0.98618 1.01025 1.70222 1.08470 1.34096 1.45494 0.85172 0.78240 0.78270 0.78522 1.18427 1.21762 1.22304 1.21705 0.86686 0.95979 0.96673 1.22294 0.82277 0.98236 0.92965 0.90440 1.86457 1.18521 1.86453 1.46369 1.21691 0.98830 0.74361 0.82593 1.92961 1.91243 1.80786 1.52934 1.92963 1.91062 1.38691 1.96711 0.93137 0.88935 0.88882 0.88515 0.91347 0.88932 0.74810 0.90716 0.92283 0.91844 0.99358 0.94060 0.90594 0.97336 0.75355 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.13 71.98 0.58 -1.68 16 2 C -0.12 -2.41 0.58 -52.92 -0.03 -2.44 16 3 C -0.14 -1.75 8.25 71.98 0.59 -1.16 16 4 C 0.52 14.64 6.33 87.66 0.55 15.19 16 5 O -0.58 -21.99 15.07 -3.04 -0.05 -22.04 16 6 N -0.69 -17.85 4.70 -442.41 -2.08 -19.93 16 7 C 0.17 5.73 2.12 45.02 0.10 5.83 16 8 H 0.05 2.20 7.58 -2.39 -0.02 2.18 16 9 C -0.13 -4.79 5.65 30.67 0.17 -4.62 16 10 C 0.18 8.66 5.31 86.36 0.46 9.12 16 11 N -0.60 -29.02 3.00 -699.07 -2.09 -31.11 16 12 C -0.26 -13.80 9.58 84.03 0.81 -13.00 16 13 H 0.08 3.82 7.89 -2.91 -0.02 3.79 16 14 C -0.05 -2.70 4.91 84.86 0.42 -2.29 16 15 N -0.94 -54.95 11.19 21.65 0.24 -54.71 16 16 Si 0.97 43.15 29.59 68.60 2.03 45.18 16 17 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 18 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 19 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 20 C 0.12 4.51 6.14 86.36 0.53 5.04 16 21 C 0.10 3.13 3.14 30.67 0.10 3.22 16 22 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 23 O -0.57 -14.49 13.16 -148.98 -1.96 -16.45 16 24 C 0.28 6.19 3.79 71.98 0.27 6.46 16 25 F -0.20 -3.96 16.30 44.97 0.73 -3.22 16 26 F -0.21 -6.25 15.90 44.97 0.72 -5.53 16 27 H 0.05 1.03 7.80 -2.39 -0.02 1.01 16 28 H 0.09 1.13 7.56 -2.39 -0.02 1.11 16 29 H 0.09 1.17 7.80 -2.39 -0.02 1.16 16 30 H 0.10 0.89 7.80 -2.39 -0.02 0.88 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.09 0.87 7.56 -2.39 -0.02 0.85 16 33 H 0.41 7.74 7.44 -92.71 -0.69 7.05 16 34 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.06 3.45 6.04 -2.39 -0.01 3.43 16 37 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 38 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 39 H 0.08 2.67 7.93 -2.39 -0.02 2.65 16 40 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.40 6.44 9.08 -74.06 -0.67 5.77 16 42 H 0.12 2.49 8.10 -2.39 -0.02 2.47 16 Total: -1.00 -71.58 343.91 1.78 -69.81 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -0.31 Total: 18.33 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: 4.55 Total: 19.67 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -3.93 Total: -105.75 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -2.01 Total: -38.49 kcal Atomic # 9 Polarization: -10.20 SS G_CDS: 1.45 Total: -8.76 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -71.58 1.78 -69.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099998365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.677 kcal (2) G-P(sol) polarization free energy of solvation -71.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds