Wall clock time and date at job start Tue Mar 31 2020 08:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46969 * 2 1 4 4 C 1.52998 * 109.47092 * 239.99928 * 2 1 3 5 5 C 1.53002 * 109.47237 * 60.00261 * 4 2 1 6 6 F 1.39898 * 109.47255 * 64.99631 * 5 4 2 7 7 F 1.39896 * 109.47345 * 184.99847 * 5 4 2 8 8 C 1.50695 * 109.47260 * 120.00033 * 2 1 3 9 9 O 1.21283 * 120.00150 * 119.99963 * 8 2 1 10 10 N 1.34773 * 120.00115 * 300.00495 * 8 2 1 11 11 C 1.46509 * 120.00272 * 180.02562 * 10 8 2 12 12 H 1.09004 * 110.91289 * 31.09727 * 11 10 8 13 13 C 1.55127 * 111.19117 * 267.18346 * 11 10 8 14 14 N 1.47418 * 104.72186 * 279.19306 * 13 11 10 15 15 C 1.36939 * 125.65334 * 155.82231 * 14 13 11 16 16 H 1.08001 * 119.99516 * 333.54881 * 15 14 13 17 17 C 1.38806 * 120.00489 * 153.54341 * 15 14 13 18 18 N 1.31619 * 119.99753 * 145.67443 * 17 15 14 19 19 Si 1.86800 * 120.00032 * 325.67545 * 17 15 14 20 20 H 1.48497 * 109.47381 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46900 * 239.99437 * 19 17 15 22 22 H 1.48500 * 109.46916 * 120.00043 * 19 17 15 23 23 C 1.47022 * 108.70486 * 335.55029 * 14 13 11 24 24 C 1.54331 * 107.26971 * 1.29074 * 23 14 13 25 25 H 1.09000 * 110.71684 * 263.65109 * 24 23 14 26 26 O 1.42893 * 110.71908 * 140.55352 * 24 23 14 27 27 H 1.09004 * 109.47520 * 299.99648 * 1 2 3 28 28 H 1.09001 * 109.47294 * 60.00435 * 1 2 3 29 29 H 1.09007 * 109.47221 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46793 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47253 * 300.00079 * 3 2 1 32 32 H 1.08997 * 109.47068 * 59.99982 * 3 2 1 33 33 H 1.08999 * 109.47533 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.47469 * 299.99904 * 4 2 1 35 35 H 1.09011 * 109.46852 * 304.99927 * 5 4 2 36 36 H 0.97002 * 120.00396 * 359.97438 * 10 8 2 37 37 H 1.09000 * 110.49514 * 160.34783 * 13 11 10 38 38 H 1.09007 * 110.34161 * 37.95326 * 13 11 10 39 39 H 0.96994 * 120.00437 * 5.06273 * 18 17 15 40 40 H 1.08994 * 109.88474 * 120.70570 * 23 14 13 41 41 H 1.09001 * 109.88559 * 241.71934 * 23 14 13 42 42 H 0.96701 * 114.00161 * 61.46217 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5300 0.0000 -2.4985 6 9 2.0878 1.2816 -2.5574 7 9 1.9001 -0.7225 -3.6379 8 6 2.0323 -0.7104 1.2304 9 8 2.7296 -1.6965 1.1191 10 7 1.7067 -0.2500 2.4545 11 6 2.1955 -0.9403 3.6507 12 1 3.1658 -1.4009 3.4650 13 6 1.1700 -1.9918 4.1499 14 7 0.1758 -1.2136 4.9109 15 6 -1.1214 -1.5858 5.1432 16 1 -1.6248 -2.2479 4.4541 17 6 -1.7893 -1.1125 6.2641 18 7 -3.0800 -0.8617 6.2040 19 14 -0.8564 -0.8313 7.8578 20 1 0.5723 -1.1870 7.6645 21 1 -1.4373 -1.6814 8.9280 22 1 -0.9629 0.5975 8.2482 23 6 0.8095 0.0255 5.3850 24 6 2.2617 0.0263 4.8626 25 1 2.9453 -0.3508 5.6233 26 8 2.6475 1.3368 4.4436 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1299 -0.7209 -1.2495 34 1 1.6766 -1.7490 -1.2492 35 1 0.4436 0.0782 -2.4548 36 1 1.1492 0.5388 2.5436 37 1 1.6562 -2.7220 4.7967 38 1 0.6954 -2.4894 3.3041 39 1 -3.5789 -1.0764 5.4004 40 1 0.2738 0.8896 4.9922 41 1 0.8051 0.0508 6.4747 42 1 2.6296 1.9968 5.1501 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219786932.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:04 Heat of formation + Delta-G solvation = -165.816311 kcal Electronic energy + Delta-G solvation = -26902.056234 eV Core-core repulsion = 22746.516879 eV Total energy + Delta-G solvation = -4155.539355 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.154 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.20193 -47.19648 -40.25231 -38.40958 -35.97940 -35.34019 -33.85763 -32.04533 -29.74850 -28.58017 -27.63025 -27.52748 -24.74403 -23.94060 -22.35353 -20.78418 -20.06942 -19.36996 -18.03511 -17.68477 -17.54872 -17.06930 -16.58000 -16.06008 -15.91839 -15.20418 -15.03248 -14.53985 -14.20045 -13.90295 -13.82071 -13.78557 -13.73087 -13.38972 -13.07181 -13.00443 -12.72038 -12.47674 -12.28230 -11.91047 -11.81163 -11.65584 -11.36980 -11.26569 -11.15845 -11.13517 -10.95810 -10.92162 -10.55833 -10.01773 -9.56660 -9.51504 -9.39334 -8.82609 -8.32053 -7.18444 -6.41088 -3.36719 2.79933 3.19153 3.34396 3.44376 3.56324 3.72324 4.06339 4.17419 4.25559 4.39483 4.48910 4.71621 4.75663 4.81176 4.84456 5.04849 5.11765 5.17344 5.39691 5.41983 5.45122 5.52931 5.56934 5.65258 5.73271 5.82419 5.83452 5.96301 6.06390 6.12461 6.21023 6.44895 6.49541 6.52879 6.84723 7.71985 7.73663 7.81664 8.27152 8.42637 8.90623 9.48916 10.21396 10.95752 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.022751 B = 0.003833 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.427964 B = 7303.497349 C = 7715.603771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.078 4.078 3 C -0.160 4.160 4 C -0.146 4.146 5 C 0.259 3.741 6 F -0.201 7.201 7 F -0.207 7.207 8 C 0.527 3.473 9 O -0.551 6.551 10 N -0.688 5.688 11 C 0.142 3.858 12 H 0.097 0.903 13 C 0.116 3.884 14 N -0.595 5.595 15 C -0.343 4.343 16 H 0.068 0.932 17 C -0.004 4.004 18 N -0.900 5.900 19 Si 1.049 2.951 20 H -0.281 1.281 21 H -0.296 1.296 22 H -0.293 1.293 23 C 0.093 3.907 24 C 0.081 3.919 25 H 0.075 0.925 26 O -0.559 6.559 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.406 0.594 37 H 0.034 0.966 38 H 0.052 0.948 39 H 0.267 0.733 40 H 0.044 0.956 41 H 0.034 0.966 42 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.895 5.558 -11.870 16.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 C -0.217 4.217 4 C -0.184 4.184 5 C 0.205 3.795 6 F -0.182 7.182 7 F -0.188 7.188 8 C 0.313 3.687 9 O -0.430 6.430 10 N -0.337 5.337 11 C 0.035 3.965 12 H 0.115 0.885 13 C -0.010 4.010 14 N -0.324 5.324 15 C -0.470 4.470 16 H 0.085 0.915 17 C -0.208 4.208 18 N -0.538 5.538 19 Si 0.880 3.120 20 H -0.208 1.208 21 H -0.224 1.224 22 H -0.220 1.220 23 C -0.033 4.033 24 C 0.020 3.980 25 H 0.093 0.907 26 O -0.364 6.364 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.131 0.869 36 H 0.241 0.759 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 10.214 5.094 -10.985 15.841 hybrid contribution -0.154 -0.024 -0.747 0.763 sum 10.060 5.070 -11.732 16.265 Atomic orbital electron populations 1.22007 0.91930 1.03449 1.03324 1.20655 0.97574 0.97122 0.92799 1.22301 1.02030 0.93118 1.04251 1.22463 1.04177 1.00883 0.90910 1.22081 0.98331 0.75387 0.83654 1.92892 1.88108 1.40863 1.96328 1.92981 1.93767 1.78161 1.53937 1.20162 0.79985 0.84180 0.84422 1.90675 1.38855 1.26587 1.86836 1.45456 1.52346 1.31502 1.04381 1.22217 0.98339 0.92677 0.83226 0.88471 1.22178 0.90324 0.92894 0.95621 1.44538 1.08578 1.15769 1.63498 1.19760 0.85409 1.34638 1.07198 0.91458 1.26055 0.96787 0.97601 1.00360 1.70914 1.09256 1.40263 1.33322 0.84032 0.75164 0.76252 0.76523 1.20752 1.22402 1.21988 1.22335 0.91235 0.91731 0.97951 1.23197 0.95820 0.83223 0.95710 0.90699 1.86456 1.90684 1.18977 1.40257 0.90796 0.91577 0.91374 0.91944 0.89400 0.91700 0.88671 0.87928 0.86908 0.75855 0.94873 0.92924 0.92288 0.93789 0.94888 0.77475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.02 37.16 0.30 -1.27 16 2 C -0.08 -0.90 0.64 -155.67 -0.10 -1.00 16 3 C -0.16 -1.66 7.62 37.16 0.28 -1.38 16 4 C -0.15 -1.59 3.89 -26.73 -0.10 -1.69 16 5 C 0.26 2.43 4.96 37.16 0.18 2.62 16 6 F -0.20 -2.08 13.99 2.25 0.03 -2.05 16 7 F -0.21 -2.30 17.34 2.25 0.04 -2.26 16 8 C 0.53 8.09 6.48 -10.99 -0.07 8.02 16 9 O -0.55 -10.13 15.62 5.55 0.09 -10.05 16 10 N -0.69 -10.77 4.60 -51.61 -0.24 -11.01 16 11 C 0.14 2.40 3.31 -65.66 -0.22 2.18 16 12 H 0.10 1.63 7.54 -51.93 -0.39 1.24 16 13 C 0.12 2.33 6.95 -2.41 -0.02 2.31 16 14 N -0.60 -13.70 3.05 -169.94 -0.52 -14.22 16 15 C -0.34 -9.33 10.24 -15.06 -0.15 -9.49 16 16 H 0.07 1.98 8.06 -52.49 -0.42 1.55 16 17 C 0.00 -0.11 5.29 -17.43 -0.09 -0.20 16 18 N -0.90 -26.74 13.70 55.49 0.76 -25.98 16 19 Si 1.05 24.96 26.21 -169.99 -4.46 20.51 16 20 H -0.28 -6.24 6.18 56.52 0.35 -5.89 16 21 H -0.30 -7.11 7.11 56.52 0.40 -6.70 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.09 1.84 5.80 -3.06 -0.02 1.82 16 24 C 0.08 1.27 4.12 -24.89 -0.10 1.16 16 25 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 26 O -0.56 -7.52 12.67 -35.23 -0.45 -7.97 16 27 H 0.07 0.84 7.57 -51.93 -0.39 0.45 16 28 H 0.07 0.52 6.32 -51.93 -0.33 0.19 16 29 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.82 5.39 -51.93 -0.28 0.54 16 32 H 0.06 0.67 7.56 -51.93 -0.39 0.27 16 33 H 0.09 1.13 8.10 -51.93 -0.42 0.71 16 34 H 0.10 1.14 8.10 -51.93 -0.42 0.72 16 35 H 0.11 0.78 6.17 -51.92 -0.32 0.46 16 36 H 0.41 6.14 7.22 -40.82 -0.29 5.85 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.27 7.86 8.73 -40.82 -0.36 7.50 16 40 H 0.04 0.90 8.06 -51.93 -0.42 0.48 16 41 H 0.03 0.69 3.84 -51.93 -0.20 0.49 16 42 H 0.38 3.56 9.11 45.56 0.42 3.97 16 LS Contribution 337.41 15.07 5.08 5.08 Total: -1.00 -32.28 337.41 -4.95 -37.23 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -5.19 Total: 7.63 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -0.11 Total: 3.09 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.00 Total: -51.20 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.36 Total: -18.02 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.07 Total: -4.32 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -4.46 Total: 20.51 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.28 -4.95 -37.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219786932.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.583 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds