Wall clock time and date at job start Tue Mar 31 2020 09:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47102 * 2 1 4 4 N 1.46495 * 109.47288 * 120.00212 * 2 1 3 5 5 C 1.39498 * 119.99981 * 154.99719 * 4 2 1 6 6 C 1.39055 * 119.94706 * 180.02562 * 5 4 2 7 7 C 1.37817 * 120.04663 * 180.02562 * 6 5 4 8 8 C 1.39469 * 119.95000 * 359.97438 * 7 6 5 9 9 C 1.48237 * 120.04769 * 179.97438 * 8 7 6 10 10 C 1.39857 * 119.54516 * 359.97438 * 9 8 7 11 11 C 1.37680 * 121.17248 * 179.71587 * 10 9 8 12 12 C 1.39607 * 120.18498 * 0.55771 * 11 10 9 13 13 C 1.43207 * 120.44985 * 179.74111 * 12 11 10 14 14 N 9.62314 * 161.52380 * 296.98383 * 5 1 2 15 15 C 1.46545 * 119.09500 * 359.47269 * 12 11 10 16 16 C 1.40857 * 120.54956 * 180.26751 * 15 12 11 17 17 H 1.08000 * 120.00136 * 335.71998 * 16 15 12 18 18 C 1.40232 * 119.99482 * 155.71729 * 16 15 12 19 19 N 1.30662 * 120.00258 * 341.93027 * 18 16 15 20 20 Si 1.86794 * 119.99685 * 161.93389 * 18 16 15 21 21 H 1.48497 * 109.47498 * 89.99521 * 20 18 16 22 22 H 1.48502 * 109.47146 * 210.00230 * 20 18 16 23 23 H 1.48500 * 109.47161 * 329.99729 * 20 18 16 24 24 C 1.38660 * 119.53944 * 179.97438 * 9 8 7 25 25 C 1.39468 * 119.90022 * 0.27570 * 8 7 6 26 26 C 1.37818 * 119.94925 * 359.46794 * 25 8 7 27 27 H 1.09006 * 109.46660 * 300.00011 * 1 2 3 28 28 H 1.08999 * 109.47105 * 59.99581 * 1 2 3 29 29 H 1.09001 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46920 * 240.00214 * 2 1 3 31 31 H 1.08998 * 109.47059 * 60.00299 * 3 2 1 32 32 H 1.08993 * 109.46727 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46996 * 299.99997 * 3 2 1 34 34 H 0.97000 * 120.00041 * 334.99623 * 4 2 1 35 35 H 1.07992 * 119.97625 * 359.97438 * 6 5 4 36 36 H 1.08002 * 120.02720 * 179.97438 * 7 6 5 37 37 H 1.08004 * 119.41215 * 0.02562 * 10 9 8 38 38 H 1.07998 * 119.90972 * 180.30668 * 11 10 9 39 39 H 0.96999 * 119.99810 * 185.04501 * 19 18 16 40 40 H 1.07999 * 120.13041 * 359.97438 * 24 9 8 41 41 H 1.08000 * 120.02471 * 179.73082 * 25 8 7 42 42 H 1.07997 * 119.97720 * 180.25899 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 3.2832 -1.2791 1.1942 6 6 3.7454 -1.9349 2.3299 7 6 4.9948 -2.5165 2.3305 8 6 5.7954 -2.4476 1.1906 9 6 7.1399 -3.0720 1.1889 10 6 7.5970 -3.7280 2.3364 11 6 8.8375 -4.3244 2.3699 12 6 9.6713 -4.2732 1.2514 13 6 10.9649 -4.8869 1.2818 14 7 11.9885 -5.3791 1.3039 15 6 9.2025 -3.5880 0.0438 16 6 10.0164 -3.5228 -1.1040 17 1 11.0890 -3.6083 -1.0110 18 6 9.4338 -3.3469 -2.3674 19 7 8.1623 -3.5927 -2.5405 20 14 10.4758 -2.7613 -3.8029 21 1 11.0528 -3.9346 -4.5069 22 1 9.6295 -1.9856 -4.7449 23 1 11.5735 -1.8980 -3.2980 24 6 7.9268 -2.9976 0.0497 25 6 5.3318 -1.7849 0.0544 26 6 4.0796 -1.2092 0.0566 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.4623 -0.7387 1.9894 35 1 3.1253 -1.9876 3.2125 36 1 5.3537 -3.0254 3.2129 37 1 6.9637 -3.7717 3.2102 38 1 9.1680 -4.8298 3.2652 39 1 7.7750 -3.5420 -3.4284 40 1 7.5610 -2.4882 -0.8296 41 1 5.9519 -1.7265 -0.8280 42 1 3.7184 -0.6995 -0.8244 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236485540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:14:53 Heat of formation + Delta-G solvation = 57.742626 kcal Electronic energy + Delta-G solvation = -23256.627807 eV Core-core repulsion = 19972.321144 eV Total energy + Delta-G solvation = -3284.306663 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.38951 -37.79352 -36.44593 -35.01221 -34.07397 -32.44422 -30.72299 -30.15194 -29.74798 -27.49710 -26.85835 -25.77788 -22.95818 -22.83274 -21.17828 -20.53077 -20.00303 -17.86895 -17.15879 -17.04887 -16.01982 -15.58244 -14.94994 -14.79319 -14.17691 -14.04714 -13.52194 -13.38319 -13.31267 -13.09804 -12.75439 -12.63708 -12.62907 -12.53160 -12.36154 -12.13166 -11.73051 -11.66256 -11.52157 -11.28993 -11.23620 -11.12362 -11.04192 -10.92397 -10.71993 -10.44664 -9.90324 -9.80199 -9.58266 -9.39685 -8.51462 -7.89349 -7.68458 -7.11712 -6.57346 -4.66727 1.54567 1.89440 2.55298 2.72116 2.93831 2.98601 3.12333 3.46755 3.71982 3.97572 4.05677 4.49565 4.60022 4.64014 4.86789 4.99925 5.27813 5.31928 5.35238 5.45777 5.47829 5.54355 5.55709 5.63402 5.67173 5.82843 5.87503 5.90306 6.06569 6.11338 6.13088 6.39486 6.52066 6.59799 6.75633 6.80984 6.87941 7.02992 7.15923 7.21576 7.33920 7.53659 7.63723 7.74736 7.85188 7.89474 7.96535 8.28342 8.48970 8.61460 8.88972 9.80007 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.014506 B = 0.003678 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.789689 B = 7610.330803 C = 9311.973001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.144 3.856 3 C -0.169 4.169 4 N -0.749 5.749 5 C 0.202 3.798 6 C -0.199 4.199 7 C -0.068 4.068 8 C -0.078 4.078 9 C -0.006 4.006 10 C -0.240 4.240 11 C -0.028 4.028 12 C -0.191 4.191 13 C 0.301 3.699 14 N -0.515 5.515 15 C 0.151 3.849 16 C -0.432 4.432 17 H 0.085 0.915 18 C 0.078 3.922 19 N -0.765 5.765 20 Si 0.912 3.088 21 H -0.265 1.265 22 H -0.271 1.271 23 H -0.256 1.256 24 C -0.152 4.152 25 C -0.061 4.061 26 C -0.198 4.198 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.394 0.606 35 H 0.112 0.888 36 H 0.123 0.877 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.290 0.710 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.222 8.731 1.729 18.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.038 3.962 3 C -0.228 4.228 4 N -0.380 5.380 5 C 0.101 3.899 6 C -0.221 4.221 7 C -0.087 4.087 8 C -0.080 4.080 9 C -0.007 4.007 10 C -0.260 4.260 11 C -0.049 4.049 12 C -0.197 4.197 13 C -0.008 4.008 14 N -0.194 5.194 15 C 0.145 3.855 16 C -0.460 4.460 17 H 0.104 0.896 18 C -0.145 4.145 19 N -0.388 5.388 20 Si 0.736 3.264 21 H -0.190 1.190 22 H -0.195 1.195 23 H -0.179 1.179 24 C -0.172 4.172 25 C -0.080 4.080 26 C -0.220 4.220 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.228 0.772 35 H 0.130 0.870 36 H 0.141 0.859 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.101 0.899 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.888 8.103 1.396 17.008 hybrid contribution -0.307 0.329 -0.411 0.610 sum -15.194 8.433 0.984 17.405 Atomic orbital electron populations 1.22051 0.94760 1.02417 1.02463 1.20824 0.93660 0.92534 0.89184 1.22308 1.02302 0.96542 1.01668 1.44617 1.16055 1.61669 1.15610 1.17791 0.85336 0.92737 0.94080 1.20404 0.98121 1.06226 0.97387 1.21023 0.92746 0.97146 0.97753 1.18883 0.94802 1.00569 0.93753 1.18505 0.91466 0.96472 0.94216 1.20143 0.97543 1.10234 0.98074 1.20361 0.93165 0.96274 0.95118 1.16973 0.90350 1.13567 0.98852 1.25843 0.92492 0.91413 0.91052 1.81008 1.13023 1.14472 1.10902 1.18337 0.91387 0.86144 0.89594 1.19756 0.95570 1.40016 0.90647 0.89648 1.26087 0.95150 0.92120 1.01149 1.69703 1.12687 1.30959 1.25417 0.86198 0.80666 0.80075 0.79502 1.19021 1.19546 1.17914 1.21400 0.94997 1.03708 0.97048 1.21193 0.94474 0.94298 0.97986 1.20541 0.95898 1.08111 0.97452 0.92375 0.91305 0.92084 0.90346 0.92643 0.91934 0.92164 0.77237 0.86972 0.85911 0.88292 0.88396 0.89902 0.85107 0.85323 0.86668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 9.38 37.16 0.35 -0.72 16 2 C 0.14 1.28 2.87 -67.93 -0.20 1.08 16 3 C -0.17 -1.46 9.42 37.16 0.35 -1.11 16 4 N -0.75 -7.79 5.24 -52.14 -0.27 -8.07 16 5 C 0.20 2.75 6.64 -83.77 -0.56 2.19 16 6 C -0.20 -2.78 9.88 -39.43 -0.39 -3.16 16 7 C -0.07 -1.09 9.40 -39.28 -0.37 -1.46 16 8 C -0.08 -1.45 5.88 -104.87 -0.62 -2.06 16 9 C -0.01 -0.12 5.86 -105.03 -0.62 -0.73 16 10 C -0.24 -4.82 9.36 -39.18 -0.37 -5.19 16 11 C -0.03 -0.59 9.74 -39.27 -0.38 -0.98 16 12 C -0.19 -4.49 5.95 -104.11 -0.62 -5.11 16 13 C 0.30 7.25 14.28 -22.47 -0.32 6.93 16 14 N -0.51 -12.69 18.54 41.84 0.78 -11.92 16 15 C 0.15 3.71 5.74 -104.68 -0.60 3.10 16 16 C -0.43 -10.71 8.58 -37.84 -0.32 -11.03 16 17 H 0.09 2.15 7.37 -52.49 -0.39 1.76 16 18 C 0.08 1.77 5.15 -17.30 -0.09 1.68 16 19 N -0.77 -17.50 10.96 55.56 0.61 -16.89 16 20 Si 0.91 17.34 29.60 -169.99 -5.03 12.31 16 21 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 22 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 23 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 24 C -0.15 -3.52 8.07 -38.55 -0.31 -3.83 16 25 C -0.06 -1.06 9.40 -39.28 -0.37 -1.43 16 26 C -0.20 -2.94 8.82 -39.44 -0.35 -3.29 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.77 6.47 -51.93 -0.34 0.43 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.64 7.68 -51.93 -0.40 0.25 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.39 3.44 8.61 -40.82 -0.35 3.09 16 35 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.12 1.80 6.12 -52.49 -0.32 1.48 16 37 H 0.10 1.72 6.09 -52.48 -0.32 1.40 16 38 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.29 5.95 8.30 -40.82 -0.34 5.61 16 40 H 0.13 3.02 4.24 -52.49 -0.22 2.80 16 41 H 0.13 2.32 6.14 -52.49 -0.32 2.00 16 42 H 0.12 1.52 6.08 -52.49 -0.32 1.20 16 LS Contribution 354.00 15.07 5.33 5.33 Total: -1.00 -26.42 354.00 -9.43 -35.85 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -5.07 Total: 8.49 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -5.77 Total: -25.11 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 1.11 Total: -36.87 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -26.42 -9.43 -35.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236485540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.594 kcal (2) G-P(sol) polarization free energy of solvation -26.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds