Wall clock time and date at job start Tue Mar 31 2020 09:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 F 1.39900 * 109.47189 * 2 1 4 4 F 1.39897 * 109.47258 * 239.99551 * 2 1 3 5 5 C 1.53003 * 109.47075 * 119.99653 * 2 1 3 6 6 C 1.50697 * 109.47013 * 179.97438 * 5 2 1 7 7 O 1.21280 * 120.00450 * 0.02562 * 6 5 2 8 8 N 1.34782 * 119.99956 * 180.02562 * 6 5 2 9 9 C 1.46503 * 119.99938 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.46995 * 179.97438 * 9 8 6 11 11 H 1.09003 * 108.56640 * 57.94184 * 10 9 8 12 12 C 1.46918 * 108.62068 * 175.75496 * 10 9 8 13 13 N 1.50107 * 106.78052 * 177.91899 * 12 10 9 14 14 C 1.36940 * 120.63500 * 111.32277 * 13 12 10 15 15 H 1.08001 * 119.99939 * 320.52454 * 14 13 12 16 16 C 1.38813 * 119.99889 * 140.52224 * 14 13 12 17 17 N 1.31617 * 120.00144 * 156.55379 * 16 14 13 18 18 Si 1.86803 * 120.00176 * 336.55588 * 16 14 13 19 19 H 1.48503 * 109.46980 * 95.54737 * 18 16 14 20 20 H 1.48490 * 109.47090 * 215.55056 * 18 16 14 21 21 H 1.48496 * 109.46909 * 335.55596 * 18 16 14 22 22 C 1.43421 * 118.73237 * 291.35059 * 13 12 10 23 23 C 1.55323 * 116.24165 * 89.34814 * 22 13 12 24 24 C 1.55191 * 108.87815 * 319.47152 * 23 22 13 25 25 O 1.39647 * 110.56475 * 322.14050 * 24 23 22 26 26 H 1.09003 * 109.46788 * 300.00063 * 1 2 3 27 27 H 1.08996 * 109.46824 * 60.00099 * 1 2 3 28 28 H 1.09000 * 109.46986 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46758 * 60.00436 * 5 2 1 30 30 H 1.09000 * 109.47073 * 299.99979 * 5 2 1 31 31 H 0.96996 * 119.99874 * 359.97438 * 8 6 5 32 32 H 1.09000 * 109.47066 * 299.99408 * 9 8 6 33 33 H 1.08999 * 109.47469 * 59.99797 * 9 8 6 34 34 H 1.09002 * 109.99335 * 297.24155 * 12 10 9 35 35 H 1.09006 * 109.99008 * 58.60350 * 12 10 9 36 36 H 0.96995 * 120.00300 * 180.02562 * 17 16 14 37 37 H 1.09011 * 108.12401 * 327.59330 * 22 13 12 38 38 H 1.08994 * 107.96649 * 210.98814 * 22 13 12 39 39 H 1.09005 * 109.57675 * 199.65398 * 23 22 13 40 40 H 1.09000 * 109.57111 * 79.28601 * 23 22 13 41 41 H 1.09003 * 109.26228 * 201.86360 * 24 23 22 42 42 H 1.08996 * 109.25640 * 82.41662 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6596 -1.1422 5 6 2.0400 -0.7212 1.2493 6 6 3.5470 -0.7217 1.2490 7 8 4.1535 -0.1966 0.3394 8 7 4.2209 -1.3058 2.2596 9 6 5.6859 -1.3059 2.2595 10 6 6.1959 -2.0272 3.5088 11 1 5.7945 -3.0406 3.5126 12 6 7.6613 -2.1062 3.4394 13 7 8.1197 -2.7722 4.7041 14 6 8.6638 -4.0286 4.6736 15 1 8.2509 -4.7800 4.0168 16 6 9.7459 -4.3363 5.4867 17 7 9.9840 -5.5871 5.8200 18 14 10.8643 -2.9751 6.1079 19 1 10.4303 -2.5589 7.4657 20 1 12.2627 -3.4711 6.1656 21 1 10.7887 -1.8131 5.1864 22 6 7.9765 -2.0679 5.9453 23 6 6.6342 -2.2719 6.6997 24 6 5.4744 -2.2772 5.6686 25 8 5.7114 -1.3420 4.6590 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6767 -1.7489 1.2493 30 1 1.6767 -0.2073 2.1393 31 1 3.7359 -1.7255 2.9872 32 1 6.0492 -1.8194 1.3693 33 1 6.0494 -0.2783 2.2599 34 1 7.9621 -2.6993 2.5758 35 1 8.0857 -1.1045 3.3709 36 1 10.7400 -5.8020 6.3885 37 1 8.0952 -1.0027 5.7464 38 1 8.7867 -2.3798 6.6042 39 1 6.4873 -1.4584 7.4102 40 1 6.6548 -3.2235 7.2308 41 1 4.5415 -2.0303 6.1754 42 1 5.3909 -3.2700 5.2266 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150259247.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:44 Heat of formation + Delta-G solvation = -177.993525 kcal Electronic energy + Delta-G solvation = -26219.074542 eV Core-core repulsion = 22063.007143 eV Total energy + Delta-G solvation = -4156.067399 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.154 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.83233 -47.85787 -41.18454 -40.27151 -37.07156 -36.04262 -34.29891 -33.85567 -33.46825 -30.72511 -29.49311 -27.31550 -26.99074 -24.28271 -22.91321 -22.56876 -21.88221 -21.36919 -18.90330 -18.60502 -18.55858 -17.86961 -17.49887 -17.46348 -16.79494 -16.76961 -16.31723 -16.03182 -15.73576 -15.57707 -14.95332 -14.81149 -14.51605 -14.36294 -14.22523 -14.17566 -13.97752 -13.73716 -13.70251 -13.42083 -13.22555 -13.03636 -12.94955 -12.80553 -12.65317 -12.34786 -12.03296 -11.95247 -11.75763 -11.64217 -11.32795 -11.06677 -10.61474 -10.44148 -10.14117 -8.77107 -8.25464 -5.65737 1.27869 1.38393 1.49356 1.57386 2.04318 2.38473 2.85282 2.91389 3.00936 3.18090 3.20955 3.51854 3.53356 3.93266 3.99659 4.08026 4.21047 4.27513 4.37664 4.39228 4.45542 4.54125 4.56552 4.67041 4.69553 4.71715 4.79604 4.88103 4.97076 5.08066 5.08475 5.10388 5.16870 5.27014 5.36802 5.91327 6.12024 6.29442 6.48203 6.94561 7.19206 7.56540 8.04503 8.93542 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.032598 B = 0.002959 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.741254 B = 9461.574879 C = 9684.893839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.285 3.715 3 F -0.218 7.218 4 F -0.218 7.218 5 C -0.181 4.181 6 C 0.502 3.498 7 O -0.581 6.581 8 N -0.707 5.707 9 C 0.126 3.874 10 C 0.076 3.924 11 H 0.070 0.930 12 C 0.109 3.891 13 N -0.611 5.611 14 C -0.258 4.258 15 H 0.048 0.952 16 C -0.009 4.009 17 N -0.940 5.940 18 Si 0.937 3.063 19 H -0.278 1.278 20 H -0.307 1.307 21 H -0.266 1.266 22 C 0.142 3.858 23 C -0.167 4.167 24 C 0.069 3.931 25 O -0.355 6.355 26 H 0.113 0.887 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.417 0.583 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.264 0.736 37 H 0.041 0.959 38 H 0.018 0.982 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.101 0.899 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.501 9.937 -4.877 25.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.248 3.752 3 F -0.199 7.199 4 F -0.199 7.199 5 C -0.220 4.220 6 C 0.289 3.711 7 O -0.460 6.460 8 N -0.359 5.359 9 C 0.001 3.999 10 C 0.017 3.983 11 H 0.088 0.912 12 C -0.015 4.015 13 N -0.334 5.334 14 C -0.388 4.388 15 H 0.065 0.935 16 C -0.206 4.206 17 N -0.583 5.583 18 Si 0.766 3.234 19 H -0.205 1.205 20 H -0.235 1.235 21 H -0.191 1.191 22 C 0.016 3.984 23 C -0.207 4.207 24 C -0.009 4.009 25 O -0.273 6.273 26 H 0.132 0.868 27 H 0.099 0.901 28 H 0.132 0.868 29 H 0.177 0.823 30 H 0.176 0.824 31 H 0.254 0.746 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.036 0.964 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.119 0.881 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -21.940 10.418 -5.467 24.895 hybrid contribution 1.422 -0.188 0.644 1.572 sum -20.518 10.230 -4.823 23.428 Atomic orbital electron populations 1.22818 0.87491 1.07360 1.06593 1.21430 0.95619 0.74925 0.83187 1.92994 1.91175 1.38883 1.96859 1.92994 1.91172 1.81133 1.54590 1.22979 0.91270 1.07543 1.00245 1.21013 0.91141 0.77492 0.81452 1.90776 1.71416 1.46398 1.37443 1.45720 1.06866 1.58142 1.25191 1.21430 0.80488 1.01180 0.96794 1.21680 0.95632 0.95454 0.85574 0.91168 1.21200 0.93335 0.97236 0.89685 1.44203 1.71866 1.16106 1.01265 1.18604 1.09279 0.86889 1.24016 0.93475 1.26043 0.98336 0.97050 0.99198 1.69976 1.30615 1.19685 1.38013 0.85947 0.78022 0.81034 0.78422 1.20473 1.23515 1.19091 1.20736 0.95530 0.94698 0.87468 1.23452 0.96950 1.01362 0.98960 1.22478 0.97049 0.92087 0.89268 1.87619 1.84124 1.32631 1.22909 0.86842 0.90119 0.86837 0.82319 0.82377 0.74629 0.90482 0.91846 0.90136 0.93235 0.92685 0.94088 0.96382 0.90147 0.92964 0.88096 0.93208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.35 9.38 71.98 0.68 -0.67 16 2 C 0.28 4.99 1.85 30.60 0.06 5.04 16 3 F -0.22 -5.48 16.15 44.97 0.73 -4.76 16 4 F -0.22 -5.47 16.14 44.97 0.73 -4.74 16 5 C -0.18 -2.22 5.30 29.85 0.16 -2.06 16 6 C 0.50 11.77 7.60 87.66 0.67 12.44 16 7 O -0.58 -19.98 14.83 -3.03 -0.04 -20.02 16 8 N -0.71 -14.81 5.43 -463.05 -2.52 -17.33 16 9 C 0.13 3.32 5.24 86.38 0.45 3.78 16 10 C 0.08 2.23 2.10 28.71 0.06 2.29 16 11 H 0.07 2.09 6.77 -2.39 -0.02 2.07 16 12 C 0.11 3.99 5.58 83.79 0.47 4.45 16 13 N -0.61 -27.43 2.16 -706.03 -1.52 -28.95 16 14 C -0.26 -13.98 9.93 84.03 0.83 -13.15 16 15 H 0.05 2.79 8.06 -2.91 -0.02 2.76 16 16 C -0.01 -0.49 5.27 84.86 0.45 -0.04 16 17 N -0.94 -57.04 13.97 21.65 0.30 -56.74 16 18 Si 0.94 46.08 25.24 68.60 1.73 47.81 16 19 H -0.28 -13.15 6.74 99.48 0.67 -12.48 16 20 H -0.31 -15.25 7.11 99.48 0.71 -14.55 16 21 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 22 C 0.14 5.94 4.30 87.75 0.38 6.32 16 23 C -0.17 -5.60 6.75 32.14 0.22 -5.38 16 24 C 0.07 1.89 6.38 72.73 0.46 2.36 16 25 O -0.35 -10.21 9.54 -137.27 -1.31 -11.52 16 26 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.16 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.16 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.42 6.25 8.33 -92.71 -0.77 5.47 16 32 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.08 2.92 8.00 -2.39 -0.02 2.90 16 35 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 37 H 0.04 1.62 7.99 -2.38 -0.02 1.60 16 38 H 0.02 0.84 3.44 -2.39 -0.01 0.84 16 39 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.05 1.48 6.66 -2.39 -0.02 1.46 16 Total: -1.00 -76.93 341.19 3.20 -73.73 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 0.23 Total: 7.15 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: 4.88 Total: 15.37 kcal Atomic # 7 Polarization: -99.29 SS G_CDS: -3.74 Total: -103.02 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -1.35 Total: -31.54 kcal Atomic # 9 Polarization: -10.95 SS G_CDS: 1.45 Total: -9.50 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.73 Total: 47.81 kcal Total: -76.93 3.20 -73.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150259247.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.262 kcal (2) G-P(sol) polarization free energy of solvation -76.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds