Wall clock time and date at job start Tue Mar 31 2020 09:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 F 1.39900 * 109.47189 * 2 1 4 4 F 1.39897 * 109.47258 * 239.99551 * 2 1 3 5 5 C 1.53003 * 109.47075 * 119.99653 * 2 1 3 6 6 C 1.50697 * 109.47013 * 179.97438 * 5 2 1 7 7 O 1.21280 * 120.00450 * 0.02562 * 6 5 2 8 8 N 1.34782 * 119.99956 * 180.02562 * 6 5 2 9 9 C 1.46503 * 119.99938 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.46995 * 179.97438 * 9 8 6 11 11 H 1.09003 * 108.56640 * 57.94184 * 10 9 8 12 12 C 1.46918 * 108.62068 * 175.75496 * 10 9 8 13 13 N 1.50107 * 106.78052 * 177.91899 * 12 10 9 14 14 C 1.36940 * 120.63500 * 111.32277 * 13 12 10 15 15 H 1.08001 * 119.99939 * 320.52454 * 14 13 12 16 16 C 1.38813 * 119.99889 * 140.52224 * 14 13 12 17 17 N 1.31617 * 120.00144 * 156.55379 * 16 14 13 18 18 Si 1.86803 * 120.00176 * 336.55588 * 16 14 13 19 19 H 1.48503 * 109.46980 * 95.54737 * 18 16 14 20 20 H 1.48490 * 109.47090 * 215.55056 * 18 16 14 21 21 H 1.48496 * 109.46909 * 335.55596 * 18 16 14 22 22 C 1.43421 * 118.73237 * 291.35059 * 13 12 10 23 23 C 1.55323 * 116.24165 * 89.34814 * 22 13 12 24 24 C 1.55191 * 108.87815 * 319.47152 * 23 22 13 25 25 O 1.39647 * 110.56475 * 322.14050 * 24 23 22 26 26 H 1.09003 * 109.46788 * 300.00063 * 1 2 3 27 27 H 1.08996 * 109.46824 * 60.00099 * 1 2 3 28 28 H 1.09000 * 109.46986 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46758 * 60.00436 * 5 2 1 30 30 H 1.09000 * 109.47073 * 299.99979 * 5 2 1 31 31 H 0.96996 * 119.99874 * 359.97438 * 8 6 5 32 32 H 1.09000 * 109.47066 * 299.99408 * 9 8 6 33 33 H 1.08999 * 109.47469 * 59.99797 * 9 8 6 34 34 H 1.09002 * 109.99335 * 297.24155 * 12 10 9 35 35 H 1.09006 * 109.99008 * 58.60350 * 12 10 9 36 36 H 0.96995 * 120.00300 * 180.02562 * 17 16 14 37 37 H 1.09011 * 108.12401 * 327.59330 * 22 13 12 38 38 H 1.08994 * 107.96649 * 210.98814 * 22 13 12 39 39 H 1.09005 * 109.57675 * 199.65398 * 23 22 13 40 40 H 1.09000 * 109.57111 * 79.28601 * 23 22 13 41 41 H 1.09003 * 109.26228 * 201.86360 * 24 23 22 42 42 H 1.08996 * 109.25640 * 82.41662 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6596 -1.1422 5 6 2.0400 -0.7212 1.2493 6 6 3.5470 -0.7217 1.2490 7 8 4.1535 -0.1966 0.3394 8 7 4.2209 -1.3058 2.2596 9 6 5.6859 -1.3059 2.2595 10 6 6.1959 -2.0272 3.5088 11 1 5.7945 -3.0406 3.5126 12 6 7.6613 -2.1062 3.4394 13 7 8.1197 -2.7722 4.7041 14 6 8.6638 -4.0286 4.6736 15 1 8.2509 -4.7800 4.0168 16 6 9.7459 -4.3363 5.4867 17 7 9.9840 -5.5871 5.8200 18 14 10.8643 -2.9751 6.1079 19 1 10.4303 -2.5589 7.4657 20 1 12.2627 -3.4711 6.1656 21 1 10.7887 -1.8131 5.1864 22 6 7.9765 -2.0679 5.9453 23 6 6.6342 -2.2719 6.6997 24 6 5.4744 -2.2772 5.6686 25 8 5.7114 -1.3420 4.6590 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6767 -1.7489 1.2493 30 1 1.6767 -0.2073 2.1393 31 1 3.7359 -1.7255 2.9872 32 1 6.0492 -1.8194 1.3693 33 1 6.0494 -0.2783 2.2599 34 1 7.9621 -2.6993 2.5758 35 1 8.0857 -1.1045 3.3709 36 1 10.7400 -5.8020 6.3885 37 1 8.0952 -1.0027 5.7464 38 1 8.7867 -2.3798 6.6042 39 1 6.4873 -1.4584 7.4102 40 1 6.6548 -3.2235 7.2308 41 1 4.5415 -2.0303 6.1754 42 1 5.3909 -3.2700 5.2266 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150259247.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:44 Heat of formation + Delta-G solvation = -153.191706 kcal Electronic energy + Delta-G solvation = -26217.999054 eV Core-core repulsion = 22063.007143 eV Total energy + Delta-G solvation = -4154.991911 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.154 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.02892 -47.01474 -39.98911 -39.07606 -35.37995 -34.86942 -33.59140 -32.27743 -31.79198 -29.53855 -28.50324 -25.92653 -25.37056 -22.85699 -22.04238 -21.28584 -20.52050 -20.05592 -17.80200 -17.74618 -17.11269 -16.97014 -16.12053 -15.95576 -15.72488 -15.55600 -15.26725 -14.57781 -14.36534 -14.10475 -13.93233 -13.55052 -13.39388 -13.24191 -13.16343 -13.07747 -12.89933 -12.52826 -12.46604 -12.40264 -12.28584 -11.93345 -11.66571 -11.32401 -11.23812 -10.82023 -10.56124 -10.43825 -10.24796 -10.03107 -9.78216 -9.66136 -9.11418 -9.05338 -8.55125 -6.88361 -6.09999 -3.54659 2.50561 2.92526 3.28511 3.43231 3.50476 3.50791 3.75854 4.11148 4.16139 4.22399 4.46062 4.71483 4.74965 4.77467 4.88557 5.14056 5.15464 5.31447 5.31785 5.38175 5.39403 5.55002 5.67460 5.74674 5.80050 5.94392 5.98573 6.10525 6.21292 6.39691 6.44278 6.52544 6.57168 6.75040 6.81501 7.38206 7.57603 7.98576 8.10300 8.24805 8.90157 9.61062 10.05563 11.04880 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.032598 B = 0.002959 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.741254 B = 9461.574879 C = 9684.893839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.307 3.693 3 F -0.193 7.193 4 F -0.193 7.193 5 C -0.190 4.190 6 C 0.509 3.491 7 O -0.526 6.526 8 N -0.717 5.717 9 C 0.116 3.884 10 C 0.063 3.937 11 H 0.069 0.931 12 C 0.112 3.888 13 N -0.599 5.599 14 C -0.276 4.276 15 H 0.076 0.924 16 C 0.043 3.957 17 N -0.894 5.894 18 Si 0.879 3.121 19 H -0.285 1.285 20 H -0.300 1.300 21 H -0.269 1.269 22 C 0.151 3.849 23 C -0.168 4.168 24 C 0.065 3.935 25 O -0.356 6.356 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.402 0.598 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.265 0.735 37 H 0.032 0.968 38 H 0.043 0.957 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.805 8.713 -5.707 22.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.270 3.730 3 F -0.174 7.174 4 F -0.174 7.174 5 C -0.231 4.231 6 C 0.294 3.706 7 O -0.402 6.402 8 N -0.369 5.369 9 C -0.008 4.008 10 C 0.003 3.997 11 H 0.087 0.913 12 C -0.013 4.013 13 N -0.321 5.321 14 C -0.404 4.404 15 H 0.094 0.906 16 C -0.159 4.159 17 N -0.534 5.534 18 Si 0.708 3.292 19 H -0.213 1.213 20 H -0.228 1.228 21 H -0.193 1.193 22 C 0.023 3.977 23 C -0.209 4.209 24 C -0.012 4.012 25 O -0.274 6.274 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.236 0.764 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.199 9.171 -6.321 22.196 hybrid contribution 0.623 0.180 0.937 1.140 sum -18.576 9.351 -5.384 21.482 Atomic orbital electron populations 1.22803 0.91306 1.05532 1.05622 1.20600 0.92952 0.76098 0.83367 1.93048 1.90581 1.36957 1.96775 1.93047 1.90579 1.80743 1.52984 1.22858 0.95380 1.05082 0.99791 1.20136 0.89056 0.78871 0.82534 1.90794 1.69880 1.44107 1.35451 1.45837 1.07883 1.58399 1.24747 1.21737 0.78817 1.02289 0.97992 1.21992 0.97815 0.95069 0.84789 0.91273 1.21046 0.91197 0.97543 0.91508 1.44106 1.71683 1.17045 0.99280 1.18697 1.10131 0.85740 1.25851 0.90623 1.25519 0.96869 0.95531 0.97949 1.69876 1.29672 1.17899 1.35994 0.86885 0.80204 0.83554 0.78520 1.21310 1.22810 1.19329 1.20637 0.94145 0.94695 0.88189 1.23497 0.98032 1.01136 0.98273 1.22431 0.96571 0.92354 0.89885 1.87603 1.84420 1.32495 1.22897 0.89138 0.89690 0.89126 0.85929 0.85896 0.76384 0.90131 0.90706 0.90002 0.93786 0.92549 0.94921 0.93885 0.92621 0.91536 0.92124 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.03 9.38 37.16 0.35 -0.68 16 2 C 0.31 2.99 1.85 -26.73 -0.05 2.94 16 3 F -0.19 -2.49 16.15 2.25 0.04 -2.45 16 4 F -0.19 -2.47 16.14 2.25 0.04 -2.44 16 5 C -0.19 -1.50 5.30 -27.88 -0.15 -1.65 16 6 C 0.51 6.46 7.60 -10.98 -0.08 6.37 16 7 O -0.53 -9.09 14.83 5.56 0.08 -9.01 16 8 N -0.72 -8.40 5.43 -60.29 -0.33 -8.73 16 9 C 0.12 1.61 5.24 -4.04 -0.02 1.58 16 10 C 0.06 0.98 2.10 -29.64 -0.06 0.92 16 11 H 0.07 1.09 6.77 -51.93 -0.35 0.74 16 12 C 0.11 2.09 5.58 -4.94 -0.03 2.06 16 13 N -0.60 -13.62 2.16 -174.51 -0.38 -14.00 16 14 C -0.28 -7.37 9.93 -15.06 -0.15 -7.52 16 15 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 16 C 0.04 1.21 5.27 -17.43 -0.09 1.11 16 17 N -0.89 -26.49 13.97 55.49 0.78 -25.72 16 18 Si 0.88 22.00 25.24 -169.99 -4.29 17.71 16 19 H -0.29 -6.99 6.74 56.52 0.38 -6.61 16 20 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 C 0.15 3.25 4.30 -4.44 -0.02 3.24 16 23 C -0.17 -3.03 6.75 -24.34 -0.16 -3.20 16 24 C 0.07 1.01 6.38 38.32 0.24 1.25 16 25 O -0.36 -5.68 9.54 -31.96 -0.30 -5.99 16 26 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.12 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.40 3.76 8.33 -40.82 -0.34 3.42 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.08 1.49 8.00 -51.93 -0.42 1.08 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.03 0.68 7.99 -51.92 -0.41 0.26 16 38 H 0.04 1.03 3.44 -51.93 -0.18 0.85 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.94 6.66 -51.93 -0.35 0.59 16 LS Contribution 341.19 15.07 5.14 5.14 Total: -1.00 -33.99 341.19 -5.73 -39.72 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -6.27 Total: -0.67 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -0.22 Total: 6.43 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.07 Total: -48.45 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.22 Total: -15.00 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.07 Total: -4.89 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.29 Total: 17.71 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.99 -5.73 -39.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150259247.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.472 kcal (2) G-P(sol) polarization free energy of solvation -33.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds