Wall clock time and date at job start Tue Mar 31 2020 08:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46969 * 2 1 4 4 C 1.52998 * 109.47092 * 239.99928 * 2 1 3 5 5 C 1.53002 * 109.47237 * 60.00261 * 4 2 1 6 6 F 1.39898 * 109.47255 * 64.99631 * 5 4 2 7 7 F 1.39896 * 109.47345 * 184.99847 * 5 4 2 8 8 C 1.50695 * 109.47260 * 120.00033 * 2 1 3 9 9 O 1.21283 * 120.00150 * 119.99963 * 8 2 1 10 10 N 1.34773 * 120.00115 * 300.00495 * 8 2 1 11 11 C 1.46509 * 120.00272 * 180.02562 * 10 8 2 12 12 H 1.09004 * 110.91289 * 31.09727 * 11 10 8 13 13 C 1.55127 * 111.19117 * 267.18346 * 11 10 8 14 14 N 1.47418 * 104.72186 * 279.19306 * 13 11 10 15 15 C 1.36939 * 125.65334 * 155.82231 * 14 13 11 16 16 H 1.08001 * 119.99516 * 333.54881 * 15 14 13 17 17 C 1.38806 * 120.00489 * 153.54341 * 15 14 13 18 18 N 1.31619 * 119.99753 * 145.67443 * 17 15 14 19 19 Si 1.86800 * 120.00032 * 325.67545 * 17 15 14 20 20 H 1.48497 * 109.47381 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46900 * 239.99437 * 19 17 15 22 22 H 1.48500 * 109.46916 * 120.00043 * 19 17 15 23 23 C 1.47022 * 108.70486 * 335.55029 * 14 13 11 24 24 C 1.54331 * 107.26971 * 1.29074 * 23 14 13 25 25 H 1.09000 * 110.71684 * 263.65109 * 24 23 14 26 26 O 1.42893 * 110.71908 * 140.55352 * 24 23 14 27 27 H 1.09004 * 109.47520 * 299.99648 * 1 2 3 28 28 H 1.09001 * 109.47294 * 60.00435 * 1 2 3 29 29 H 1.09007 * 109.47221 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46793 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47253 * 300.00079 * 3 2 1 32 32 H 1.08997 * 109.47068 * 59.99982 * 3 2 1 33 33 H 1.08999 * 109.47533 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.47469 * 299.99904 * 4 2 1 35 35 H 1.09011 * 109.46852 * 304.99927 * 5 4 2 36 36 H 0.97002 * 120.00396 * 359.97438 * 10 8 2 37 37 H 1.09000 * 110.49514 * 160.34783 * 13 11 10 38 38 H 1.09007 * 110.34161 * 37.95326 * 13 11 10 39 39 H 0.96994 * 120.00437 * 5.06273 * 18 17 15 40 40 H 1.08994 * 109.88474 * 120.70570 * 23 14 13 41 41 H 1.09001 * 109.88559 * 241.71934 * 23 14 13 42 42 H 0.96701 * 114.00161 * 61.46217 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5300 0.0000 -2.4985 6 9 2.0878 1.2816 -2.5574 7 9 1.9001 -0.7225 -3.6379 8 6 2.0323 -0.7104 1.2304 9 8 2.7296 -1.6965 1.1191 10 7 1.7067 -0.2500 2.4545 11 6 2.1955 -0.9403 3.6507 12 1 3.1658 -1.4009 3.4650 13 6 1.1700 -1.9918 4.1499 14 7 0.1758 -1.2136 4.9109 15 6 -1.1214 -1.5858 5.1432 16 1 -1.6248 -2.2479 4.4541 17 6 -1.7893 -1.1125 6.2641 18 7 -3.0800 -0.8617 6.2040 19 14 -0.8564 -0.8313 7.8578 20 1 0.5723 -1.1870 7.6645 21 1 -1.4373 -1.6814 8.9280 22 1 -0.9629 0.5975 8.2482 23 6 0.8095 0.0255 5.3850 24 6 2.2617 0.0263 4.8626 25 1 2.9453 -0.3508 5.6233 26 8 2.6475 1.3368 4.4436 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1299 -0.7209 -1.2495 34 1 1.6766 -1.7490 -1.2492 35 1 0.4436 0.0782 -2.4548 36 1 1.1492 0.5388 2.5436 37 1 1.6562 -2.7220 4.7967 38 1 0.6954 -2.4894 3.3041 39 1 -3.5789 -1.0764 5.4004 40 1 0.2738 0.8896 4.9922 41 1 0.8051 0.0508 6.4747 42 1 2.6296 1.9968 5.1501 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219786932.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:03 Heat of formation + Delta-G solvation = -190.642232 kcal Electronic energy + Delta-G solvation = -26903.132767 eV Core-core repulsion = 22746.516879 eV Total energy + Delta-G solvation = -4156.615888 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.154 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.00331 -48.00843 -41.49151 -39.76834 -37.03904 -36.72042 -35.37491 -33.91749 -30.93511 -29.93282 -29.13790 -28.38063 -26.02961 -25.37808 -23.47031 -22.44320 -21.46116 -20.54595 -19.65064 -18.83873 -18.44188 -18.27631 -17.69293 -17.23012 -17.12631 -16.57222 -16.19037 -15.99490 -15.52217 -15.10255 -15.08673 -14.86667 -14.70489 -14.65042 -14.53156 -14.27828 -13.86619 -13.73241 -13.36979 -13.26194 -13.14752 -12.79106 -12.78349 -12.70258 -12.51807 -12.15842 -12.06854 -12.01207 -11.79254 -11.70744 -11.30552 -10.97391 -10.71005 -10.51678 -10.07299 -9.18060 -8.55852 -5.50320 1.43375 1.55198 1.57731 1.71801 2.05692 2.51032 2.88202 2.92530 3.06967 3.24963 3.31884 3.44730 3.55609 3.67041 3.73357 3.77750 3.91617 3.95640 4.17650 4.19209 4.45297 4.48743 4.61021 4.66079 4.66858 4.74156 4.81719 4.85125 4.88892 4.89633 4.96742 5.01702 5.20480 5.29676 5.49412 5.70304 6.13613 6.52833 6.79804 6.83567 7.19079 7.45616 8.17439 8.76146 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.022751 B = 0.003833 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.427964 B = 7303.497349 C = 7715.603771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.070 4.070 3 C -0.154 4.154 4 C -0.144 4.144 5 C 0.263 3.737 6 F -0.204 7.204 7 F -0.217 7.217 8 C 0.521 3.479 9 O -0.584 6.584 10 N -0.687 5.687 11 C 0.145 3.855 12 H 0.104 0.896 13 C 0.116 3.884 14 N -0.610 5.610 15 C -0.336 4.336 16 H 0.027 0.973 17 C -0.054 4.054 18 N -0.933 5.933 19 Si 1.095 2.905 20 H -0.253 1.253 21 H -0.300 1.300 22 H -0.280 1.280 23 C 0.088 3.912 24 C 0.103 3.897 25 H 0.101 0.899 26 O -0.557 6.557 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.147 0.853 36 H 0.409 0.591 37 H 0.041 0.959 38 H 0.029 0.971 39 H 0.252 0.748 40 H 0.037 0.963 41 H 0.035 0.965 42 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.627 7.205 -11.799 18.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.073 4.073 3 C -0.211 4.211 4 C -0.183 4.183 5 C 0.210 3.790 6 F -0.186 7.186 7 F -0.198 7.198 8 C 0.309 3.691 9 O -0.465 6.465 10 N -0.336 5.336 11 C 0.039 3.961 12 H 0.122 0.878 13 C -0.010 4.010 14 N -0.339 5.339 15 C -0.464 4.464 16 H 0.045 0.955 17 C -0.252 4.252 18 N -0.573 5.573 19 Si 0.920 3.080 20 H -0.178 1.178 21 H -0.228 1.228 22 H -0.206 1.206 23 C -0.037 4.037 24 C 0.043 3.957 25 H 0.119 0.881 26 O -0.365 6.365 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.164 0.836 36 H 0.245 0.755 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 11.976 6.774 -10.931 17.573 hybrid contribution -0.700 -0.584 -0.866 1.258 sum 11.276 6.190 -11.797 17.454 Atomic orbital electron populations 1.22030 0.90920 1.03128 1.04520 1.20631 0.98184 0.97469 0.91045 1.22286 1.01559 0.92093 1.05177 1.22409 1.03414 1.00869 0.91572 1.22224 0.99739 0.74693 0.82326 1.92882 1.88384 1.41029 1.96256 1.92965 1.93993 1.78479 1.54371 1.20882 0.79183 0.83785 0.85296 1.90654 1.40375 1.28132 1.87345 1.45487 1.52317 1.31417 1.04361 1.22087 0.97286 0.92498 0.84271 0.87824 1.22216 0.90348 0.93853 0.94590 1.44515 1.07908 1.17698 1.63735 1.19554 0.87337 1.33379 1.06135 0.95506 1.27235 0.96797 0.97864 1.03298 1.71040 1.10418 1.43066 1.32824 0.83452 0.75368 0.76824 0.72386 1.17817 1.22832 1.20622 1.22503 0.93589 0.89699 0.97891 1.22933 0.93546 0.84273 0.94990 0.88120 1.86430 1.90098 1.18484 1.41493 0.91797 0.88216 0.92479 0.92643 0.87783 0.91446 0.89969 0.88527 0.83646 0.75470 0.94090 0.95282 0.93890 0.94525 0.94777 0.74946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.02 71.98 0.58 -2.31 16 2 C -0.07 -1.53 0.64 -52.93 -0.03 -1.56 16 3 C -0.15 -2.88 7.62 71.98 0.55 -2.33 16 4 C -0.14 -2.99 3.89 30.59 0.12 -2.87 16 5 C 0.26 4.38 4.96 71.98 0.36 4.73 16 6 F -0.20 -3.74 13.99 44.97 0.63 -3.11 16 7 F -0.22 -4.48 17.34 44.97 0.78 -3.70 16 8 C 0.52 15.71 6.48 87.66 0.57 16.27 16 9 O -0.58 -21.47 15.62 -3.04 -0.05 -21.52 16 10 N -0.69 -20.80 4.60 -435.59 -2.00 -22.80 16 11 C 0.15 4.68 3.31 46.46 0.15 4.83 16 12 H 0.10 3.28 7.54 -2.39 -0.02 3.26 16 13 C 0.12 4.61 6.95 86.93 0.60 5.21 16 14 N -0.61 -27.83 3.05 -691.55 -2.11 -29.94 16 15 C -0.34 -18.69 10.24 84.03 0.86 -17.83 16 16 H 0.03 1.68 8.06 -2.91 -0.02 1.65 16 17 C -0.05 -3.05 5.29 84.86 0.45 -2.60 16 18 N -0.93 -56.91 13.70 21.65 0.30 -56.61 16 19 Si 1.09 49.55 26.21 68.60 1.80 51.35 16 20 H -0.25 -10.22 6.18 99.48 0.61 -9.60 16 21 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 22 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 23 C 0.09 3.28 5.80 86.73 0.50 3.79 16 24 C 0.10 2.90 4.12 31.78 0.13 3.04 16 25 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 26 O -0.56 -12.89 12.67 -148.98 -1.89 -14.78 16 27 H 0.06 1.38 7.57 -2.39 -0.02 1.37 16 28 H 0.10 1.25 6.32 -2.39 -0.02 1.23 16 29 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.10 1.63 5.39 -2.39 -0.01 1.62 16 32 H 0.07 1.23 7.56 -2.39 -0.02 1.21 16 33 H 0.08 1.92 8.10 -2.39 -0.02 1.90 16 34 H 0.10 2.12 8.10 -2.39 -0.02 2.10 16 35 H 0.15 1.51 6.17 -2.38 -0.01 1.49 16 36 H 0.41 11.84 7.22 -92.71 -0.67 11.17 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.25 15.53 8.73 -92.71 -0.81 14.72 16 40 H 0.04 1.42 8.06 -2.39 -0.02 1.40 16 41 H 0.03 1.30 3.84 -2.39 -0.01 1.29 16 42 H 0.40 5.77 9.11 -74.06 -0.67 5.09 16 Total: -1.00 -71.55 337.41 1.88 -69.66 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: -0.41 Total: 23.07 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 4.84 Total: 8.37 kcal Atomic # 7 Polarization: -105.53 SS G_CDS: -3.82 Total: -109.35 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -1.94 Total: -36.30 kcal Atomic # 9 Polarization: -8.21 SS G_CDS: 1.41 Total: -6.81 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 1.80 Total: 51.35 kcal Total: -71.55 1.88 -69.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219786932.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.978 kcal (2) G-P(sol) polarization free energy of solvation -71.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds