Wall clock time and date at job start Tue Mar 31 2020 09:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.47001 * 2 1 4 4 C 1.53007 * 109.47001 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47036 * 180.02562 * 4 3 2 6 6 C 1.37090 * 120.00265 * 90.00069 * 5 4 3 7 7 H 1.08001 * 120.00125 * 223.10370 * 6 5 4 8 8 C 1.38959 * 120.00025 * 42.83091 * 6 5 4 9 9 N 1.31408 * 119.99858 * 198.10010 * 8 6 5 10 10 Si 1.86803 * 120.00027 * 18.09299 * 8 6 5 11 11 H 1.48503 * 109.46867 * 5.89068 * 10 8 6 12 12 H 1.48497 * 109.46952 * 125.88910 * 10 8 6 13 13 H 1.48501 * 109.47131 * 245.89318 * 10 8 6 14 14 C 1.34776 * 119.99761 * 269.99839 * 5 4 3 15 15 O 1.21295 * 120.00025 * 5.69694 * 14 5 4 16 16 C 1.50699 * 119.99941 * 185.70520 * 14 5 4 17 17 C 1.50701 * 115.55477 * 85.02885 * 16 14 5 18 18 C 1.38233 * 119.58401 * 289.77633 * 17 16 14 19 19 C 1.38598 * 119.18592 * 179.76908 * 18 17 16 20 20 C 1.38876 * 118.39623 * 0.49531 * 19 18 17 21 21 F 1.35106 * 120.44054 * 179.77250 * 20 19 18 22 22 C 1.38415 * 119.11484 * 359.74693 * 20 19 18 23 23 N 1.31844 * 119.59020 * 110.04407 * 17 16 14 24 24 C 1.52998 * 117.49719 * 299.31708 * 16 14 5 25 25 C 1.52996 * 60.00343 * 252.51259 * 24 16 14 26 26 H 1.09004 * 109.46737 * 60.00121 * 1 2 3 27 27 H 1.09002 * 109.46940 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47014 * 299.99916 * 1 2 3 29 29 H 1.09002 * 109.46678 * 239.99918 * 2 1 3 30 30 H 1.09001 * 109.46589 * 120.00387 * 2 1 3 31 31 H 1.09002 * 109.47471 * 60.00404 * 3 2 1 32 32 H 1.09001 * 109.47766 * 299.99667 * 3 2 1 33 33 H 1.08995 * 109.47014 * 60.00084 * 4 3 2 34 34 H 1.09004 * 109.47239 * 300.00046 * 4 3 2 35 35 H 0.97003 * 119.99926 * 184.97932 * 9 8 6 36 36 H 1.08005 * 120.41182 * 359.97438 * 18 17 16 37 37 H 1.08003 * 120.79764 * 180.25712 * 19 18 17 38 38 H 1.08006 * 119.64193 * 180.02562 * 22 20 19 39 39 H 1.09003 * 117.49946 * 0.02562 * 24 16 14 40 40 H 1.09004 * 117.49846 * 145.01945 * 24 16 14 41 41 H 1.08995 * 117.50121 * 252.51065 * 25 24 16 42 42 H 1.08997 * 117.50151 * 107.48962 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.2864 3.4696 1.1888 7 1 3.9709 4.4948 1.3151 8 6 4.9184 2.8036 2.2318 9 7 4.8270 3.2667 3.4582 10 14 5.8977 1.2498 1.8907 11 1 5.9654 1.0192 0.4252 12 1 7.2721 1.4022 2.4319 13 1 5.2339 0.0930 2.5437 14 6 4.2835 3.4593 -1.1657 15 8 3.9850 2.9268 -2.2138 16 6 4.9063 4.8316 -1.1683 17 6 6.4122 4.8622 -1.1187 18 6 7.0645 4.4887 0.0414 19 6 8.4498 4.5153 0.0764 20 6 9.1313 4.9292 -1.0607 21 9 10.4815 4.9753 -1.0706 22 6 8.4088 5.2933 -2.1838 23 7 7.0908 5.2499 -2.1805 24 6 4.1524 5.9509 -0.4473 25 6 4.2038 5.9247 -1.9762 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9331 0.9287 0.8909 35 1 5.3263 2.8443 4.1746 36 1 6.5018 4.1767 0.9089 37 1 8.9861 4.2249 0.9677 38 1 8.9302 5.6161 -3.0729 39 1 3.2062 5.6945 0.0292 40 1 4.7456 6.7095 0.0633 41 1 4.8307 6.6660 -2.4715 42 1 3.2912 5.6512 -2.5059 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178078429.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:00 Heat of formation + Delta-G solvation = -17.906911 kcal Electronic energy + Delta-G solvation = -26002.500385 eV Core-core repulsion = 22284.144088 eV Total energy + Delta-G solvation = -3718.356298 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.81087 -40.30828 -38.89421 -36.29671 -35.28771 -34.08144 -32.18911 -32.00692 -30.33521 -28.75607 -25.31622 -24.58215 -23.50793 -23.46200 -21.84888 -21.37209 -20.71675 -18.87693 -17.68675 -17.31752 -16.80632 -16.25069 -15.66909 -15.54914 -15.27648 -14.80577 -14.57871 -14.20161 -13.85502 -13.62670 -13.55479 -13.13749 -13.11018 -12.90350 -12.62586 -12.51987 -12.23951 -11.96210 -11.69786 -11.46189 -11.17015 -11.01494 -10.73751 -10.69014 -10.52599 -10.15838 -9.94204 -9.92720 -9.83445 -9.63595 -9.34214 -9.22283 -8.93547 -8.31193 -7.84186 -6.62100 -4.27427 1.13517 1.38908 2.95090 3.10761 3.19417 3.46896 3.81297 4.00548 4.12527 4.20203 4.32432 4.59921 4.82351 4.93096 4.97155 5.16420 5.28975 5.33519 5.46824 5.48787 5.55746 5.61142 5.76475 5.88809 5.99671 6.08060 6.12211 6.12707 6.17924 6.19986 6.24870 6.33057 6.37806 6.40239 6.46465 6.47241 6.61585 6.75079 6.86781 6.93763 7.26925 7.95021 8.12034 8.15150 8.81242 9.20750 9.55653 10.47128 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.014770 B = 0.005681 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.287187 B = 4927.944817 C = 5776.848847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.127 4.127 4 C 0.114 3.886 5 N -0.460 5.460 6 C -0.342 4.342 7 H 0.115 0.885 8 C 0.071 3.929 9 N -0.854 5.854 10 Si 0.850 3.150 11 H -0.257 1.257 12 H -0.282 1.282 13 H -0.274 1.274 14 C 0.523 3.477 15 O -0.581 6.581 16 C -0.078 4.078 17 C 0.174 3.826 18 C -0.120 4.120 19 C -0.116 4.116 20 C 0.034 3.966 21 F -0.138 7.138 22 C 0.066 3.934 23 N -0.449 5.449 24 C -0.138 4.138 25 C -0.143 4.143 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.276 0.724 36 H 0.176 0.824 37 H 0.144 0.856 38 H 0.163 0.837 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.462 1.538 -3.702 4.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.165 4.165 4 C -0.009 4.009 5 N -0.180 5.180 6 C -0.469 4.469 7 H 0.133 0.867 8 C -0.136 4.136 9 N -0.489 5.489 10 Si 0.675 3.325 11 H -0.181 1.181 12 H -0.209 1.209 13 H -0.200 1.200 14 C 0.310 3.690 15 O -0.464 6.464 16 C -0.082 4.082 17 C 0.036 3.964 18 C -0.139 4.139 19 C -0.143 4.143 20 C 0.013 3.987 21 F -0.116 7.116 22 C -0.093 4.093 23 N -0.157 5.157 24 C -0.176 4.176 25 C -0.180 4.180 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.193 0.807 37 H 0.162 0.838 38 H 0.180 0.820 39 H 0.126 0.874 40 H 0.114 0.886 41 H 0.118 0.882 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.899 1.441 -4.729 5.025 hybrid contribution 1.533 -1.202 1.039 2.207 sum 2.431 0.239 -3.690 4.425 Atomic orbital electron populations 1.21739 0.96135 1.00888 1.01760 1.21485 0.95638 0.97502 1.01554 1.21871 0.96002 0.96010 1.02663 1.21584 0.93856 0.85090 1.00382 1.43712 1.57073 1.11680 1.05555 1.19372 1.39535 1.00306 0.87690 0.86743 1.25371 0.96153 0.97404 0.94694 1.69762 1.37871 1.42041 0.99253 0.87253 0.80678 0.84363 0.80157 1.18062 1.20874 1.20010 1.19150 0.80498 0.85833 0.83502 1.90564 1.55955 1.67782 1.32127 1.19407 0.88320 0.91614 1.08893 1.19960 0.93626 0.94283 0.88523 1.22730 0.93497 0.96292 1.01423 1.21743 0.95212 0.99430 0.97907 1.18856 0.77626 1.05039 0.97207 1.91479 1.28687 1.94409 1.97058 1.22741 0.89976 0.99554 0.97008 1.67421 1.07004 1.12827 1.28450 1.23064 1.01903 0.98256 0.94332 1.22971 1.01760 0.99038 0.94247 0.92903 0.93301 0.92755 0.92324 0.92321 0.91117 0.91882 0.91619 0.92424 0.91388 0.80658 0.83794 0.82000 0.87384 0.88568 0.88153 0.88454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.56 16 2 C -0.12 -1.89 5.93 -26.73 -0.16 -2.05 16 3 C -0.13 -2.34 5.54 -26.73 -0.15 -2.49 16 4 C 0.11 2.41 3.70 -4.04 -0.01 2.40 16 5 N -0.46 -10.35 2.08 -114.80 -0.24 -10.59 16 6 C -0.34 -7.89 6.91 -14.93 -0.10 -8.00 16 7 H 0.12 2.71 5.38 -52.49 -0.28 2.42 16 8 C 0.07 1.70 4.43 -17.47 -0.08 1.62 16 9 N -0.85 -21.33 13.95 55.50 0.77 -20.56 16 10 Si 0.85 18.92 24.73 -169.99 -4.20 14.71 16 11 H -0.26 -5.87 6.36 56.52 0.36 -5.51 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 14 C 0.52 11.91 6.76 -10.99 -0.07 11.84 16 15 O -0.58 -14.62 16.70 5.54 0.09 -14.53 16 16 C -0.08 -1.56 1.39 -156.81 -0.22 -1.78 16 17 C 0.17 3.39 5.90 -82.59 -0.49 2.90 16 18 C -0.12 -2.29 9.61 -39.45 -0.38 -2.67 16 19 C -0.12 -1.94 10.16 -39.21 -0.40 -2.34 16 20 C 0.03 0.54 7.34 -39.28 -0.29 0.25 16 21 F -0.14 -2.03 17.28 2.25 0.04 -1.99 16 22 C 0.07 1.03 11.17 -17.47 -0.20 0.84 16 23 N -0.45 -8.22 9.90 -9.42 -0.09 -8.32 16 24 C -0.14 -2.36 8.10 -26.73 -0.22 -2.58 16 25 C -0.14 -2.43 9.71 -26.73 -0.26 -2.69 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.42 7.51 -51.93 -0.39 1.03 16 34 H 0.06 1.24 3.90 -51.93 -0.20 1.03 16 35 H 0.28 6.52 8.32 -40.82 -0.34 6.18 16 36 H 0.18 3.65 4.47 -52.48 -0.23 3.41 16 37 H 0.14 2.10 8.06 -52.48 -0.42 1.68 16 38 H 0.16 1.98 8.06 -52.48 -0.42 1.56 16 39 H 0.11 1.88 7.25 -51.93 -0.38 1.51 16 40 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.10 1.58 8.02 -51.93 -0.42 1.16 16 42 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 LS Contribution 346.02 15.07 5.21 5.21 Total: -1.00 -26.99 346.02 -6.80 -33.79 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -5.73 Total: 8.58 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -2.65 Total: -6.31 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.44 Total: -39.47 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.09 Total: -14.53 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.20 Total: 14.71 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -26.99 -6.80 -33.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178078429.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.880 kcal (2) G-P(sol) polarization free energy of solvation -26.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds