Wall clock time and date at job start Tue Mar 31 2020 09:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47098 * 2 1 4 4 N 1.46507 * 109.47061 * 119.99603 * 2 1 3 5 5 C 1.35060 * 125.92707 * 275.00409 * 4 2 1 6 6 C 1.35044 * 108.00315 * 180.02562 * 5 4 2 7 7 C 1.40934 * 107.85131 * 359.97438 * 6 5 4 8 8 C 1.48198 * 126.05101 * 180.26579 * 7 6 5 9 9 C 1.36661 * 120.33973 * 359.71801 * 8 7 6 10 10 C 1.41125 * 120.59282 * 179.97438 * 9 8 7 11 11 C 1.41212 * 119.49028 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00357 * 333.24077 * 11 10 9 13 13 C 1.39926 * 120.00119 * 153.24378 * 11 10 9 14 14 N 1.30836 * 119.99474 * 342.94967 * 13 11 10 15 15 Si 1.86796 * 120.00251 * 162.95057 * 13 11 10 16 16 H 1.48498 * 109.47019 * 59.99652 * 15 13 11 17 17 H 1.48501 * 109.47312 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47322 * 299.99862 * 15 13 11 19 19 C 1.39961 * 121.01923 * 359.97438 * 10 9 8 20 20 C 1.39897 * 120.10904 * 0.02562 * 19 10 9 21 21 C 1.40856 * 121.13982 * 179.97438 * 20 19 10 22 22 C 1.36181 * 119.60541 * 179.97438 * 21 20 19 23 23 C 1.39248 * 120.94567 * 0.02894 * 22 21 20 24 24 C 1.36539 * 120.97834 * 359.97438 * 23 22 21 25 25 C 1.39813 * 119.73675 * 359.67275 * 24 23 22 26 26 N 1.31707 * 107.89539 * 0.02562 * 7 6 5 27 27 H 1.09010 * 109.46992 * 300.00113 * 1 2 3 28 28 H 1.08994 * 109.47246 * 60.00132 * 1 2 3 29 29 H 1.09002 * 109.47290 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47126 * 239.99642 * 2 1 3 31 31 H 1.09004 * 109.47670 * 60.00272 * 3 2 1 32 32 H 1.09002 * 109.47273 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47644 * 299.99818 * 3 2 1 34 34 H 1.08002 * 125.99403 * 0.04876 * 5 4 2 35 35 H 1.08009 * 126.07157 * 180.02562 * 6 5 4 36 36 H 1.08000 * 119.70376 * 359.97359 * 9 8 7 37 37 H 0.97005 * 119.99885 * 180.02562 * 14 13 11 38 38 H 1.07998 * 119.95008 * 180.02562 * 19 10 9 39 39 H 1.08001 * 120.19490 * 0.02562 * 21 20 19 40 40 H 1.08005 * 119.52884 * 179.97438 * 22 21 20 41 41 H 1.08002 * 119.50952 * 179.97438 * 23 22 21 42 42 H 1.08005 * 120.13035 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1925 -0.1364 2.4156 6 6 2.6555 -1.0944 3.2471 7 6 2.7706 -2.2891 2.5084 8 6 3.2367 -3.5956 3.0299 9 6 3.6101 -3.7231 4.3383 10 6 4.0542 -4.9649 4.8408 11 6 4.4340 -5.0704 6.1968 12 1 4.8001 -4.2021 6.7242 13 6 4.3359 -6.3002 6.8571 14 7 3.5996 -7.2567 6.3524 15 14 5.2561 -6.5762 8.4591 16 1 4.7981 -5.5889 9.4694 17 1 4.9889 -7.9509 8.9529 18 1 6.7134 -6.4083 8.2281 19 6 4.1231 -6.0936 4.0161 20 6 3.7496 -6.0038 2.6709 21 6 3.8109 -7.1257 1.8214 22 6 3.4392 -7.0031 0.5171 23 6 2.9994 -5.7833 0.0095 24 6 2.9277 -4.6758 0.8050 25 6 3.2938 -4.7643 2.1514 26 7 2.3857 -2.0400 1.2737 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.9957 0.8922 2.6793 35 1 2.8943 -0.9678 4.2929 36 1 3.5649 -2.8659 4.9937 37 1 3.5313 -8.1091 6.8103 38 1 4.4652 -7.0355 4.4188 39 1 4.1499 -8.0777 2.2025 40 1 3.4871 -7.8640 -0.1333 41 1 2.7106 -5.7121 -1.0288 42 1 2.5849 -3.7365 0.3969 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242458317.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:12:27 Heat of formation + Delta-G solvation = 107.360746 kcal Electronic energy + Delta-G solvation = -23933.995394 eV Core-core repulsion = 20651.840335 eV Total energy + Delta-G solvation = -3282.155060 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.86170 -38.63303 -35.93684 -35.50787 -33.38993 -31.61871 -29.88064 -29.56630 -29.22326 -27.72386 -27.53456 -25.22051 -23.05852 -22.28536 -21.21612 -21.19799 -19.54526 -19.20158 -17.40497 -16.90380 -15.97346 -15.75453 -15.13134 -14.92282 -14.51381 -14.29118 -13.84853 -13.48173 -13.24896 -13.06453 -12.96204 -12.60899 -12.45298 -12.33898 -12.18405 -12.07171 -11.79267 -11.59463 -11.47118 -11.29191 -11.15190 -10.85803 -10.83133 -10.43191 -10.27031 -10.10240 -9.57577 -9.41671 -9.29283 -8.89231 -8.43395 -8.15569 -7.41380 -6.81580 -6.55759 -4.34799 1.56025 2.28281 2.38474 2.68364 2.92593 3.01425 3.05390 3.08662 3.83624 3.90256 4.19406 4.38031 4.68529 4.85439 4.88418 4.92905 5.12338 5.20571 5.33149 5.41619 5.58995 5.65716 5.70030 5.80195 5.88244 5.92640 6.00072 6.07091 6.15398 6.27792 6.36800 6.54560 6.68976 6.75755 6.89304 7.05173 7.06822 7.20663 7.29397 7.41273 7.47734 7.52803 7.68497 7.78639 7.95079 8.09865 8.18940 8.27387 8.55722 8.77602 8.84114 10.13315 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.015362 B = 0.004120 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.263600 B = 6794.141830 C = 8367.389383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.156 3.844 3 C -0.163 4.163 4 N -0.378 5.378 5 C 0.047 3.953 6 C -0.260 4.260 7 C 0.142 3.858 8 C -0.025 4.025 9 C -0.109 4.109 10 C 0.097 3.903 11 C -0.452 4.452 12 H 0.080 0.920 13 C 0.074 3.926 14 N -0.782 5.782 15 Si 0.909 3.091 16 H -0.265 1.265 17 H -0.278 1.278 18 H -0.263 1.263 19 C -0.195 4.195 20 C -0.002 4.002 21 C -0.141 4.141 22 C -0.119 4.119 23 C -0.193 4.193 24 C -0.081 4.081 25 C -0.113 4.113 26 N -0.294 5.294 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.165 0.835 35 H 0.147 0.853 36 H 0.107 0.893 37 H 0.283 0.717 38 H 0.122 0.878 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.287 11.920 -7.706 14.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.054 3.946 3 C -0.221 4.221 4 N -0.160 5.160 5 C -0.098 4.098 6 C -0.289 4.289 7 C -0.022 4.022 8 C -0.027 4.027 9 C -0.130 4.130 10 C 0.095 3.905 11 C -0.481 4.481 12 H 0.098 0.902 13 C -0.145 4.145 14 N -0.406 5.406 15 Si 0.733 3.267 16 H -0.190 1.190 17 H -0.203 1.203 18 H -0.187 1.187 19 C -0.215 4.215 20 C -0.003 4.003 21 C -0.159 4.159 22 C -0.137 4.137 23 C -0.212 4.212 24 C -0.099 4.099 25 C -0.114 4.114 26 N -0.115 5.115 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.183 0.817 35 H 0.165 0.835 36 H 0.125 0.875 37 H 0.094 0.906 38 H 0.140 0.860 39 H 0.126 0.874 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.639 11.346 -8.956 14.906 hybrid contribution 0.349 0.132 1.596 1.639 sum -3.290 11.478 -7.360 14.026 Atomic orbital electron populations 1.22239 0.94010 1.03380 1.02619 1.21136 0.94547 0.92509 0.86395 1.22179 1.02331 0.94314 1.03274 1.48887 1.51415 1.07706 1.08040 1.22217 1.02148 0.99443 0.85955 1.21504 1.13634 0.92350 1.01402 1.20955 0.96710 0.94040 0.90477 1.18352 1.03065 0.87796 0.93534 1.21126 1.00318 0.98407 0.93149 1.17344 0.89597 0.90263 0.93312 1.19570 1.37394 0.95660 0.95431 0.90180 1.25895 0.93477 0.95484 0.99659 1.69829 1.27853 1.04602 1.38358 0.86353 0.80981 0.78173 0.81190 1.18966 1.20294 1.18736 1.21226 1.09505 1.00400 0.90416 1.17954 0.96301 0.91671 0.94326 1.20863 1.03716 0.97593 0.93749 1.20507 1.00900 0.96803 0.95495 1.20390 1.08220 0.93768 0.98845 1.21401 0.96739 0.98730 0.93061 1.18531 1.07268 0.92374 0.93222 1.77501 1.22663 0.91891 1.19478 0.92042 0.90853 0.91515 0.88270 0.91647 0.91515 0.90314 0.81732 0.83549 0.87513 0.90618 0.86009 0.87379 0.88311 0.88449 0.84610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.52 37.16 0.35 -1.13 16 2 C 0.16 1.63 3.93 -67.93 -0.27 1.36 16 3 C -0.16 -1.20 8.83 37.15 0.33 -0.87 16 4 N -0.38 -5.58 3.53 -54.91 -0.19 -5.77 16 5 C 0.05 0.65 10.56 -17.27 -0.18 0.47 16 6 C -0.26 -4.40 10.16 -39.70 -0.40 -4.80 16 7 C 0.14 2.89 6.93 -82.81 -0.57 2.31 16 8 C -0.03 -0.59 6.01 -103.13 -0.62 -1.21 16 9 C -0.11 -2.57 9.20 -39.06 -0.36 -2.93 16 10 C 0.10 2.52 5.54 -107.03 -0.59 1.93 16 11 C -0.45 -11.45 8.99 -37.82 -0.34 -11.79 16 12 H 0.08 1.91 7.90 -52.49 -0.41 1.49 16 13 C 0.07 1.79 5.10 -17.34 -0.09 1.70 16 14 N -0.78 -19.84 11.00 55.55 0.61 -19.23 16 15 Si 0.91 18.09 29.59 -169.99 -5.03 13.06 16 16 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 17 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 18 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 19 C -0.19 -5.10 8.37 -38.32 -0.32 -5.42 16 20 C 0.00 -0.05 5.74 -106.88 -0.61 -0.67 16 21 C -0.14 -3.15 9.78 -39.33 -0.38 -3.53 16 22 C -0.12 -2.41 9.95 -39.95 -0.40 -2.80 16 23 C -0.19 -3.95 9.96 -39.82 -0.40 -4.34 16 24 C -0.08 -1.79 9.36 -39.61 -0.37 -2.16 16 25 C -0.11 -2.73 5.91 -104.66 -0.62 -3.34 16 26 N -0.29 -5.62 9.39 33.41 0.31 -5.31 16 27 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.43 7.14 -51.93 -0.37 0.06 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.17 1.58 7.24 -52.49 -0.38 1.20 16 35 H 0.15 2.25 7.33 -52.48 -0.38 1.87 16 36 H 0.11 2.26 6.98 -52.49 -0.37 1.90 16 37 H 0.28 6.55 8.30 -40.82 -0.34 6.22 16 38 H 0.12 3.28 6.19 -52.49 -0.32 2.96 16 39 H 0.11 2.24 8.06 -52.49 -0.42 1.82 16 40 H 0.10 1.69 8.06 -52.48 -0.42 1.26 16 41 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 42 H 0.14 2.89 4.96 -52.48 -0.26 2.63 16 LS Contribution 347.73 15.07 5.24 5.24 Total: -1.00 -29.58 347.73 -10.35 -39.93 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -5.44 Total: 9.30 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: -5.85 Total: -37.23 kcal Atomic # 7 Polarization: -31.04 SS G_CDS: 0.73 Total: -30.31 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.58 -10.35 -39.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242458317.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.289 kcal (2) G-P(sol) polarization free energy of solvation -29.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds