Wall clock time and date at job start Tue Mar 31 2020 09:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46986 * 2 1 4 4 N 1.46496 * 109.47222 * 120.00125 * 2 1 3 5 5 N 1.40043 * 126.11797 * 303.18928 * 4 2 1 6 6 C 1.30879 * 108.75616 * 180.02562 * 5 4 2 7 7 C 1.39457 * 108.68392 * 359.73178 * 6 5 4 8 8 C 1.36410 * 126.11790 * 123.22802 * 4 2 1 9 9 C 1.47698 * 126.43622 * 359.97110 * 8 4 2 10 10 C 1.37880 * 120.40493 * 310.17349 * 9 8 4 11 11 C 1.41078 * 120.41976 * 180.23631 * 10 9 8 12 12 C 1.41230 * 119.47937 * 179.72697 * 11 10 9 13 13 H 1.08000 * 119.99906 * 330.93714 * 12 11 10 14 14 C 1.39907 * 120.00316 * 150.94462 * 12 11 10 15 15 N 1.30848 * 120.00214 * 160.76777 * 14 12 11 16 16 Si 1.86801 * 119.99779 * 340.76845 * 14 12 11 17 17 H 1.48506 * 109.47245 * 90.90824 * 16 14 12 18 18 H 1.48507 * 109.47149 * 210.90642 * 16 14 12 19 19 H 1.48502 * 109.47279 * 330.90577 * 16 14 12 20 20 C 1.39973 * 121.04048 * 359.43303 * 11 10 9 21 21 C 1.39881 * 120.29134 * 0.61585 * 20 11 10 22 22 C 1.40882 * 121.06408 * 179.65958 * 21 20 11 23 23 C 1.36198 * 119.61827 * 179.97438 * 22 21 20 24 24 C 1.39230 * 120.93645 * 359.97438 * 23 22 21 25 25 C 1.36571 * 120.96200 * 0.03034 * 24 23 22 26 26 C 1.39749 * 119.74821 * 359.97052 * 25 24 23 27 27 H 1.09004 * 109.47415 * 299.99557 * 1 2 3 28 28 H 1.08996 * 109.47752 * 59.99990 * 1 2 3 29 29 H 1.09005 * 109.47328 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46930 * 240.00290 * 2 1 3 31 31 H 1.09001 * 109.47049 * 60.00363 * 3 2 1 32 32 H 1.08995 * 109.47074 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47223 * 300.00123 * 3 2 1 34 34 H 1.08004 * 125.66142 * 180.02562 * 6 5 4 35 35 H 1.07997 * 126.16467 * 180.26468 * 7 6 5 36 36 H 1.07997 * 119.79302 * 359.96321 * 10 9 8 37 37 H 0.97000 * 120.00111 * 179.97438 * 15 14 12 38 38 H 1.07998 * 119.85243 * 180.26240 * 20 11 10 39 39 H 1.07998 * 120.19102 * 359.97438 * 22 21 20 40 40 H 1.07999 * 119.53181 * 180.02562 * 23 22 21 41 41 H 1.07996 * 119.51810 * 179.97438 * 24 23 22 42 42 H 1.08006 * 120.12196 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 7 1.7096 -0.3631 2.5223 6 6 2.3280 -1.1991 3.3171 7 6 3.0537 -2.1010 2.5394 8 6 2.8556 -1.7673 1.2174 9 6 3.4355 -2.4509 0.0436 10 6 2.6299 -2.8414 -1.0050 11 6 3.1827 -3.4988 -2.1242 12 6 2.3383 -3.8952 -3.1846 13 1 1.3046 -4.1399 -2.9892 14 6 2.8407 -3.9710 -4.4881 15 7 2.2103 -4.6761 -5.3923 16 14 4.4116 -3.0657 -4.9377 17 1 5.5773 -3.9603 -4.7226 18 1 4.3571 -2.6583 -6.3647 19 1 4.5494 -1.8590 -4.0832 20 6 4.5558 -3.7591 -2.2029 21 6 5.4067 -3.3799 -1.1594 22 6 6.7900 -3.6402 -1.2185 23 6 7.5916 -3.2576 -0.1859 24 6 7.0636 -2.6117 0.9288 25 6 5.7274 -2.3441 1.0184 26 6 4.8733 -2.7215 -0.0214 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 2.2802 -1.1944 4.3960 35 1 3.6636 -2.9128 2.9073 36 1 1.5683 -2.6466 -0.9676 37 1 2.5584 -4.7283 -6.2962 38 1 4.9591 -4.2599 -3.0706 39 1 7.2124 -4.1401 -2.0775 40 1 8.6519 -3.4575 -0.2328 41 1 7.7202 -2.3188 1.7346 42 1 5.3323 -1.8426 1.8896 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242559069.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:12:30 Heat of formation + Delta-G solvation = 99.145997 kcal Electronic energy + Delta-G solvation = -24757.301365 eV Core-core repulsion = 21474.790087 eV Total energy + Delta-G solvation = -3282.511278 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.83675 -38.94527 -36.00038 -35.38315 -33.73266 -32.33820 -30.16296 -29.98966 -29.02959 -28.07391 -27.22458 -25.26309 -23.22224 -22.39745 -21.80910 -21.08745 -20.14694 -19.12750 -17.94528 -16.44818 -16.36128 -15.91292 -15.33603 -14.74779 -14.60553 -14.36973 -14.21913 -13.42761 -13.41539 -13.26489 -12.86770 -12.78606 -12.71418 -12.51146 -12.35831 -12.16214 -11.98129 -11.88269 -11.35691 -11.30412 -11.14821 -11.01797 -10.96819 -10.44428 -10.28469 -10.19280 -10.01259 -9.75407 -9.40143 -9.04033 -8.76065 -8.17352 -7.79395 -7.22204 -6.99301 -4.69250 1.21489 1.99729 2.14786 2.65094 2.92004 2.96899 3.07086 3.15517 3.27641 3.71950 3.82577 4.57184 4.64344 4.92792 5.00662 5.09277 5.20535 5.28318 5.47058 5.58357 5.58708 5.63860 5.69912 5.74234 5.77022 5.92262 5.95722 6.00295 6.10771 6.18399 6.22691 6.26097 6.29570 6.38409 6.51379 6.59563 6.82076 6.97784 6.98859 7.05574 7.12817 7.24017 7.31126 7.37495 7.62673 7.70494 7.82285 8.04321 8.07332 8.31047 8.50904 9.77953 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.011529 B = 0.006454 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.176279 B = 4337.522202 C = 5978.540669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.148 3.852 3 C -0.158 4.158 4 N -0.357 5.357 5 N -0.303 5.303 6 C 0.039 3.961 7 C -0.270 4.270 8 C 0.149 3.851 9 C -0.030 4.030 10 C -0.112 4.112 11 C 0.086 3.914 12 C -0.424 4.424 13 H 0.095 0.905 14 C 0.083 3.917 15 N -0.790 5.790 16 Si 0.919 3.081 17 H -0.265 1.265 18 H -0.292 1.292 19 H -0.245 1.245 20 C -0.285 4.285 21 C 0.025 3.975 22 C -0.152 4.152 23 C -0.106 4.106 24 C -0.187 4.187 25 C -0.076 4.076 26 C -0.110 4.110 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.177 0.823 35 H 0.145 0.855 36 H 0.109 0.891 37 H 0.290 0.710 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.840 6.688 7.517 10.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 C -0.216 4.216 4 N -0.140 5.140 5 N -0.125 5.125 6 C -0.145 4.145 7 C -0.299 4.299 8 C 0.022 3.978 9 C -0.032 4.032 10 C -0.132 4.132 11 C 0.083 3.917 12 C -0.451 4.451 13 H 0.113 0.887 14 C -0.139 4.139 15 N -0.412 5.412 16 Si 0.746 3.254 17 H -0.191 1.191 18 H -0.219 1.219 19 H -0.168 1.168 20 C -0.306 4.306 21 C 0.025 3.975 22 C -0.170 4.170 23 C -0.124 4.124 24 C -0.206 4.206 25 C -0.094 4.094 26 C -0.112 4.112 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.194 0.806 35 H 0.163 0.837 36 H 0.127 0.873 37 H 0.101 0.899 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.855 7.676 7.079 10.476 hybrid contribution 1.173 -0.587 -0.315 1.349 sum 2.027 7.088 6.764 10.005 Atomic orbital electron populations 1.22089 0.93361 1.03052 1.02986 1.21433 0.95483 0.93835 0.84636 1.22111 1.01878 0.94697 1.02910 1.49152 1.36381 1.23290 1.05166 1.77114 1.24418 1.24311 0.86640 1.23575 0.97009 0.94264 0.99667 1.21637 1.11120 1.06448 0.90655 1.20026 0.93257 0.89619 0.94903 1.18804 0.92440 1.00581 0.91367 1.21440 0.98128 0.99743 0.93844 1.17440 0.92244 0.89788 0.92258 1.19627 0.99168 1.35483 0.90790 0.88735 1.26263 0.98467 0.92950 0.96220 1.69696 1.38466 1.28100 1.04942 0.86176 0.80551 0.81981 0.76740 1.19110 1.21935 1.16848 1.20887 0.93764 1.15093 1.00812 1.17693 0.92708 0.94134 0.93011 1.20906 0.93040 1.03922 0.99167 1.20563 0.98567 0.98964 0.94328 1.20422 0.95198 1.05834 0.99103 1.20854 0.93295 0.97948 0.97324 1.18311 0.90717 1.06021 0.96130 0.91390 0.90749 0.91970 0.87170 0.91491 0.92115 0.90809 0.80560 0.83679 0.87293 0.89898 0.87388 0.87147 0.87733 0.87774 0.86666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.41 37.16 0.35 -1.67 16 2 C 0.15 2.19 3.44 -67.93 -0.23 1.95 16 3 C -0.16 -2.04 9.49 37.16 0.35 -1.68 16 4 N -0.36 -6.01 3.32 -50.73 -0.17 -6.18 16 5 N -0.30 -4.99 12.39 30.55 0.38 -4.61 16 6 C 0.04 0.58 11.98 -17.50 -0.21 0.37 16 7 C -0.27 -4.38 8.88 -39.29 -0.35 -4.73 16 8 C 0.15 2.70 5.98 -82.13 -0.49 2.21 16 9 C -0.03 -0.60 5.60 -102.86 -0.58 -1.18 16 10 C -0.11 -2.37 7.89 -38.64 -0.30 -2.67 16 11 C 0.09 2.01 5.12 -107.03 -0.55 1.46 16 12 C -0.42 -10.46 9.51 -37.82 -0.36 -10.82 16 13 H 0.09 2.41 8.06 -52.49 -0.42 1.99 16 14 C 0.08 2.00 5.37 -17.35 -0.09 1.91 16 15 N -0.79 -19.51 13.93 55.55 0.77 -18.74 16 16 Si 0.92 19.85 24.55 -169.99 -4.17 15.68 16 17 H -0.27 -5.65 6.47 56.52 0.37 -5.28 16 18 H -0.29 -6.05 7.11 56.52 0.40 -5.64 16 19 H -0.25 -5.44 7.06 56.52 0.40 -5.05 16 20 C -0.29 -6.64 6.98 -38.32 -0.27 -6.91 16 21 C 0.02 0.54 5.74 -106.89 -0.61 -0.07 16 22 C -0.15 -2.97 9.78 -39.32 -0.38 -3.35 16 23 C -0.11 -1.83 9.95 -39.95 -0.40 -2.23 16 24 C -0.19 -3.19 9.96 -39.81 -0.40 -3.59 16 25 C -0.08 -1.40 9.17 -39.62 -0.36 -1.77 16 26 C -0.11 -2.29 5.91 -104.63 -0.62 -2.91 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.11 1.77 5.88 -51.93 -0.31 1.46 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.18 1.93 8.06 -52.48 -0.42 1.50 16 35 H 0.15 2.19 7.91 -52.49 -0.41 1.78 16 36 H 0.11 2.16 7.60 -52.49 -0.40 1.76 16 37 H 0.29 6.49 8.30 -40.82 -0.34 6.15 16 38 H 0.11 2.54 4.43 -52.49 -0.23 2.30 16 39 H 0.11 2.00 8.06 -52.49 -0.42 1.58 16 40 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.12 1.96 5.88 -52.48 -0.31 1.65 16 LS Contribution 344.12 15.07 5.19 5.19 Total: -1.00 -26.54 344.12 -8.99 -35.53 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -5.48 Total: 8.80 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: -5.50 Total: -35.66 kcal Atomic # 7 Polarization: -30.52 SS G_CDS: 0.98 Total: -29.53 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.17 Total: 15.68 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -26.54 -8.99 -35.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242559069.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.679 kcal (2) G-P(sol) polarization free energy of solvation -26.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds