Wall clock time and date at job start Tue Mar 31 2020 08:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47062 * 2 1 4 4 C 1.53003 * 109.46845 * 240.00035 * 2 1 3 5 5 C 1.50695 * 109.46837 * 119.99774 * 2 1 3 6 6 C 1.38015 * 119.55911 * 75.28306 * 5 2 1 7 7 C 1.39763 * 119.01766 * 180.24522 * 6 5 2 8 8 C 1.48331 * 120.91031 * 179.75480 * 7 6 5 9 9 C 1.39810 * 119.53690 * 359.71968 * 8 7 6 10 10 C 1.37728 * 121.17560 * 180.02562 * 9 8 7 11 11 C 1.39561 * 120.18576 * 359.97438 * 10 9 8 12 12 C 1.43197 * 120.45990 * 180.02562 * 11 10 9 13 13 N 9.75470 * 93.48315 * 93.80764 * 4 1 2 14 14 C 1.46524 * 119.09033 * 359.97438 * 11 10 9 15 15 C 1.40832 * 120.55969 * 180.02562 * 14 11 10 16 16 H 1.08001 * 119.99455 * 329.57603 * 15 14 11 17 17 C 1.40244 * 120.00297 * 149.57731 * 15 14 11 18 18 N 1.30657 * 119.99710 * 162.25814 * 17 15 14 19 19 Si 1.86796 * 119.99755 * 342.25697 * 17 15 14 20 20 H 1.48500 * 109.47247 * 95.42540 * 19 17 15 21 21 H 1.48506 * 109.46819 * 215.42162 * 19 17 15 22 22 H 1.48500 * 109.47311 * 335.42180 * 19 17 15 23 23 C 1.38589 * 119.53872 * 179.44533 * 8 7 6 24 24 C 1.39807 * 118.18368 * 359.48210 * 7 6 5 25 25 C 1.37970 * 119.01492 * 0.24862 * 24 7 6 26 26 N 1.31899 * 119.56213 * 254.99633 * 5 2 1 27 27 H 1.09001 * 109.47167 * 299.99871 * 1 2 3 28 28 H 1.09001 * 109.47221 * 60.00364 * 1 2 3 29 29 H 1.09003 * 109.47413 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46989 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.47217 * 299.99862 * 3 2 1 32 32 H 1.09003 * 109.47529 * 59.99899 * 3 2 1 33 33 H 1.09002 * 109.47242 * 299.99630 * 4 2 1 34 34 H 1.08994 * 109.47233 * 59.99997 * 4 2 1 35 35 H 1.08998 * 109.46686 * 180.02562 * 4 2 1 36 36 H 1.08007 * 120.49253 * 359.97438 * 6 5 2 37 37 H 1.08007 * 119.41508 * 359.97317 * 9 8 7 38 38 H 1.07995 * 119.90810 * 179.97438 * 10 9 8 39 39 H 0.96993 * 119.99761 * 180.02562 * 18 17 15 40 40 H 1.08006 * 120.13027 * 0.02562 * 23 8 7 41 41 H 1.08003 * 120.49213 * 180.27430 * 24 7 6 42 42 H 1.08005 * 119.55204 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0322 -0.7103 1.2305 6 6 1.9716 -2.0877 1.2939 7 6 2.4358 -2.7346 2.4426 8 6 2.3855 -4.2125 2.5577 9 6 1.8611 -4.9684 1.5050 10 6 1.7978 -6.3424 1.5762 11 6 2.2612 -7.0083 2.7118 12 6 2.1986 -8.4367 2.7919 13 7 2.1505 -9.5699 2.8547 14 6 2.8137 -6.2259 3.8206 15 6 3.2906 -6.8660 4.9809 16 1 2.8503 -7.7981 5.3030 17 6 4.3372 -6.2931 5.7180 18 7 4.5526 -6.6722 6.9497 19 14 5.4232 -4.9882 4.9388 20 1 4.9155 -3.6406 5.3013 21 1 6.8149 -5.1424 5.4336 22 1 5.4026 -5.1442 3.4621 23 6 2.8642 -4.8252 3.7050 24 6 2.9542 -1.9509 3.4778 25 6 2.9827 -0.5795 3.3292 26 7 2.5292 -0.0079 2.2301 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8901 32 1 1.6767 1.9564 0.8900 33 1 1.6766 -1.7490 -1.2493 34 1 1.6766 -0.2075 -2.1392 35 1 3.1299 -0.7216 -1.2490 36 1 1.5674 -2.6570 0.4699 37 1 1.4985 -4.4659 0.6203 38 1 1.3883 -6.9061 0.7511 39 1 5.2762 -6.2757 7.4596 40 1 3.2703 -4.2290 4.5088 41 1 3.3272 -2.4122 4.3804 42 1 3.3817 0.0342 4.1233 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244020626.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:49 Heat of formation + Delta-G solvation = 47.628575 kcal Electronic energy + Delta-G solvation = -23895.356503 eV Core-core repulsion = 20610.611262 eV Total energy + Delta-G solvation = -3284.745241 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.53224 -39.68064 -37.58390 -37.03336 -35.90399 -34.25852 -32.62739 -31.36341 -30.72146 -28.11240 -28.04629 -27.54710 -25.46212 -24.49983 -23.05354 -22.52385 -20.24620 -19.62945 -19.17590 -17.86018 -17.20477 -16.92844 -16.39482 -15.88726 -15.48493 -15.44371 -15.19912 -15.03076 -14.80385 -14.58080 -14.50449 -14.30976 -14.01410 -13.76408 -13.59308 -13.33238 -13.07098 -12.91177 -12.89451 -12.81934 -12.69265 -12.45553 -12.24553 -12.05478 -11.82227 -11.79783 -11.70036 -11.52171 -11.15840 -10.93788 -10.33263 -9.86079 -9.68605 -9.14158 -9.09563 -6.71889 -0.45034 0.22933 0.71893 0.80310 1.20744 1.35344 1.44696 1.94807 2.00593 2.23352 2.54855 2.93551 3.28835 3.42651 3.45008 3.59885 3.77195 4.08466 4.11884 4.17174 4.19341 4.24360 4.30125 4.47808 4.61157 4.73558 4.81685 4.83554 4.84921 4.88418 4.98383 5.02787 5.10028 5.11711 5.13382 5.21086 5.23039 5.30752 5.38293 5.50054 5.55530 5.61463 5.66561 5.82630 5.87879 5.97520 6.14183 6.44787 6.53897 6.85564 7.08611 7.95798 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.016255 B = 0.004410 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.151223 B = 6348.196960 C = 7684.273332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.019 4.019 3 C -0.122 4.122 4 C -0.141 4.141 5 C 0.133 3.867 6 C -0.156 4.156 7 C -0.006 4.006 8 C 0.007 3.993 9 C -0.213 4.213 10 C -0.009 4.009 11 C -0.179 4.179 12 C 0.301 3.699 13 N -0.520 5.520 14 C 0.118 3.882 15 C -0.458 4.458 16 H 0.055 0.945 17 C 0.053 3.947 18 N -0.819 5.819 19 Si 0.951 3.049 20 H -0.235 1.235 21 H -0.274 1.274 22 H -0.245 1.245 23 C -0.224 4.224 24 C -0.189 4.189 25 C 0.099 3.901 26 N -0.497 5.497 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.159 0.841 37 H 0.149 0.851 38 H 0.143 0.857 39 H 0.303 0.697 40 H 0.114 0.886 41 H 0.130 0.870 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.220 18.331 -13.129 22.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.020 4.020 3 C -0.179 4.179 4 C -0.198 4.198 5 C -0.004 4.004 6 C -0.175 4.175 7 C -0.014 4.014 8 C 0.006 3.994 9 C -0.232 4.232 10 C -0.030 4.030 11 C -0.185 4.185 12 C -0.009 4.009 13 N -0.199 5.199 14 C 0.113 3.887 15 C -0.486 4.486 16 H 0.073 0.927 17 C -0.166 4.166 18 N -0.442 5.442 19 Si 0.772 3.228 20 H -0.160 1.160 21 H -0.200 1.200 22 H -0.168 1.168 23 C -0.243 4.243 24 C -0.209 4.209 25 C -0.057 4.057 26 N -0.206 5.206 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.176 0.824 37 H 0.166 0.834 38 H 0.161 0.839 39 H 0.114 0.886 40 H 0.131 0.869 41 H 0.148 0.852 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -3.142 17.436 -12.798 21.856 hybrid contribution 0.671 -0.925 1.101 1.586 sum -2.471 16.512 -11.697 20.386 Atomic orbital electron populations 1.21868 0.92232 1.02605 1.02574 1.19597 0.96457 0.95791 0.90178 1.21629 1.00424 0.93999 1.01894 1.21962 1.00925 1.00898 0.96063 1.21518 0.93763 0.90384 0.94780 1.22219 1.01508 0.95339 0.98469 1.19465 0.95196 0.92506 0.94247 1.18636 0.96059 0.90803 0.93929 1.20675 1.09839 0.92648 1.00056 1.20897 0.93351 0.94426 0.94314 1.17240 1.19904 0.82964 0.98407 1.25986 0.90908 0.92990 0.91000 1.81028 1.14462 1.13495 1.10936 1.18489 0.89055 0.91479 0.89706 1.19531 1.15941 1.07472 1.05620 0.92680 1.26998 0.98053 0.97928 0.93668 1.69611 1.27533 1.38078 1.08970 0.85714 0.76932 0.78873 0.81263 1.15952 1.20033 1.16834 1.21098 1.10562 0.93045 0.99593 1.22477 1.02260 0.95878 1.00267 1.22947 0.95311 0.91952 0.95466 1.67486 1.10813 1.41269 1.01062 0.93538 0.89894 0.92041 0.93720 0.91058 0.92885 0.91447 0.89964 0.93216 0.82407 0.83386 0.83891 0.88570 0.86861 0.85230 0.80547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.41 71.98 0.61 -1.43 16 2 C -0.02 -0.34 0.87 -52.93 -0.05 -0.39 16 3 C -0.12 -2.10 7.80 71.98 0.56 -1.53 16 4 C -0.14 -2.01 8.08 71.98 0.58 -1.43 16 5 C 0.13 3.19 5.56 42.49 0.24 3.43 16 6 C -0.16 -3.91 8.46 22.59 0.19 -3.71 16 7 C -0.01 -0.20 5.91 -19.84 -0.12 -0.31 16 8 C 0.01 0.23 5.86 -20.13 -0.12 0.11 16 9 C -0.21 -6.52 9.39 22.53 0.21 -6.31 16 10 C -0.01 -0.32 9.74 22.47 0.22 -0.10 16 11 C -0.18 -7.61 5.94 -19.55 -0.12 -7.73 16 12 C 0.30 13.79 14.36 88.33 1.27 15.06 16 13 N -0.52 -25.06 18.54 19.00 0.35 -24.71 16 14 C 0.12 5.46 5.26 -19.90 -0.10 5.36 16 15 C -0.46 -24.05 9.02 23.39 0.21 -23.84 16 16 H 0.05 3.26 7.66 -2.91 -0.02 3.24 16 17 C 0.05 2.62 5.42 85.36 0.46 3.09 16 18 N -0.82 -41.72 13.92 21.88 0.30 -41.41 16 19 Si 0.95 37.87 24.53 68.60 1.68 39.55 16 20 H -0.24 -8.26 6.08 99.48 0.60 -7.66 16 21 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 22 H -0.25 -9.99 6.85 99.48 0.68 -9.31 16 23 C -0.22 -9.16 6.55 22.94 0.15 -9.01 16 24 C -0.19 -5.62 9.48 22.59 0.21 -5.40 16 25 C 0.10 2.57 11.17 84.62 0.95 3.51 16 26 N -0.50 -13.10 9.00 -184.16 -1.66 -14.75 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.90 8.09 -2.39 -0.02 0.88 16 30 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.05 1.03 7.85 -2.39 -0.02 1.01 16 33 H 0.07 0.89 6.69 -2.39 -0.02 0.87 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.16 3.16 4.92 -2.91 -0.01 3.15 16 37 H 0.15 3.36 6.19 -2.91 -0.02 3.34 16 38 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 39 H 0.30 13.64 8.29 -92.71 -0.77 12.87 16 40 H 0.11 4.57 2.99 -2.91 -0.01 4.56 16 41 H 0.13 3.96 5.64 -2.91 -0.02 3.94 16 42 H 0.18 3.53 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -59.48 346.59 6.96 -52.52 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.93 Total: 19.46 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 5.36 Total: -30.64 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -1.00 Total: -80.88 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 1.68 Total: 39.55 kcal Total: -59.48 6.96 -52.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244020626.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.144 kcal (2) G-P(sol) polarization free energy of solvation -59.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds