Wall clock time and date at job start Tue Mar 31 2020 09:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47178 * 2 1 4 4 C 1.50703 * 109.46993 * 120.00306 * 2 1 3 5 5 O 1.21281 * 120.00392 * 119.99690 * 4 2 1 6 6 N 1.34779 * 119.99495 * 299.99604 * 4 2 1 7 7 C 1.46507 * 119.99496 * 179.97438 * 6 4 2 8 8 H 1.08994 * 110.88705 * 31.12418 * 7 6 4 9 9 C 1.55126 * 111.19219 * 267.18779 * 7 6 4 10 10 N 1.47428 * 104.72175 * 279.19191 * 9 7 6 11 11 C 1.36938 * 125.64353 * 155.82050 * 10 9 7 12 12 H 1.07999 * 120.00325 * 359.71407 * 11 10 9 13 13 C 1.38815 * 119.99817 * 179.72052 * 11 10 9 14 14 N 1.31621 * 119.99673 * 359.71804 * 13 11 10 15 15 Si 1.86795 * 120.00115 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47071 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47211 * 119.99797 * 15 13 11 18 18 H 1.48493 * 109.47327 * 239.99664 * 15 13 11 19 19 C 1.47015 * 108.70459 * 335.55516 * 10 9 7 20 20 C 1.54331 * 107.27254 * 1.28722 * 19 10 9 21 21 H 1.08999 * 110.71977 * 263.65070 * 20 19 10 22 22 O 1.42896 * 110.72196 * 140.55752 * 20 19 10 23 23 C 1.53004 * 109.47083 * 239.99913 * 2 1 3 24 24 C 1.52997 * 109.46974 * 60.00408 * 23 2 1 25 25 F 1.39903 * 109.47018 * 180.02562 * 23 2 1 26 26 F 1.39900 * 109.46772 * 300.00038 * 23 2 1 27 27 H 1.09005 * 109.47378 * 300.00369 * 1 2 3 28 28 H 1.09006 * 109.47055 * 60.00108 * 1 2 3 29 29 H 1.08998 * 109.47269 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46836 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47519 * 299.99735 * 3 2 1 32 32 H 1.09001 * 109.47432 * 60.00488 * 3 2 1 33 33 H 0.96996 * 120.00559 * 359.97438 * 6 4 2 34 34 H 1.09002 * 110.49480 * 160.35556 * 9 7 6 35 35 H 1.08994 * 110.34371 * 37.96198 * 9 7 6 36 36 H 0.97000 * 120.00043 * 180.02562 * 14 13 11 37 37 H 1.08998 * 109.88677 * 120.70326 * 19 10 9 38 38 H 1.08998 * 109.88703 * 241.87028 * 19 10 9 39 39 H 0.96699 * 114.00307 * 61.44738 * 22 20 19 40 40 H 1.08998 * 109.47265 * 59.99835 * 24 23 2 41 41 H 1.08997 * 109.46780 * 180.02562 * 24 23 2 42 42 H 1.09000 * 109.47210 * 299.99558 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7295 -1.6966 1.1192 6 7 1.7066 -0.2500 2.4546 7 6 2.1945 -0.9410 3.6508 8 1 3.1646 -1.4019 3.4648 9 6 1.1679 -1.9917 4.1493 10 7 0.1742 -1.2127 4.9104 11 6 -1.1234 -1.5840 5.1420 12 1 -1.4962 -2.5183 4.7488 13 6 -1.9597 -0.7596 5.8822 14 7 -1.5038 0.3764 6.3660 15 14 -3.7299 -1.2657 6.1976 16 1 -3.9912 -2.5787 5.5551 17 1 -3.9602 -1.3753 7.6606 18 1 -4.6456 -0.2452 5.6275 19 6 0.8088 0.0257 5.3848 20 6 2.2611 0.0254 4.8628 21 1 2.9442 -0.3524 5.6236 22 8 2.6483 1.3356 4.4442 23 6 2.0400 -0.7213 -1.2493 24 6 1.5300 0.0000 -2.4985 25 9 3.4390 -0.7218 -1.2490 26 9 1.5736 -2.0403 -1.2492 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.1494 0.5389 2.5436 34 1 1.6533 -2.7224 4.7963 35 1 0.6933 -2.4888 3.3034 36 1 -2.0880 0.9524 6.8835 37 1 0.2740 0.8904 4.9920 38 1 0.8066 0.0495 6.4745 39 1 2.6306 1.9956 5.1508 40 1 1.8934 1.0276 -2.4984 41 1 1.8930 -0.5141 -3.3884 42 1 0.4400 0.0000 -2.4985 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220864591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:53 Heat of formation + Delta-G solvation = -161.208750 kcal Electronic energy + Delta-G solvation = -27551.746156 eV Core-core repulsion = 23396.406600 eV Total energy + Delta-G solvation = -4155.339556 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.154 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.78275 -46.74436 -39.90951 -38.00231 -35.82776 -35.08766 -33.65565 -31.67802 -30.12910 -28.39910 -27.52221 -27.10774 -25.02307 -24.41965 -22.11306 -20.45139 -19.98825 -19.35310 -17.69867 -17.23506 -16.87305 -16.82524 -16.41443 -15.68856 -15.38799 -14.85518 -14.66461 -14.27822 -14.01198 -13.63415 -13.33890 -13.22707 -13.19514 -13.05814 -12.88580 -12.67929 -12.49863 -12.42924 -12.28320 -11.99533 -11.85180 -11.79300 -11.47589 -11.31189 -11.27768 -10.91488 -10.77736 -10.66986 -10.23791 -10.09805 -9.88248 -9.42631 -9.31398 -8.80885 -8.51582 -6.93669 -5.81617 -3.14883 2.90111 3.30444 3.34075 3.40818 3.42571 3.70152 4.02101 4.35543 4.37005 4.43402 4.59955 4.84271 4.84989 4.96730 5.21239 5.32928 5.38763 5.41609 5.46625 5.49480 5.56556 5.58122 5.62968 5.64635 5.73226 5.80095 6.00146 6.09924 6.12352 6.24176 6.43064 6.58908 6.98535 7.27877 7.40013 7.67711 7.89616 8.04487 8.12863 8.54992 9.11157 9.71042 10.35030 11.30308 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.017839 B = 0.004630 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.182442 B = 6046.642974 C = 6686.128651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C -0.143 4.143 4 C 0.523 3.477 5 O -0.537 6.537 6 N -0.684 5.684 7 C 0.141 3.859 8 H 0.093 0.907 9 C 0.123 3.877 10 N -0.600 5.600 11 C -0.225 4.225 12 H 0.079 0.921 13 C -0.008 4.008 14 N -0.924 5.924 15 Si 0.912 3.088 16 H -0.280 1.280 17 H -0.290 1.290 18 H -0.291 1.291 19 C 0.150 3.850 20 C 0.064 3.936 21 H 0.067 0.933 22 O -0.563 6.563 23 C 0.313 3.687 24 C -0.198 4.198 25 F -0.193 7.193 26 F -0.191 7.191 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.406 0.594 34 H 0.033 0.967 35 H 0.050 0.950 36 H 0.252 0.748 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.377 0.623 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.239 4.988 -12.822 15.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.201 4.201 4 C 0.307 3.693 5 O -0.413 6.413 6 N -0.334 5.334 7 C 0.035 3.965 8 H 0.111 0.889 9 C -0.004 4.004 10 N -0.328 5.328 11 C -0.353 4.353 12 H 0.097 0.903 13 C -0.204 4.204 14 N -0.573 5.573 15 Si 0.743 3.257 16 H -0.205 1.205 17 H -0.217 1.217 18 H -0.218 1.218 19 C 0.025 3.975 20 C 0.004 3.996 21 H 0.085 0.915 22 O -0.368 6.368 23 C 0.277 3.723 24 C -0.256 4.256 25 F -0.174 7.174 26 F -0.172 7.172 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.242 0.758 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.224 0.776 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.647 4.016 -13.341 15.437 hybrid contribution -1.248 0.260 1.007 1.624 sum 5.399 4.276 -12.334 14.127 Atomic orbital electron populations 1.21952 0.90167 1.04205 1.03970 1.21872 0.99650 0.98243 0.93087 1.21931 1.02452 0.91797 1.03899 1.19913 0.80521 0.84486 0.84367 1.90733 1.38092 1.25981 1.86543 1.45396 1.52357 1.31466 1.04163 1.22218 0.97943 0.93037 0.83325 0.88897 1.22055 0.90390 0.93041 0.94917 1.44325 1.07913 1.19177 1.61348 1.19125 0.84798 1.03404 1.27935 0.90267 1.24775 0.98496 0.96893 1.00215 1.69932 1.34697 1.12181 1.40441 0.86030 0.84379 0.77652 0.77641 1.20484 1.21738 1.21761 1.21860 0.86742 0.90723 0.98187 1.23563 0.98283 0.82718 0.95033 0.91535 1.86395 1.90799 1.19244 1.40361 1.20591 0.75880 0.79756 0.96107 1.22902 1.04155 1.02409 0.96098 1.93010 1.30342 1.96552 1.97493 1.93024 1.88207 1.38508 1.97477 0.90169 0.90787 0.90927 0.91153 0.90786 0.90316 0.75824 0.94975 0.93185 0.93791 0.92512 0.93509 0.77580 0.88998 0.89960 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 7.90 37.16 0.29 -1.42 16 2 C -0.12 -1.65 0.36 -155.66 -0.06 -1.71 16 3 C -0.14 -1.50 7.90 37.16 0.29 -1.21 16 4 C 0.52 9.14 6.25 -10.98 -0.07 9.08 16 5 O -0.54 -11.29 14.47 5.56 0.08 -11.21 16 6 N -0.68 -11.88 4.60 -51.61 -0.24 -12.12 16 7 C 0.14 2.62 3.31 -65.66 -0.22 2.40 16 8 H 0.09 1.73 7.54 -51.93 -0.39 1.34 16 9 C 0.12 2.59 6.95 -2.41 -0.02 2.58 16 10 N -0.60 -14.55 3.39 -169.94 -0.58 -15.13 16 11 C -0.22 -6.04 10.28 -15.06 -0.15 -6.19 16 12 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 13 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 14 N -0.92 -25.70 10.31 55.49 0.57 -25.13 16 15 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 C 0.15 3.34 5.13 -3.06 -0.02 3.32 16 20 C 0.06 1.14 4.12 -24.89 -0.10 1.03 16 21 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 22 O -0.56 -8.79 12.67 -35.23 -0.45 -9.24 16 23 C 0.31 4.27 1.15 -26.73 -0.03 4.24 16 24 C -0.20 -1.73 8.68 37.16 0.32 -1.41 16 25 F -0.19 -3.07 15.63 2.25 0.04 -3.03 16 26 F -0.19 -3.15 15.62 2.25 0.04 -3.12 16 27 H 0.08 0.98 7.57 -51.93 -0.39 0.59 16 28 H 0.07 0.63 6.43 -51.93 -0.33 0.30 16 29 H 0.07 0.97 7.80 -51.93 -0.41 0.56 16 30 H 0.07 0.80 7.80 -51.93 -0.41 0.39 16 31 H 0.07 0.56 6.43 -51.93 -0.33 0.22 16 32 H 0.08 0.81 7.56 -51.93 -0.39 0.42 16 33 H 0.41 6.83 7.22 -40.82 -0.29 6.53 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 37 H 0.06 1.38 7.30 -51.93 -0.38 1.01 16 38 H 0.05 1.16 7.50 -51.93 -0.39 0.77 16 39 H 0.38 4.52 9.11 45.56 0.42 4.93 16 40 H 0.09 0.63 6.43 -51.93 -0.33 0.29 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 0.67 6.43 -51.93 -0.33 0.34 16 LS Contribution 338.90 15.07 5.11 5.11 Total: -1.00 -32.80 338.90 -5.51 -38.31 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -5.21 Total: 8.67 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: 0.15 Total: 10.41 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -0.24 Total: -52.38 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.37 Total: -20.45 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 0.07 Total: -6.15 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.80 -5.51 -38.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220864591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.898 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds