Wall clock time and date at job start Tue Mar 31 2020 08:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37916 * 120.46870 * 2 1 4 4 N 1.31988 * 120.83976 * 180.30475 * 3 2 1 5 5 C 1.32011 * 121.91192 * 359.71502 * 4 3 2 6 6 C 1.37875 * 120.83890 * 359.97438 * 5 4 3 7 7 N 1.48007 * 120.45908 * 180.02562 * 6 5 4 8 8 O 1.21792 * 120.00170 * 5.16039 * 7 6 5 9 9 O 1.21799 * 119.99885 * 185.16064 * 7 6 5 10 10 C 1.39455 * 120.46622 * 179.72061 * 2 1 3 11 11 N 1.39170 * 120.86491 * 359.97438 * 10 2 1 12 12 C 1.46962 * 110.99813 * 68.92202 * 11 10 2 13 13 C 1.53045 * 109.38258 * 176.82643 * 12 11 10 14 14 N 1.46951 * 109.36793 * 58.38732 * 13 12 11 15 15 C 1.46905 * 110.99963 * 176.81433 * 14 13 12 16 16 C 1.50705 * 109.47155 * 189.99968 * 15 14 13 17 17 H 1.07998 * 119.99692 * 0.02562 * 16 15 14 18 18 C 1.37868 * 120.00019 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00161 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99973 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47312 * 90.00220 * 20 18 16 22 22 H 1.48505 * 109.47225 * 210.00296 * 20 18 16 23 23 H 1.48498 * 109.47190 * 330.00361 * 20 18 16 24 24 C 1.46957 * 110.88075 * 300.68016 * 14 13 12 25 25 C 1.46950 * 111.01999 * 305.11392 * 11 10 2 26 26 H 1.08993 * 109.47451 * 276.50517 * 1 2 3 27 27 H 1.09006 * 109.46449 * 36.50582 * 1 2 3 28 28 H 1.09003 * 109.47021 * 156.49814 * 1 2 3 29 29 H 1.07995 * 119.58262 * 0.02562 * 3 2 1 30 30 H 1.07995 * 119.57677 * 180.02562 * 5 4 3 31 31 H 1.08995 * 109.48961 * 56.84398 * 12 11 10 32 32 H 1.09006 * 109.48697 * 296.79882 * 12 11 10 33 33 H 1.08997 * 109.49107 * 178.35954 * 13 12 11 34 34 H 1.09001 * 109.48346 * 298.41748 * 13 12 11 35 35 H 1.08996 * 109.46850 * 309.99717 * 15 14 13 36 36 H 1.08996 * 109.46993 * 69.99964 * 15 14 13 37 37 H 0.97002 * 119.99876 * 179.97438 * 19 18 16 38 38 H 1.08995 * 109.48939 * 179.28736 * 24 14 13 39 39 H 1.09002 * 109.48893 * 299.35318 * 24 14 13 40 40 H 1.09001 * 109.47702 * 63.19101 * 25 11 10 41 41 H 1.09002 * 109.50337 * 303.15442 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2063 1.1887 0.0000 4 7 3.5261 1.1973 -0.0060 5 6 4.2312 0.0812 -0.0067 6 6 3.6079 -1.1486 -0.0005 7 7 4.4067 -2.3946 -0.0008 8 8 5.6202 -2.3401 0.0885 9 8 3.8506 -3.4745 -0.0902 10 6 2.2141 -1.2020 0.0059 11 7 1.5464 -2.4231 0.0123 12 6 0.8603 -2.6549 -1.2664 13 6 0.2062 -4.0384 -1.2484 14 7 -0.7386 -4.1162 -0.1255 15 6 -1.4437 -5.4049 -0.1190 16 6 -2.5677 -5.3575 0.8838 17 1 -2.7411 -4.4597 1.4584 18 6 -3.3752 -6.4599 1.0668 19 7 -3.1643 -7.5530 0.3667 20 14 -4.7679 -6.4014 2.3103 21 1 -6.0042 -5.9156 1.6464 22 1 -5.0015 -7.7624 2.8564 23 1 -4.4054 -5.4795 3.4166 24 6 -0.0524 -3.8849 1.1533 25 6 0.6017 -2.5013 1.1352 26 1 -0.3634 0.1164 1.0210 27 1 -0.3632 0.8261 -0.6114 28 1 -0.3633 -0.9424 -0.4098 29 1 1.6672 2.1245 0.0004 30 1 5.3100 0.1322 -0.0113 31 1 1.5828 -2.6048 -2.0810 32 1 0.0948 -1.8927 -1.4119 33 1 -0.3277 -4.2006 -2.1847 34 1 0.9747 -4.8024 -1.1306 35 1 -1.8500 -5.6017 -1.1111 36 1 -0.7477 -6.1985 0.1526 37 1 -3.7322 -8.3287 0.4957 38 1 -0.7749 -3.9349 1.9679 39 1 0.7131 -4.6472 1.2984 40 1 -0.1668 -1.7372 1.0175 41 1 1.1353 -2.3390 2.0717 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330354874.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:48 Heat of formation + Delta-G solvation = 76.802023 kcal Electronic energy + Delta-G solvation = -25964.744289 eV Core-core repulsion = 22270.414840 eV Total energy + Delta-G solvation = -3694.329448 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.31698 -41.08942 -39.02549 -36.42514 -35.79457 -33.55773 -32.86407 -31.73727 -30.72201 -28.82971 -27.59762 -26.59807 -25.01131 -23.31871 -22.87821 -22.41170 -21.59339 -19.71503 -18.93483 -18.64996 -17.68549 -17.44936 -16.98472 -16.38669 -15.51492 -15.19624 -14.92140 -14.67526 -14.47081 -14.29123 -14.17125 -13.66293 -13.43831 -13.21005 -12.90483 -12.27728 -12.20744 -11.89452 -11.42234 -11.33903 -11.15823 -11.05406 -10.94268 -10.92922 -10.86516 -10.59403 -10.51594 -10.28117 -10.26403 -9.85386 -9.64525 -9.26322 -8.58737 -8.46210 -7.35018 -6.07018 -4.09127 -0.38778 0.37128 1.23306 1.36769 2.93911 3.23812 3.28297 3.34855 3.37035 3.72107 3.96010 4.11153 4.24951 4.37180 4.60166 4.74842 4.83615 4.95456 5.13297 5.15424 5.18868 5.28845 5.37357 5.40732 5.45219 5.64383 5.67783 5.82291 5.90455 5.97092 6.31034 6.34278 6.47955 6.56349 6.72823 6.87257 7.09310 7.22036 7.31131 7.72162 7.76693 7.99720 8.10927 8.46020 8.97701 9.55371 11.03775 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.022255 B = 0.003758 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.867932 B = 7448.164991 C = 8136.737031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.166 4.166 3 C 0.148 3.852 4 N -0.476 5.476 5 C 0.167 3.833 6 C -0.084 4.084 7 N 0.031 4.969 8 O -0.196 6.196 9 O -0.090 6.090 10 C 0.210 3.790 11 N -0.496 5.496 12 C 0.063 3.937 13 C 0.057 3.943 14 N -0.538 5.538 15 C 0.194 3.806 16 C -0.510 4.510 17 H 0.062 0.938 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.897 3.103 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.069 3.931 25 C 0.043 3.957 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.174 0.826 30 H 0.183 0.817 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.031 0.969 36 H -0.005 1.005 37 H 0.262 0.738 38 H 0.093 0.907 39 H 0.037 0.963 40 H 0.069 0.931 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.067 17.393 -1.768 20.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.171 4.171 3 C -0.008 4.008 4 N -0.185 5.185 5 C 0.007 3.993 6 C -0.171 4.171 7 N 0.553 4.447 8 O -0.399 6.399 9 O -0.322 6.322 10 C 0.106 3.894 11 N -0.218 5.218 12 C -0.062 4.062 13 C -0.073 4.073 14 N -0.263 5.263 15 C 0.069 3.931 16 C -0.548 4.548 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.725 3.275 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.060 4.060 25 C -0.083 4.083 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.119 0.881 29 H 0.191 0.809 30 H 0.200 0.800 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.013 0.987 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.055 0.945 40 H 0.087 0.913 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.123 18.640 -1.792 21.287 hybrid contribution -0.851 -1.201 0.690 1.626 sum 9.272 17.439 -1.102 19.781 Atomic orbital electron populations 1.21380 0.88224 1.05554 1.03948 1.21868 0.99356 0.92943 1.02920 1.23123 0.89687 0.98241 0.89752 1.68146 1.08271 1.28208 1.13870 1.22784 1.02040 0.84746 0.89711 1.22465 0.91357 0.86806 1.16491 1.43205 1.00785 1.02332 0.98334 1.94518 0.95889 1.93867 1.55612 1.94678 1.73648 1.14621 1.49240 1.19005 0.90477 0.91136 0.88780 1.59847 1.31537 1.24551 1.05913 1.22433 0.96166 0.99413 0.88140 1.22062 0.94753 0.93956 0.96481 1.62352 1.25371 1.37816 1.00759 1.19711 0.92651 0.82822 0.97928 1.21112 1.13453 0.98821 1.21440 0.91968 1.24978 0.97792 0.95372 0.96353 1.69954 1.39333 1.03327 1.40942 0.86516 0.82373 0.77210 0.81384 1.20678 1.21296 1.19917 1.21980 0.96568 0.92911 0.94529 1.22817 0.93370 1.00849 0.91243 0.89523 0.90175 0.88106 0.80916 0.80012 0.90990 0.92296 0.90341 0.93920 0.95087 0.98710 0.92853 0.88930 0.94477 0.91334 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 7.89 36.00 0.28 -0.83 16 2 C -0.17 -1.58 5.65 -104.29 -0.59 -2.17 16 3 C 0.15 1.22 10.88 -17.60 -0.19 1.03 16 4 N -0.48 -4.71 10.36 -13.35 -0.14 -4.84 16 5 C 0.17 1.74 10.71 -17.61 -0.19 1.55 16 6 C -0.08 -1.06 6.88 -79.62 -0.55 -1.61 16 7 N 0.03 0.47 4.45 34.12 0.15 0.62 16 8 O -0.20 -2.95 18.48 -29.46 -0.54 -3.49 16 9 O -0.09 -1.53 17.26 -29.46 -0.51 -2.04 16 10 C 0.21 2.58 4.72 -83.61 -0.39 2.18 16 11 N -0.50 -6.94 2.72 -170.76 -0.46 -7.40 16 12 C 0.06 0.87 5.26 -3.77 -0.02 0.85 16 13 C 0.06 0.95 5.61 -3.77 -0.02 0.93 16 14 N -0.54 -10.64 4.70 -235.92 -1.11 -11.75 16 15 C 0.19 4.81 4.72 -4.97 -0.02 4.79 16 16 C -0.51 -13.62 8.47 -34.44 -0.29 -13.92 16 17 H 0.06 1.62 7.13 -52.49 -0.37 1.25 16 18 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.03 13.29 55.43 0.74 -25.29 16 20 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 C 0.07 1.25 5.43 -3.77 -0.02 1.23 16 25 C 0.04 0.61 5.09 -3.77 -0.02 0.59 16 26 H 0.09 0.67 7.58 -51.93 -0.39 0.27 16 27 H 0.08 0.49 8.13 -51.93 -0.42 0.06 16 28 H 0.10 1.06 3.32 -51.93 -0.17 0.89 16 29 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.18 1.56 7.62 -52.49 -0.40 1.16 16 31 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 32 H 0.06 0.74 5.07 -51.93 -0.26 0.48 16 33 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.82 8.03 -51.93 -0.42 0.41 16 36 H 0.00 -0.13 8.12 -51.93 -0.42 -0.56 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.09 1.79 6.79 -51.93 -0.35 1.43 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.88 4.05 -51.93 -0.21 0.67 16 41 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 LS Contribution 331.71 15.07 5.00 5.00 Total: -1.00 -30.38 331.71 -9.11 -39.49 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -5.09 Total: -2.31 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -2.12 Total: -3.91 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.82 Total: -48.67 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -1.05 Total: -5.53 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.38 -9.11 -39.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330354874.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.292 kcal (2) G-P(sol) polarization free energy of solvation -30.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds