Wall clock time and date at job start Tue Mar 31 2020 09:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47178 * 2 1 4 4 C 1.50703 * 109.46993 * 120.00306 * 2 1 3 5 5 O 1.21281 * 120.00392 * 119.99690 * 4 2 1 6 6 N 1.34779 * 119.99495 * 299.99604 * 4 2 1 7 7 C 1.46507 * 119.99496 * 179.97438 * 6 4 2 8 8 H 1.08994 * 110.88705 * 31.12418 * 7 6 4 9 9 C 1.55126 * 111.19219 * 267.18779 * 7 6 4 10 10 N 1.47428 * 104.72175 * 279.19191 * 9 7 6 11 11 C 1.36938 * 125.64353 * 155.82050 * 10 9 7 12 12 H 1.07999 * 120.00325 * 359.71407 * 11 10 9 13 13 C 1.38815 * 119.99817 * 179.72052 * 11 10 9 14 14 N 1.31621 * 119.99673 * 359.71804 * 13 11 10 15 15 Si 1.86795 * 120.00115 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47071 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47211 * 119.99797 * 15 13 11 18 18 H 1.48493 * 109.47327 * 239.99664 * 15 13 11 19 19 C 1.47015 * 108.70459 * 335.55516 * 10 9 7 20 20 C 1.54331 * 107.27254 * 1.28722 * 19 10 9 21 21 H 1.08999 * 110.71977 * 263.65070 * 20 19 10 22 22 O 1.42896 * 110.72196 * 140.55752 * 20 19 10 23 23 C 1.53004 * 109.47083 * 239.99913 * 2 1 3 24 24 C 1.52997 * 109.46974 * 60.00408 * 23 2 1 25 25 F 1.39903 * 109.47018 * 180.02562 * 23 2 1 26 26 F 1.39900 * 109.46772 * 300.00038 * 23 2 1 27 27 H 1.09005 * 109.47378 * 300.00369 * 1 2 3 28 28 H 1.09006 * 109.47055 * 60.00108 * 1 2 3 29 29 H 1.08998 * 109.47269 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46836 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47519 * 299.99735 * 3 2 1 32 32 H 1.09001 * 109.47432 * 60.00488 * 3 2 1 33 33 H 0.96996 * 120.00559 * 359.97438 * 6 4 2 34 34 H 1.09002 * 110.49480 * 160.35556 * 9 7 6 35 35 H 1.08994 * 110.34371 * 37.96198 * 9 7 6 36 36 H 0.97000 * 120.00043 * 180.02562 * 14 13 11 37 37 H 1.08998 * 109.88677 * 120.70326 * 19 10 9 38 38 H 1.08998 * 109.88703 * 241.87028 * 19 10 9 39 39 H 0.96699 * 114.00307 * 61.44738 * 22 20 19 40 40 H 1.08998 * 109.47265 * 59.99835 * 24 23 2 41 41 H 1.08997 * 109.46780 * 180.02562 * 24 23 2 42 42 H 1.09000 * 109.47210 * 299.99558 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7295 -1.6966 1.1192 6 7 1.7066 -0.2500 2.4546 7 6 2.1945 -0.9410 3.6508 8 1 3.1646 -1.4019 3.4648 9 6 1.1679 -1.9917 4.1493 10 7 0.1742 -1.2127 4.9104 11 6 -1.1234 -1.5840 5.1420 12 1 -1.4962 -2.5183 4.7488 13 6 -1.9597 -0.7596 5.8822 14 7 -1.5038 0.3764 6.3660 15 14 -3.7299 -1.2657 6.1976 16 1 -3.9912 -2.5787 5.5551 17 1 -3.9602 -1.3753 7.6606 18 1 -4.6456 -0.2452 5.6275 19 6 0.8088 0.0257 5.3848 20 6 2.2611 0.0254 4.8628 21 1 2.9442 -0.3524 5.6236 22 8 2.6483 1.3356 4.4442 23 6 2.0400 -0.7213 -1.2493 24 6 1.5300 0.0000 -2.4985 25 9 3.4390 -0.7218 -1.2490 26 9 1.5736 -2.0403 -1.2492 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.1494 0.5389 2.5436 34 1 1.6533 -2.7224 4.7963 35 1 0.6933 -2.4888 3.3034 36 1 -2.0880 0.9524 6.8835 37 1 0.2740 0.8904 4.9920 38 1 0.8066 0.0495 6.4745 39 1 2.6306 1.9956 5.1508 40 1 1.8934 1.0276 -2.4984 41 1 1.8930 -0.5141 -3.3884 42 1 0.4400 0.0000 -2.4985 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220864591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:52 Heat of formation + Delta-G solvation = -185.921836 kcal Electronic energy + Delta-G solvation = -27552.817796 eV Core-core repulsion = 23396.406600 eV Total energy + Delta-G solvation = -4156.411196 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.154 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.89891 -47.89374 -41.31088 -39.52185 -36.95438 -36.62219 -35.27596 -33.48542 -31.09631 -30.06398 -28.79781 -28.39152 -26.44483 -25.88184 -23.40310 -22.21214 -21.44442 -20.61150 -19.15020 -18.55432 -18.32730 -18.20736 -17.64262 -17.11344 -16.68780 -16.46220 -16.09099 -15.77367 -15.50381 -14.95742 -14.83151 -14.44534 -14.29064 -14.22985 -14.03256 -13.87661 -13.81000 -13.65873 -13.54133 -13.21089 -13.14380 -13.08654 -12.78927 -12.73824 -12.59677 -12.52876 -12.30270 -12.01407 -11.93266 -11.75816 -11.62942 -10.88615 -10.77935 -10.74744 -10.08165 -8.91673 -7.87733 -5.22767 1.45944 1.47430 1.54710 1.56967 2.03526 2.46795 2.68517 3.10371 3.14263 3.33446 3.39691 3.39933 3.57547 3.79386 3.87354 3.93136 3.97323 4.03509 4.33329 4.54269 4.58898 4.61609 4.62841 4.65342 4.70983 4.76462 4.80272 4.81619 4.86928 4.97049 5.21786 5.23974 5.39959 5.47145 5.49528 5.69002 6.14596 6.50551 6.86168 7.07785 7.17224 7.71086 8.34725 9.22024 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.017839 B = 0.004630 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.182442 B = 6046.642974 C = 6686.128651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 C -0.140 4.140 4 C 0.514 3.486 5 O -0.578 6.578 6 N -0.681 5.681 7 C 0.145 3.855 8 H 0.096 0.904 9 C 0.124 3.876 10 N -0.615 5.615 11 C -0.241 4.241 12 H 0.074 0.926 13 C -0.054 4.054 14 N -0.944 5.944 15 Si 0.974 3.026 16 H -0.273 1.273 17 H -0.292 1.292 18 H -0.289 1.289 19 C 0.163 3.837 20 C 0.088 3.912 21 H 0.087 0.913 22 O -0.560 6.560 23 C 0.296 3.704 24 C -0.190 4.190 25 F -0.211 7.211 26 F -0.215 7.215 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.410 0.590 34 H 0.039 0.961 35 H 0.033 0.967 36 H 0.249 0.751 37 H 0.033 0.967 38 H 0.018 0.982 39 H 0.396 0.604 40 H 0.117 0.883 41 H 0.088 0.912 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.948 6.448 -14.184 16.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 C -0.197 4.197 4 C 0.301 3.699 5 O -0.458 6.458 6 N -0.330 5.330 7 C 0.039 3.961 8 H 0.114 0.886 9 C -0.003 4.003 10 N -0.342 5.342 11 C -0.370 4.370 12 H 0.092 0.908 13 C -0.248 4.248 14 N -0.593 5.593 15 Si 0.803 3.197 16 H -0.198 1.198 17 H -0.219 1.219 18 H -0.215 1.215 19 C 0.038 3.962 20 C 0.027 3.973 21 H 0.105 0.895 22 O -0.367 6.367 23 C 0.259 3.741 24 C -0.247 4.247 25 F -0.192 7.192 26 F -0.196 7.196 27 H 0.092 0.908 28 H 0.134 0.866 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.131 0.869 32 H 0.098 0.902 33 H 0.246 0.754 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.036 0.964 39 H 0.246 0.754 40 H 0.136 0.864 41 H 0.107 0.893 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.366 5.498 -14.708 16.943 hybrid contribution -1.130 -0.222 1.452 1.853 sum 5.236 5.275 -13.255 15.197 Atomic orbital electron populations 1.21981 0.88926 1.03326 1.05721 1.21954 1.00460 0.99346 0.90616 1.21986 1.01853 0.89867 1.05963 1.20794 0.79602 0.84064 0.85475 1.90705 1.39995 1.27895 1.87206 1.45399 1.52227 1.31331 1.04054 1.22068 0.97091 0.92768 0.84205 0.88601 1.22104 0.90363 0.93685 0.94143 1.44507 1.07836 1.20205 1.61694 1.19368 0.86258 1.03412 1.27981 0.90774 1.25482 1.01941 0.97066 1.00280 1.70106 1.35588 1.12810 1.40779 0.85081 0.80078 0.77497 0.77071 1.19782 1.21944 1.21539 1.21643 0.89203 0.89071 0.96296 1.23215 0.95635 0.83833 0.94604 0.89522 1.86365 1.90234 1.18727 1.41389 1.21320 0.75089 0.79134 0.98522 1.22956 1.05270 1.03056 0.93414 1.92969 1.31971 1.96570 1.97691 1.92974 1.88385 1.40540 1.97695 0.90810 0.86632 0.93118 0.92133 0.86868 0.90151 0.75420 0.94302 0.94850 0.94190 0.94933 0.96402 0.75384 0.86425 0.89260 0.86976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 7.90 71.98 0.57 -2.52 16 2 C -0.12 -3.00 0.36 -52.93 -0.02 -3.02 16 3 C -0.14 -2.53 7.90 71.98 0.57 -1.96 16 4 C 0.51 17.95 6.25 87.66 0.55 18.50 16 5 O -0.58 -24.82 14.47 -3.03 -0.04 -24.86 16 6 N -0.68 -23.49 4.60 -435.59 -2.00 -25.49 16 7 C 0.15 5.37 3.31 46.46 0.15 5.53 16 8 H 0.10 3.55 7.54 -2.39 -0.02 3.53 16 9 C 0.12 5.29 6.95 86.93 0.60 5.89 16 10 N -0.61 -30.30 3.39 -691.56 -2.35 -32.65 16 11 C -0.24 -13.17 10.28 84.03 0.86 -12.30 16 12 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 13 C -0.05 -2.94 5.49 84.86 0.47 -2.47 16 14 N -0.94 -53.05 10.31 21.65 0.22 -52.83 16 15 Si 0.97 44.34 29.55 68.60 2.03 46.37 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 18 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 19 C 0.16 7.32 5.13 86.73 0.45 7.76 16 20 C 0.09 3.02 4.12 31.79 0.13 3.15 16 21 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 22 O -0.56 -16.44 12.67 -148.98 -1.89 -18.33 16 23 C 0.30 7.65 1.15 30.59 0.04 7.69 16 24 C -0.19 -2.67 8.68 71.98 0.62 -2.05 16 25 F -0.21 -6.58 15.63 44.97 0.70 -5.88 16 26 F -0.21 -7.09 15.62 44.97 0.70 -6.39 16 27 H 0.07 1.70 7.57 -2.38 -0.02 1.68 16 28 H 0.12 1.51 6.43 -2.38 -0.02 1.50 16 29 H 0.05 1.32 7.80 -2.39 -0.02 1.30 16 30 H 0.06 1.24 7.80 -2.38 -0.02 1.22 16 31 H 0.11 1.16 6.43 -2.39 -0.02 1.15 16 32 H 0.08 1.45 7.56 -2.39 -0.02 1.43 16 33 H 0.41 13.55 7.22 -92.71 -0.67 12.88 16 34 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.25 13.61 8.31 -92.71 -0.77 12.83 16 37 H 0.03 1.61 7.30 -2.39 -0.02 1.59 16 38 H 0.02 0.90 7.50 -2.39 -0.02 0.88 16 39 H 0.40 8.62 9.11 -74.06 -0.67 7.95 16 40 H 0.12 1.04 6.43 -2.39 -0.02 1.02 16 41 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.11 1.14 6.43 -2.39 -0.02 1.12 16 Total: -1.00 -73.14 338.90 2.08 -71.06 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: -0.28 Total: 24.79 kcal Atomic # 6 Polarization: 19.22 SS G_CDS: 4.99 Total: 24.20 kcal Atomic # 7 Polarization: -106.84 SS G_CDS: -4.13 Total: -110.96 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -1.93 Total: -43.19 kcal Atomic # 9 Polarization: -13.67 SS G_CDS: 1.41 Total: -12.27 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -73.14 2.08 -71.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220864591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.860 kcal (2) G-P(sol) polarization free energy of solvation -73.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds