Wall clock time and date at job start Tue Mar 31 2020 09:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46989 * 2 1 4 4 N 1.46901 * 109.47519 * 120.00292 * 2 1 3 5 5 C 1.47955 * 111.00083 * 89.59074 * 4 2 1 6 6 C 1.53935 * 86.18067 * 137.58489 * 5 4 2 7 7 C 1.47956 * 111.00118 * 188.95571 * 4 2 1 8 8 H 1.09001 * 113.86242 * 108.08727 * 7 4 2 9 9 C 1.50704 * 113.75611 * 336.72915 * 7 4 2 10 10 O 1.21281 * 120.00101 * 329.12112 * 9 7 4 11 11 N 1.34776 * 119.99432 * 149.12098 * 9 7 4 12 12 C 1.40005 * 119.99891 * 183.53981 * 11 9 7 13 13 C 1.39370 * 119.90956 * 320.13120 * 12 11 9 14 14 C 1.38369 * 120.47379 * 179.97438 * 13 12 11 15 15 C 1.38010 * 120.28208 * 0.02562 * 14 13 12 16 16 F 1.35099 * 120.08929 * 180.02562 * 15 14 13 17 17 C 1.41006 * 119.81542 * 359.97438 * 15 14 13 18 18 C 1.41293 * 120.22665 * 179.97438 * 17 15 14 19 19 H 1.07994 * 120.00492 * 331.81900 * 18 17 15 20 20 C 1.39927 * 119.99775 * 151.82106 * 18 17 15 21 21 N 1.30845 * 120.00247 * 342.63229 * 20 18 17 22 22 Si 1.86801 * 119.99931 * 162.63440 * 20 18 17 23 23 H 1.48490 * 109.47395 * 89.99918 * 22 20 18 24 24 H 1.48500 * 109.46928 * 210.00118 * 22 20 18 25 25 H 1.48510 * 109.46846 * 329.99920 * 22 20 18 26 26 C 1.38141 * 119.91496 * 140.11404 * 12 11 9 27 27 H 1.09003 * 109.46883 * 299.99742 * 1 2 3 28 28 H 1.08993 * 109.47530 * 59.99825 * 1 2 3 29 29 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47102 * 240.00505 * 2 1 3 31 31 H 1.08995 * 109.47023 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47128 * 300.00421 * 3 2 1 33 33 H 1.09003 * 109.47097 * 60.00389 * 3 2 1 34 34 H 1.09003 * 113.76155 * 23.26555 * 5 4 2 35 35 H 1.09008 * 113.86178 * 251.91624 * 5 4 2 36 36 H 1.08994 * 113.73473 * 221.92115 * 6 5 4 37 37 H 1.08998 * 113.73243 * 90.63712 * 6 5 4 38 38 H 0.96999 * 120.00309 * 3.53939 * 11 9 7 39 39 H 1.08002 * 119.76458 * 0.02562 * 13 12 11 40 40 H 1.07996 * 119.86045 * 180.28023 * 14 13 12 41 41 H 0.96996 * 120.00530 * 180.02562 * 21 20 18 42 42 H 1.08003 * 120.14255 * 0.04070 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 2.1873 -2.1403 0.9445 6 6 3.5080 -2.0203 1.7260 7 6 3.4830 -0.5288 1.3459 8 1 3.7730 0.1365 2.1591 9 6 4.1918 -0.2200 0.0523 10 8 3.7576 -0.6507 -0.9950 11 7 5.3083 0.5349 0.0594 12 6 5.9252 0.8837 -1.1480 13 6 6.0134 -0.0504 -2.1786 14 6 6.6200 0.2821 -3.3770 15 6 7.1456 1.5444 -3.5643 16 9 7.7366 1.8649 -4.7361 17 6 7.0629 2.4989 -2.5297 18 6 7.5985 3.7936 -2.7119 19 1 8.4295 3.9444 -3.3849 20 6 7.0523 4.8804 -2.0203 21 7 5.8637 4.7827 -1.4819 22 14 8.0198 6.4708 -1.8655 23 1 7.7000 7.3584 -3.0121 24 1 7.6552 7.1505 -0.5966 25 1 9.4736 6.1676 -1.8647 26 6 6.4444 2.1529 -1.3149 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 2.3210 -2.3883 -0.1085 35 1 1.4408 -2.7640 1.4366 36 1 4.3341 -2.5732 1.2789 37 1 3.4029 -2.2023 2.7955 38 1 5.6845 0.8365 0.9011 39 1 5.6046 -1.0405 -2.0412 40 1 6.6789 -0.4480 -4.1706 41 1 5.4848 5.5362 -1.0028 42 1 6.3761 2.8762 -0.5158 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182862228.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:12:18 Heat of formation + Delta-G solvation = -17.751228 kcal Electronic energy + Delta-G solvation = -25793.846613 eV Core-core repulsion = 22075.497066 eV Total energy + Delta-G solvation = -3718.349547 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -47.25659 -41.39345 -38.57646 -36.76608 -34.38134 -33.98145 -33.37583 -29.87885 -28.96192 -27.43876 -27.09074 -25.81989 -25.33667 -22.27497 -21.66692 -20.73647 -20.24451 -19.34466 -17.64643 -16.82991 -16.39458 -16.11246 -15.71108 -15.51633 -15.13929 -14.90407 -14.56580 -14.32396 -14.00910 -13.35710 -13.02052 -12.90755 -12.67564 -12.59898 -12.22287 -12.11182 -11.96556 -11.82194 -11.72551 -11.67098 -11.27775 -11.09419 -11.04219 -10.77545 -10.64877 -10.55348 -10.50785 -10.33697 -10.04820 -9.78026 -9.38306 -9.04792 -8.34482 -7.64757 -7.05461 -6.85679 -4.50860 2.31535 2.66219 2.90502 3.01129 3.04815 3.12040 3.48013 3.85046 3.93800 4.40770 4.47039 4.75543 4.98411 5.04619 5.20678 5.28768 5.35289 5.41373 5.57810 5.67995 5.74237 5.81010 5.87384 5.89895 6.00670 6.04330 6.07286 6.13463 6.23222 6.41743 6.47656 6.55759 6.67741 6.78411 6.81331 7.05036 7.05949 7.40623 7.48934 7.57563 7.81070 7.87928 8.09182 8.37684 8.57922 8.64799 8.74231 10.05043 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.016877 B = 0.004335 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.686761 B = 6457.414297 C = 7246.533668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.018 3.982 3 C -0.150 4.150 4 N -0.449 5.449 5 C 0.000 4.000 6 C -0.127 4.127 7 C 0.005 3.995 8 H 0.112 0.888 9 C 0.512 3.488 10 O -0.522 6.522 11 N -0.662 5.662 12 C 0.138 3.862 13 C -0.200 4.200 14 C -0.115 4.115 15 C -0.028 4.028 16 F -0.162 7.162 17 C 0.100 3.900 18 C -0.457 4.457 19 H 0.084 0.916 20 C 0.078 3.922 21 N -0.790 5.790 22 Si 0.910 3.090 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.259 1.259 26 C -0.159 4.159 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.402 0.598 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.283 0.717 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.375 -7.480 8.776 12.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.090 4.090 3 C -0.208 4.208 4 N -0.172 5.172 5 C -0.128 4.128 6 C -0.165 4.165 7 C -0.108 4.108 8 H 0.130 0.870 9 C 0.299 3.701 10 O -0.398 6.398 11 N -0.306 5.306 12 C 0.046 3.954 13 C -0.221 4.221 14 C -0.134 4.134 15 C -0.049 4.049 16 F -0.141 7.141 17 C 0.096 3.904 18 C -0.486 4.486 19 H 0.102 0.898 20 C -0.140 4.140 21 N -0.415 5.415 22 Si 0.734 3.266 23 H -0.193 1.193 24 H -0.200 1.200 25 H -0.183 1.183 26 C -0.181 4.181 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.236 0.764 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.093 0.907 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.347 -7.391 8.636 13.019 hybrid contribution 0.978 0.980 -0.397 1.440 sum -5.368 -6.412 8.239 11.739 Atomic orbital electron populations 1.21675 0.94536 1.01270 1.01556 1.22627 0.95869 0.96104 0.94366 1.22026 1.01662 0.95199 1.01921 1.68884 1.09281 1.04734 1.34346 1.23999 0.96899 0.91225 1.00714 1.23226 0.98476 0.93162 1.01625 1.23352 0.91632 0.99862 0.95957 0.87029 1.20495 0.80516 0.78472 0.90660 1.90630 1.64291 1.51831 1.33072 1.43475 1.26240 1.52076 1.08799 1.17540 0.98261 0.93756 0.85852 1.20119 1.08790 0.98968 0.94240 1.20397 1.00659 0.94780 0.97589 1.17934 1.08095 0.95941 0.82901 1.91275 1.82838 1.93698 1.46332 1.17335 0.91308 0.92461 0.89310 1.19446 1.15148 0.91109 1.22938 0.89799 1.25882 0.94118 1.00966 0.93059 1.69815 1.12946 1.32819 1.25911 0.86268 0.81173 0.80562 0.78570 1.19326 1.19998 1.18282 1.20822 1.06397 0.92623 0.98259 0.92531 0.92513 0.93159 0.88737 0.91853 0.91959 0.92637 0.89854 0.89601 0.90619 0.88396 0.76352 0.87255 0.87768 0.90657 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 9.49 37.16 0.35 -1.32 16 2 C 0.02 0.27 2.01 -67.71 -0.14 0.14 16 3 C -0.15 -2.43 8.56 37.16 0.32 -2.12 16 4 N -0.45 -5.97 6.02 -224.12 -1.35 -7.32 16 5 C 0.00 0.00 7.58 -2.77 -0.02 -0.02 16 6 C -0.13 -1.34 7.87 -25.80 -0.20 -1.54 16 7 C 0.00 0.06 4.00 -67.81 -0.27 -0.21 16 8 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 9 C 0.51 8.45 3.88 -10.98 -0.04 8.41 16 10 O -0.52 -10.17 10.29 5.56 0.06 -10.12 16 11 N -0.66 -11.41 5.03 -9.90 -0.05 -11.46 16 12 C 0.14 2.99 6.19 -83.74 -0.52 2.48 16 13 C -0.20 -4.48 8.67 -39.11 -0.34 -4.82 16 14 C -0.11 -2.65 10.00 -39.62 -0.40 -3.05 16 15 C -0.03 -0.72 7.31 -38.62 -0.28 -1.00 16 16 F -0.16 -4.12 16.75 2.25 0.04 -4.08 16 17 C 0.10 2.61 5.53 -106.78 -0.59 2.02 16 18 C -0.46 -11.98 8.73 -37.79 -0.33 -12.31 16 19 H 0.08 2.18 7.79 -52.49 -0.41 1.77 16 20 C 0.08 1.90 5.12 -17.34 -0.09 1.81 16 21 N -0.79 -19.57 11.19 55.55 0.62 -18.95 16 22 Si 0.91 18.14 29.59 -169.99 -5.03 13.11 16 23 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 24 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 25 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 26 C -0.16 -3.84 8.58 -38.71 -0.33 -4.17 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.10 1.65 4.92 -51.93 -0.26 1.39 16 31 H 0.06 1.14 4.54 -51.93 -0.24 0.90 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.12 6.73 -51.93 -0.35 0.77 16 35 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 36 H 0.08 0.81 8.09 -51.93 -0.42 0.38 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.40 5.65 8.83 -40.82 -0.36 5.29 16 39 H 0.11 2.37 6.61 -52.49 -0.35 2.02 16 40 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 41 H 0.28 6.36 8.30 -40.82 -0.34 6.03 16 42 H 0.12 3.01 6.43 -52.48 -0.34 2.67 16 LS Contribution 339.12 15.07 5.11 5.11 Total: -1.00 -28.48 339.12 -9.14 -37.62 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -5.65 Total: 11.78 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -2.88 Total: -15.69 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: -0.78 Total: -37.73 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.06 Total: -10.12 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.04 Total: -4.08 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.48 -9.14 -37.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182862228.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.866 kcal (2) G-P(sol) polarization free energy of solvation -28.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds