Wall clock time and date at job start Tue Mar 31 2020 09:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99953 * 2 1 4 4 H 1.08993 * 110.77966 * 26.76344 * 3 2 1 5 5 C 1.54325 * 110.72114 * 263.52022 * 3 2 1 6 6 N 1.47015 * 107.27065 * 219.44659 * 5 3 2 7 7 C 1.36938 * 125.64814 * 178.89803 * 6 5 3 8 8 H 1.08000 * 120.00310 * 180.02562 * 7 6 5 9 9 C 1.38811 * 119.99850 * 0.02562 * 7 6 5 10 10 N 1.31617 * 120.00230 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00130 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46965 * 60.00110 * 11 9 7 13 13 H 1.48496 * 109.47162 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47016 * 300.00689 * 11 9 7 15 15 C 1.47425 * 108.70882 * 358.94051 * 6 5 3 16 16 C 1.54918 * 104.82827 * 24.12597 * 15 6 5 17 17 H 1.09000 * 110.99891 * 81.06585 * 16 15 6 18 18 N 1.46495 * 111.00632 * 204.91527 * 16 15 6 19 19 C 1.34777 * 120.00234 * 267.20315 * 18 16 15 20 20 O 1.21277 * 120.00065 * 359.97438 * 19 18 16 21 21 C 1.50698 * 119.99842 * 180.02562 * 19 18 16 22 22 C 1.53002 * 109.47069 * 299.99370 * 21 19 18 23 23 C 1.52996 * 109.47614 * 59.99462 * 21 19 18 24 24 C 1.53004 * 109.46977 * 179.97438 * 21 19 18 25 25 F 1.39899 * 109.47130 * 180.02562 * 24 21 19 26 26 F 1.39896 * 109.47151 * 299.99825 * 24 21 19 27 27 H 1.08996 * 109.47227 * 300.00323 * 1 2 3 28 28 H 1.09002 * 109.46957 * 59.99904 * 1 2 3 29 29 H 1.09003 * 109.46811 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.88274 * 338.86499 * 5 3 2 31 31 H 1.08997 * 109.87805 * 99.87039 * 5 3 2 32 32 H 0.96995 * 120.00366 * 179.97438 * 10 9 7 33 33 H 1.08999 * 110.36633 * 265.29871 * 15 6 5 34 34 H 1.08996 * 110.37033 * 142.96251 * 15 6 5 35 35 H 0.97000 * 119.99509 * 87.19464 * 18 16 15 36 36 H 1.09000 * 109.46822 * 60.00379 * 22 21 19 37 37 H 1.09001 * 109.47080 * 180.02562 * 22 21 19 38 38 H 1.09001 * 109.47442 * 300.00451 * 22 21 19 39 39 H 1.09000 * 109.46913 * 59.99877 * 23 21 19 40 40 H 1.09001 * 109.47243 * 179.97438 * 23 21 19 41 41 H 1.09000 * 109.47261 * 300.00224 * 23 21 19 42 42 H 1.09001 * 109.47031 * 59.99857 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3363 2.0288 0.4589 5 6 2.3811 1.7380 -1.4342 6 7 3.6685 2.4438 -1.3580 7 6 4.3548 2.9690 -2.4203 8 1 5.2974 3.4710 -2.2593 9 6 3.8391 2.8560 -3.7041 10 7 2.6901 2.2446 -3.9003 11 14 4.7756 3.5717 -5.1533 12 1 6.1112 2.9292 -5.2455 13 1 4.0175 3.3207 -6.4052 14 1 4.9424 5.0348 -4.9610 15 6 4.0989 2.4918 0.0512 16 6 3.3816 1.2957 0.7257 17 1 3.9158 0.3641 0.5390 18 7 3.2168 1.5251 2.1631 19 6 4.1463 1.0738 3.0285 20 8 5.1190 0.4775 2.6173 21 6 3.9763 1.3093 4.5073 22 6 3.9162 2.8135 4.7806 23 6 2.6789 0.6524 4.9826 24 6 5.1612 0.7006 5.2601 25 9 5.0032 0.9187 6.6329 26 9 5.2157 -0.6747 5.0101 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 2.4769 0.8601 -2.0731 31 1 1.6140 2.4030 -1.8308 32 1 2.3295 2.1660 -4.7973 33 1 3.7872 3.4294 0.5113 34 1 5.1802 2.3744 0.1219 35 1 2.4387 2.0018 2.4921 36 1 3.0719 3.2467 4.2443 37 1 3.7938 2.9838 5.8502 38 1 4.8406 3.2816 4.4420 39 1 2.7218 -0.4192 4.7879 40 1 2.5563 0.8223 6.0523 41 1 1.8346 1.0856 4.4464 42 1 6.0857 1.1684 4.9215 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213416794.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:09 Heat of formation + Delta-G solvation = -158.600652 kcal Electronic energy + Delta-G solvation = -26768.788102 eV Core-core repulsion = 22613.561642 eV Total energy + Delta-G solvation = -4155.226461 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.154 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.07595 -47.00955 -40.17143 -38.32781 -35.99555 -35.41601 -34.07422 -31.72151 -28.83562 -27.80995 -27.24720 -26.50049 -26.15021 -24.48881 -22.83425 -20.60085 -20.41355 -19.66001 -18.09625 -17.36694 -17.18775 -16.79431 -16.46094 -15.91565 -15.48310 -14.95192 -14.78655 -14.54584 -14.28852 -14.12621 -13.76301 -13.54586 -13.36896 -13.29731 -13.07148 -12.79819 -12.53880 -12.49802 -12.34268 -12.25453 -11.92949 -11.68122 -11.53377 -11.27656 -11.04686 -10.86857 -10.82273 -10.77754 -10.21173 -10.04849 -9.83557 -9.76905 -9.20150 -8.81555 -8.61655 -6.92733 -5.76102 -3.11575 2.58520 2.96093 3.39546 3.43871 3.44958 3.53425 4.04199 4.09386 4.23540 4.24955 4.48802 4.66986 4.87988 5.00920 5.08007 5.21059 5.32820 5.34934 5.36210 5.43125 5.45169 5.53120 5.59723 5.65803 5.73146 5.80559 5.81750 5.88494 5.99418 6.10252 6.43239 6.55538 6.76845 7.21065 7.43736 7.51870 7.67562 7.82883 8.16015 8.21973 9.14293 9.74463 10.37088 11.35164 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.020099 B = 0.003779 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.755005 B = 7408.038422 C = 8228.610295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.056 3.944 4 H 0.063 0.937 5 C 0.165 3.835 6 N -0.600 5.600 7 C -0.231 4.231 8 H 0.080 0.920 9 C -0.005 4.005 10 N -0.922 5.922 11 Si 0.915 3.085 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.285 1.285 15 C 0.131 3.869 16 C 0.131 3.869 17 H 0.108 0.892 18 N -0.707 5.707 19 C 0.527 3.473 20 O -0.527 6.527 21 C -0.135 4.135 22 C -0.143 4.143 23 C -0.144 4.144 24 C 0.286 3.714 25 F -0.204 7.204 26 F -0.192 7.192 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.254 0.746 33 H 0.023 0.977 34 H 0.050 0.950 35 H 0.396 0.604 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.688 -0.112 18.720 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.295 6.295 3 C -0.003 4.003 4 H 0.081 0.919 5 C 0.040 3.960 6 N -0.327 5.327 7 C -0.359 4.359 8 H 0.098 0.902 9 C -0.202 4.202 10 N -0.569 5.569 11 Si 0.745 3.255 12 H -0.210 1.210 13 H -0.215 1.215 14 H -0.211 1.211 15 C 0.004 3.996 16 C 0.026 3.974 17 H 0.126 0.874 18 N -0.357 5.357 19 C 0.312 3.688 20 O -0.402 6.402 21 C -0.140 4.140 22 C -0.200 4.200 23 C -0.202 4.202 24 C 0.232 3.768 25 F -0.185 7.185 26 F -0.173 7.173 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.231 0.769 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.912 -0.742 18.182 18.428 hybrid contribution -0.275 0.729 -0.585 0.975 sum -3.187 -0.013 17.596 17.883 Atomic orbital electron populations 1.22711 0.81724 1.02103 0.99708 1.87923 1.19084 1.27478 1.95029 1.23846 0.92861 0.84116 0.99514 0.91948 1.21555 0.88230 0.97293 0.88951 1.44235 1.21361 1.66524 1.00614 1.19024 1.02383 1.29825 0.84694 0.90186 1.24813 0.97378 1.00577 0.97397 1.69921 1.19129 1.47086 1.20788 0.86158 0.78913 0.78662 0.81772 1.21015 1.21547 1.21126 1.21815 0.97753 0.93716 0.86331 1.22476 0.96619 1.01278 0.77068 0.87358 1.45829 1.24734 1.58025 1.07139 1.19835 0.83234 0.78894 0.86876 1.90779 1.29823 1.40461 1.79167 1.21892 0.98027 0.99816 0.94222 1.21861 1.03973 0.90580 1.03619 1.21852 0.94100 1.01710 1.02500 1.21465 0.99929 0.78823 0.76568 1.92956 1.97075 1.94619 1.33866 1.93006 1.97540 1.32915 1.93826 0.94880 0.93628 0.90205 0.91923 0.93326 0.93570 0.95945 0.93173 0.76948 0.90578 0.90387 0.91083 0.91044 0.90591 0.90911 0.86655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.85 101.05 1.10 1.57 16 2 O -0.38 -6.80 10.43 -35.23 -0.37 -7.17 16 3 C 0.06 1.02 3.09 -24.90 -0.08 0.94 16 4 H 0.06 0.99 7.69 -51.93 -0.40 0.59 16 5 C 0.17 3.93 5.15 -3.07 -0.02 3.92 16 6 N -0.60 -15.14 3.39 -170.07 -0.58 -15.71 16 7 C -0.23 -6.40 10.28 -15.06 -0.15 -6.55 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 10 N -0.92 -26.68 10.31 55.49 0.57 -26.10 16 11 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 C 0.13 2.71 6.93 -2.52 -0.02 2.69 16 16 C 0.13 2.37 3.15 -65.78 -0.21 2.16 16 17 H 0.11 2.29 7.54 -51.93 -0.39 1.90 16 18 N -0.71 -9.71 4.98 -51.73 -0.26 -9.97 16 19 C 0.53 7.49 6.36 -10.99 -0.07 7.42 16 20 O -0.53 -9.73 15.05 5.56 0.08 -9.64 16 21 C -0.14 -1.39 0.58 -155.66 -0.09 -1.48 16 22 C -0.14 -1.08 8.25 37.16 0.31 -0.78 16 23 C -0.14 -1.27 8.13 37.16 0.30 -0.97 16 24 C 0.29 3.22 3.79 37.16 0.14 3.36 16 25 F -0.20 -2.17 16.30 2.25 0.04 -2.13 16 26 F -0.19 -2.73 15.90 2.25 0.04 -2.70 16 27 H 0.03 0.37 8.11 -51.93 -0.42 -0.05 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 1.71 7.30 -51.93 -0.38 1.33 16 31 H 0.05 1.25 7.51 -51.93 -0.39 0.86 16 32 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.40 4.20 7.40 -40.82 -0.30 3.89 16 36 H 0.08 0.49 7.56 -51.93 -0.39 0.10 16 37 H 0.08 0.49 7.80 -51.93 -0.41 0.09 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.74 7.80 -51.93 -0.41 0.33 16 40 H 0.08 0.57 7.80 -51.93 -0.41 0.17 16 41 H 0.07 0.53 7.57 -51.93 -0.39 0.13 16 42 H 0.12 1.17 8.10 -51.93 -0.42 0.75 16 LS Contribution 348.30 15.07 5.25 5.25 Total: -1.00 -32.78 348.30 -5.50 -38.27 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.36 Total: 0.95 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 1.12 Total: 12.05 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.26 Total: -51.78 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.28 Total: -16.81 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.07 Total: -4.83 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.78 -5.50 -38.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213416794.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.329 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds