Wall clock time and date at job start Tue Mar 31 2020 08:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47062 * 2 1 4 4 C 1.53003 * 109.46845 * 240.00035 * 2 1 3 5 5 C 1.50695 * 109.46837 * 119.99774 * 2 1 3 6 6 C 1.38015 * 119.55911 * 75.28306 * 5 2 1 7 7 C 1.39763 * 119.01766 * 180.24522 * 6 5 2 8 8 C 1.48331 * 120.91031 * 179.75480 * 7 6 5 9 9 C 1.39810 * 119.53690 * 359.71968 * 8 7 6 10 10 C 1.37728 * 121.17560 * 180.02562 * 9 8 7 11 11 C 1.39561 * 120.18576 * 359.97438 * 10 9 8 12 12 C 1.43197 * 120.45990 * 180.02562 * 11 10 9 13 13 N 9.75470 * 93.48315 * 93.80764 * 4 1 2 14 14 C 1.46524 * 119.09033 * 359.97438 * 11 10 9 15 15 C 1.40832 * 120.55969 * 180.02562 * 14 11 10 16 16 H 1.08001 * 119.99455 * 329.57603 * 15 14 11 17 17 C 1.40244 * 120.00297 * 149.57731 * 15 14 11 18 18 N 1.30657 * 119.99710 * 162.25814 * 17 15 14 19 19 Si 1.86796 * 119.99755 * 342.25697 * 17 15 14 20 20 H 1.48500 * 109.47247 * 95.42540 * 19 17 15 21 21 H 1.48506 * 109.46819 * 215.42162 * 19 17 15 22 22 H 1.48500 * 109.47311 * 335.42180 * 19 17 15 23 23 C 1.38589 * 119.53872 * 179.44533 * 8 7 6 24 24 C 1.39807 * 118.18368 * 359.48210 * 7 6 5 25 25 C 1.37970 * 119.01492 * 0.24862 * 24 7 6 26 26 N 1.31899 * 119.56213 * 254.99633 * 5 2 1 27 27 H 1.09001 * 109.47167 * 299.99871 * 1 2 3 28 28 H 1.09001 * 109.47221 * 60.00364 * 1 2 3 29 29 H 1.09003 * 109.47413 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46989 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.47217 * 299.99862 * 3 2 1 32 32 H 1.09003 * 109.47529 * 59.99899 * 3 2 1 33 33 H 1.09002 * 109.47242 * 299.99630 * 4 2 1 34 34 H 1.08994 * 109.47233 * 59.99997 * 4 2 1 35 35 H 1.08998 * 109.46686 * 180.02562 * 4 2 1 36 36 H 1.08007 * 120.49253 * 359.97438 * 6 5 2 37 37 H 1.08007 * 119.41508 * 359.97317 * 9 8 7 38 38 H 1.07995 * 119.90810 * 179.97438 * 10 9 8 39 39 H 0.96993 * 119.99761 * 180.02562 * 18 17 15 40 40 H 1.08006 * 120.13027 * 0.02562 * 23 8 7 41 41 H 1.08003 * 120.49213 * 180.27430 * 24 7 6 42 42 H 1.08005 * 119.55204 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0322 -0.7103 1.2305 6 6 1.9716 -2.0877 1.2939 7 6 2.4358 -2.7346 2.4426 8 6 2.3855 -4.2125 2.5577 9 6 1.8611 -4.9684 1.5050 10 6 1.7978 -6.3424 1.5762 11 6 2.2612 -7.0083 2.7118 12 6 2.1986 -8.4367 2.7919 13 7 2.1505 -9.5699 2.8547 14 6 2.8137 -6.2259 3.8206 15 6 3.2906 -6.8660 4.9809 16 1 2.8503 -7.7981 5.3030 17 6 4.3372 -6.2931 5.7180 18 7 4.5526 -6.6722 6.9497 19 14 5.4232 -4.9882 4.9388 20 1 4.9155 -3.6406 5.3013 21 1 6.8149 -5.1424 5.4336 22 1 5.4026 -5.1442 3.4621 23 6 2.8642 -4.8252 3.7050 24 6 2.9542 -1.9509 3.4778 25 6 2.9827 -0.5795 3.3292 26 7 2.5292 -0.0079 2.2301 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8901 32 1 1.6767 1.9564 0.8900 33 1 1.6766 -1.7490 -1.2493 34 1 1.6766 -0.2075 -2.1392 35 1 3.1299 -0.7216 -1.2490 36 1 1.5674 -2.6570 0.4699 37 1 1.4985 -4.4659 0.6203 38 1 1.3883 -6.9061 0.7511 39 1 5.2762 -6.2757 7.4596 40 1 3.2703 -4.2290 4.5088 41 1 3.3272 -2.4122 4.3804 42 1 3.3817 0.0342 4.1233 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244020626.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:50 Heat of formation + Delta-G solvation = 58.926793 kcal Electronic energy + Delta-G solvation = -23894.866575 eV Core-core repulsion = 20610.611262 eV Total energy + Delta-G solvation = -3284.255313 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.41303 -38.16116 -36.56894 -35.35135 -34.24977 -32.87142 -31.07046 -30.20566 -29.31044 -27.36659 -27.27756 -25.90620 -24.15747 -23.26169 -21.73174 -21.02128 -19.17918 -17.98790 -17.61292 -16.62972 -15.99813 -15.42577 -15.22544 -14.55601 -14.47362 -14.16065 -13.87942 -13.67177 -13.60382 -13.39374 -13.08048 -12.84435 -12.54475 -12.34720 -12.22923 -12.12620 -11.94356 -11.71663 -11.64360 -11.58608 -11.27346 -11.15333 -11.05213 -11.01616 -10.83600 -10.70465 -10.23449 -10.00672 -9.67226 -9.46179 -9.21911 -8.78267 -8.07359 -7.61132 -7.38468 -4.92699 0.94720 1.33301 2.19142 2.35796 2.82292 2.95862 3.05830 3.63086 3.75024 3.75275 4.19476 4.22770 4.31093 4.61212 4.90896 4.94833 5.01897 5.10873 5.11921 5.20035 5.30852 5.36718 5.51356 5.59135 5.59928 5.69768 5.72895 5.76640 5.79669 5.85437 5.97143 6.06944 6.10409 6.20204 6.23182 6.25568 6.28739 6.37597 6.54206 6.76870 6.85504 6.90947 7.16363 7.25867 7.43705 7.60991 7.88327 8.15005 8.18375 8.28881 8.63887 9.60453 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.016255 B = 0.004410 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.151223 B = 6348.196960 C = 7684.273332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.018 4.018 3 C -0.125 4.125 4 C -0.142 4.142 5 C 0.135 3.865 6 C -0.161 4.161 7 C 0.018 3.982 8 C 0.001 3.999 9 C -0.235 4.235 10 C -0.016 4.016 11 C -0.162 4.162 12 C 0.295 3.705 13 N -0.493 5.493 14 C 0.123 3.877 15 C -0.413 4.413 16 H 0.099 0.901 17 C 0.082 3.918 18 N -0.772 5.772 19 Si 0.906 3.094 20 H -0.261 1.261 21 H -0.281 1.281 22 H -0.236 1.236 23 C -0.207 4.207 24 C -0.177 4.177 25 C 0.099 3.901 26 N -0.490 5.490 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.137 0.863 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.295 0.705 40 H 0.113 0.887 41 H 0.136 0.864 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.408 15.149 -9.648 18.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.019 4.019 3 C -0.182 4.182 4 C -0.200 4.200 5 C -0.002 4.002 6 C -0.181 4.181 7 C 0.010 3.990 8 C 0.000 4.000 9 C -0.255 4.255 10 C -0.037 4.037 11 C -0.167 4.167 12 C -0.016 4.016 13 N -0.172 5.172 14 C 0.118 3.882 15 C -0.439 4.439 16 H 0.117 0.883 17 C -0.142 4.142 18 N -0.393 5.393 19 Si 0.730 3.270 20 H -0.186 1.186 21 H -0.208 1.208 22 H -0.158 1.158 23 C -0.227 4.227 24 C -0.197 4.197 25 C -0.057 4.057 26 N -0.199 5.199 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.155 0.845 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.131 0.869 41 H 0.154 0.846 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.316 14.251 -9.319 17.184 hybrid contribution 0.581 -0.088 0.248 0.638 sum -1.735 14.163 -9.071 16.908 Atomic orbital electron populations 1.21870 0.93346 1.02272 1.02000 1.19451 0.95667 0.95769 0.90971 1.21656 1.01108 0.94102 1.01377 1.21951 1.01413 1.00473 0.96117 1.20957 0.94867 0.90309 0.94110 1.22023 1.02322 0.94873 0.98881 1.19477 0.93133 0.93683 0.92718 1.18325 0.97853 0.89207 0.94634 1.20139 1.12829 0.93002 0.99534 1.20507 0.94641 0.93781 0.94776 1.16920 1.19043 0.83520 0.97256 1.25662 0.91576 0.92609 0.91746 1.81051 1.13387 1.12691 1.10062 1.18362 0.89370 0.90386 0.90121 1.19686 1.13315 1.07868 1.03026 0.88280 1.26379 0.97747 0.96469 0.93607 1.69585 1.26009 1.35851 1.07813 0.86384 0.78047 0.79692 0.82831 1.18649 1.20813 1.15829 1.21070 1.09297 0.94017 0.98268 1.22401 1.01778 0.95071 1.00419 1.22556 0.95966 0.92297 0.94903 1.67371 1.10838 1.40967 1.00761 0.92442 0.92044 0.92261 0.92707 0.93207 0.91724 0.92016 0.92007 0.92404 0.84519 0.87543 0.87388 0.89399 0.86919 0.84632 0.83042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.41 37.16 0.31 -1.00 16 2 C -0.02 -0.19 0.87 -155.66 -0.14 -0.33 16 3 C -0.12 -1.28 7.80 37.16 0.29 -0.99 16 4 C -0.14 -1.33 8.08 37.16 0.30 -1.03 16 5 C 0.14 1.85 5.56 -82.65 -0.46 1.39 16 6 C -0.16 -2.34 8.46 -39.09 -0.33 -2.67 16 7 C 0.02 0.29 5.91 -104.59 -0.62 -0.32 16 8 C 0.00 0.01 5.86 -105.03 -0.62 -0.60 16 9 C -0.24 -4.10 9.39 -39.18 -0.37 -4.47 16 10 C -0.02 -0.30 9.74 -39.27 -0.38 -0.68 16 11 C -0.16 -3.45 5.94 -104.14 -0.62 -4.07 16 12 C 0.29 6.62 14.36 -22.47 -0.32 6.30 16 13 N -0.49 -11.58 18.54 41.84 0.78 -10.81 16 14 C 0.12 2.79 5.26 -104.67 -0.55 2.24 16 15 C -0.41 -10.15 9.02 -37.85 -0.34 -10.49 16 16 H 0.10 2.66 7.66 -52.49 -0.40 2.26 16 17 C 0.08 1.93 5.42 -17.30 -0.09 1.84 16 18 N -0.77 -18.52 13.92 55.56 0.77 -17.74 16 19 Si 0.91 18.18 24.53 -169.99 -4.17 14.01 16 20 H -0.26 -4.80 6.08 56.52 0.34 -4.46 16 21 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 22 H -0.24 -4.87 6.85 56.52 0.39 -4.49 16 23 C -0.21 -4.30 6.55 -38.55 -0.25 -4.55 16 24 C -0.18 -2.81 9.48 -39.09 -0.37 -3.19 16 25 C 0.10 1.41 11.17 -17.61 -0.20 1.21 16 26 N -0.49 -7.15 9.00 -9.56 -0.09 -7.23 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 32 H 0.06 0.71 7.85 -51.93 -0.41 0.30 16 33 H 0.06 0.56 6.69 -51.93 -0.35 0.22 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.14 1.75 4.92 -52.48 -0.26 1.49 16 37 H 0.11 1.55 6.19 -52.48 -0.32 1.23 16 38 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.29 6.29 8.29 -40.82 -0.34 5.95 16 40 H 0.11 2.28 2.99 -52.48 -0.16 2.12 16 41 H 0.14 2.16 5.64 -52.48 -0.30 1.87 16 42 H 0.15 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 346.59 15.07 5.22 5.22 Total: -1.00 -25.83 346.59 -7.44 -33.27 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.20 Total: 4.69 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -4.75 Total: -21.41 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 1.46 Total: -35.79 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -4.17 Total: 14.01 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -25.83 -7.44 -33.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244020626.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.201 kcal (2) G-P(sol) polarization free energy of solvation -25.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds