Wall clock time and date at job start Tue Mar 31 2020 08:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37916 * 120.46870 * 2 1 4 4 N 1.31988 * 120.83976 * 180.30475 * 3 2 1 5 5 C 1.32011 * 121.91192 * 359.71502 * 4 3 2 6 6 C 1.37875 * 120.83890 * 359.97438 * 5 4 3 7 7 N 1.48007 * 120.45908 * 180.02562 * 6 5 4 8 8 O 1.21792 * 120.00170 * 5.16039 * 7 6 5 9 9 O 1.21799 * 119.99885 * 185.16064 * 7 6 5 10 10 C 1.39455 * 120.46622 * 179.72061 * 2 1 3 11 11 N 1.39170 * 120.86491 * 359.97438 * 10 2 1 12 12 C 1.46962 * 110.99813 * 68.92202 * 11 10 2 13 13 C 1.53045 * 109.38258 * 176.82643 * 12 11 10 14 14 N 1.46951 * 109.36793 * 58.38732 * 13 12 11 15 15 C 1.46905 * 110.99963 * 176.81433 * 14 13 12 16 16 C 1.50705 * 109.47155 * 189.99968 * 15 14 13 17 17 H 1.07998 * 119.99692 * 0.02562 * 16 15 14 18 18 C 1.37868 * 120.00019 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00161 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99973 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47312 * 90.00220 * 20 18 16 22 22 H 1.48505 * 109.47225 * 210.00296 * 20 18 16 23 23 H 1.48498 * 109.47190 * 330.00361 * 20 18 16 24 24 C 1.46957 * 110.88075 * 300.68016 * 14 13 12 25 25 C 1.46950 * 111.01999 * 305.11392 * 11 10 2 26 26 H 1.08993 * 109.47451 * 276.50517 * 1 2 3 27 27 H 1.09006 * 109.46449 * 36.50582 * 1 2 3 28 28 H 1.09003 * 109.47021 * 156.49814 * 1 2 3 29 29 H 1.07995 * 119.58262 * 0.02562 * 3 2 1 30 30 H 1.07995 * 119.57677 * 180.02562 * 5 4 3 31 31 H 1.08995 * 109.48961 * 56.84398 * 12 11 10 32 32 H 1.09006 * 109.48697 * 296.79882 * 12 11 10 33 33 H 1.08997 * 109.49107 * 178.35954 * 13 12 11 34 34 H 1.09001 * 109.48346 * 298.41748 * 13 12 11 35 35 H 1.08996 * 109.46850 * 309.99717 * 15 14 13 36 36 H 1.08996 * 109.46993 * 69.99964 * 15 14 13 37 37 H 0.97002 * 119.99876 * 179.97438 * 19 18 16 38 38 H 1.08995 * 109.48939 * 179.28736 * 24 14 13 39 39 H 1.09002 * 109.48893 * 299.35318 * 24 14 13 40 40 H 1.09001 * 109.47702 * 63.19101 * 25 11 10 41 41 H 1.09002 * 109.50337 * 303.15442 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2063 1.1887 0.0000 4 7 3.5261 1.1973 -0.0060 5 6 4.2312 0.0812 -0.0067 6 6 3.6079 -1.1486 -0.0005 7 7 4.4067 -2.3946 -0.0008 8 8 5.6202 -2.3401 0.0885 9 8 3.8506 -3.4745 -0.0902 10 6 2.2141 -1.2020 0.0059 11 7 1.5464 -2.4231 0.0123 12 6 0.8603 -2.6549 -1.2664 13 6 0.2062 -4.0384 -1.2484 14 7 -0.7386 -4.1162 -0.1255 15 6 -1.4437 -5.4049 -0.1190 16 6 -2.5677 -5.3575 0.8838 17 1 -2.7411 -4.4597 1.4584 18 6 -3.3752 -6.4599 1.0668 19 7 -3.1643 -7.5530 0.3667 20 14 -4.7679 -6.4014 2.3103 21 1 -6.0042 -5.9156 1.6464 22 1 -5.0015 -7.7624 2.8564 23 1 -4.4054 -5.4795 3.4166 24 6 -0.0524 -3.8849 1.1533 25 6 0.6017 -2.5013 1.1352 26 1 -0.3634 0.1164 1.0210 27 1 -0.3632 0.8261 -0.6114 28 1 -0.3633 -0.9424 -0.4098 29 1 1.6672 2.1245 0.0004 30 1 5.3100 0.1322 -0.0113 31 1 1.5828 -2.6048 -2.0810 32 1 0.0948 -1.8927 -1.4119 33 1 -0.3277 -4.2006 -2.1847 34 1 0.9747 -4.8024 -1.1306 35 1 -1.8500 -5.6017 -1.1111 36 1 -0.7477 -6.1985 0.1526 37 1 -3.7322 -8.3287 0.4957 38 1 -0.7749 -3.9349 1.9679 39 1 0.7131 -4.6472 1.2984 40 1 -0.1668 -1.7372 1.0175 41 1 1.1353 -2.3390 2.0717 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330354874.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:48 Heat of formation + Delta-G solvation = 57.022242 kcal Electronic energy + Delta-G solvation = -25965.602004 eV Core-core repulsion = 22270.414840 eV Total energy + Delta-G solvation = -3695.187164 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.33794 -42.07593 -40.15564 -37.64118 -37.13997 -34.77340 -34.32667 -32.95867 -32.03763 -30.08188 -28.79929 -27.79694 -26.50212 -24.66006 -23.99061 -23.32273 -23.20826 -21.04034 -19.94760 -19.72275 -18.65062 -18.54978 -18.43326 -17.90030 -16.86775 -16.33622 -16.17814 -16.07472 -15.60236 -15.37298 -15.20086 -14.99548 -14.92306 -14.07374 -13.94890 -13.73082 -13.50723 -13.19051 -12.88604 -12.77021 -12.59582 -12.57264 -12.34628 -12.21610 -12.17083 -12.15950 -12.13855 -11.67686 -11.27313 -11.20485 -11.10794 -10.60037 -10.39382 -9.60882 -9.08226 -8.18794 -6.29173 -1.35216 -0.43585 0.19765 0.37200 1.43445 1.44659 1.55338 2.16531 2.23617 2.41512 3.03096 3.12652 3.13682 3.21510 3.32690 3.45368 3.74940 3.92411 3.99263 4.07675 4.14534 4.23913 4.30558 4.42706 4.55365 4.60554 4.62446 4.86183 4.87580 4.89213 4.94075 4.98590 5.19513 5.21356 5.24519 5.32848 5.60384 5.65569 5.84690 6.04037 6.26666 6.33652 6.56027 6.56396 6.86540 7.40771 8.92705 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.022255 B = 0.003758 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.867932 B = 7448.164991 C = 8136.737031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.157 4.157 3 C 0.168 3.832 4 N -0.479 5.479 5 C 0.175 3.825 6 C -0.100 4.100 7 N 0.036 4.964 8 O -0.184 6.184 9 O -0.154 6.154 10 C 0.193 3.807 11 N -0.512 5.512 12 C 0.075 3.925 13 C 0.056 3.944 14 N -0.531 5.531 15 C 0.207 3.793 16 C -0.520 4.520 17 H 0.069 0.931 18 C 0.001 3.999 19 N -0.937 5.937 20 Si 0.970 3.030 21 H -0.272 1.272 22 H -0.287 1.287 23 H -0.261 1.261 24 C 0.071 3.929 25 C 0.056 3.944 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.077 0.923 29 H 0.217 0.783 30 H 0.198 0.802 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.019 0.981 35 H 0.007 0.993 36 H -0.043 1.043 37 H 0.263 0.737 38 H 0.080 0.920 39 H 0.009 0.991 40 H 0.091 0.909 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.428 21.559 -1.122 23.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.162 4.162 3 C 0.012 3.988 4 N -0.188 5.188 5 C 0.016 3.984 6 C -0.188 4.188 7 N 0.552 4.448 8 O -0.394 6.394 9 O -0.372 6.372 10 C 0.089 3.911 11 N -0.235 5.235 12 C -0.050 4.050 13 C -0.073 4.073 14 N -0.255 5.255 15 C 0.081 3.919 16 C -0.558 4.558 17 H 0.087 0.913 18 C -0.197 4.197 19 N -0.577 5.577 20 Si 0.794 3.206 21 H -0.197 1.197 22 H -0.213 1.213 23 H -0.185 1.185 24 C -0.057 4.057 25 C -0.069 4.069 26 H 0.116 0.884 27 H 0.130 0.870 28 H 0.095 0.905 29 H 0.234 0.766 30 H 0.215 0.785 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.037 0.963 35 H 0.025 0.975 36 H -0.026 1.026 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.028 0.972 40 H 0.109 0.891 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.433 22.751 -1.157 24.657 hybrid contribution -0.540 -2.332 0.456 2.437 sum 8.893 20.419 -0.701 22.283 Atomic orbital electron populations 1.21387 0.86950 1.05501 1.05111 1.22008 1.00061 0.92089 1.02032 1.23805 0.89108 0.99291 0.86595 1.68296 1.09153 1.27339 1.13999 1.23069 1.02905 0.83936 0.88450 1.22635 0.91413 0.85897 1.18820 1.43580 1.00820 1.03025 0.97359 1.94470 0.96660 1.94101 1.54181 1.94696 1.73726 1.16155 1.52592 1.19055 0.90296 0.91218 0.90535 1.59594 1.31532 1.26779 1.05556 1.22286 0.96684 0.97313 0.88668 1.22111 0.93718 0.95960 0.95481 1.62284 1.26483 1.34329 1.02439 1.19369 0.92118 0.84225 0.96171 1.21440 1.13673 0.99103 1.21587 0.91267 1.25927 1.00576 0.94878 0.98347 1.70101 1.40685 1.04153 1.42772 0.85375 0.78925 0.77298 0.78961 1.19742 1.21311 1.18532 1.21930 0.95524 0.95065 0.93212 1.22639 0.93965 0.98255 0.92037 0.88388 0.87017 0.90461 0.76627 0.78520 0.90150 0.90172 0.89994 0.96302 0.97464 1.02553 0.92780 0.90195 0.97218 0.89103 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 7.89 71.24 0.56 -1.03 16 2 C -0.16 -2.36 5.65 -19.65 -0.11 -2.47 16 3 C 0.17 1.91 10.88 84.59 0.92 2.83 16 4 N -0.48 -7.47 10.36 -196.16 -2.03 -9.50 16 5 C 0.18 3.18 10.71 84.58 0.91 4.09 16 6 C -0.10 -2.38 6.88 36.59 0.25 -2.13 16 7 N 0.04 1.09 4.45 -45.96 -0.20 0.89 16 8 O -0.18 -5.48 18.48 18.90 0.35 -5.13 16 9 O -0.15 -5.53 17.26 18.89 0.33 -5.21 16 10 C 0.19 4.35 4.72 38.57 0.18 4.53 16 11 N -0.51 -14.14 2.72 -694.17 -1.89 -16.03 16 12 C 0.08 2.03 5.26 86.31 0.45 2.49 16 13 C 0.06 1.99 5.61 86.31 0.48 2.47 16 14 N -0.53 -21.87 4.70 -900.30 -4.23 -26.10 16 15 C 0.21 10.91 4.72 85.56 0.40 11.32 16 16 C -0.52 -28.49 8.47 25.60 0.22 -28.27 16 17 H 0.07 3.62 7.13 -2.91 -0.02 3.60 16 18 C 0.00 0.04 5.46 84.65 0.46 0.50 16 19 N -0.94 -56.18 13.29 21.44 0.28 -55.90 16 20 Si 0.97 43.16 29.54 68.60 2.03 45.19 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 24 C 0.07 2.70 5.43 86.31 0.47 3.16 16 25 C 0.06 1.57 5.09 86.31 0.44 2.01 16 26 H 0.10 1.02 7.58 -2.39 -0.02 1.01 16 27 H 0.11 0.69 8.13 -2.38 -0.02 0.68 16 28 H 0.08 1.36 3.32 -2.39 -0.01 1.35 16 29 H 0.22 0.61 8.06 -2.91 -0.02 0.58 16 30 H 0.20 2.86 7.62 -2.91 -0.02 2.84 16 31 H 0.08 2.05 8.13 -2.39 -0.02 2.03 16 32 H 0.08 1.86 5.07 -2.38 -0.01 1.84 16 33 H 0.08 2.80 8.07 -2.39 -0.02 2.78 16 34 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.01 0.41 8.03 -2.39 -0.02 0.39 16 36 H -0.04 -2.56 8.12 -2.39 -0.02 -2.58 16 37 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 38 H 0.08 3.18 6.79 -2.39 -0.02 3.16 16 39 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.09 2.13 4.05 -2.39 -0.01 2.12 16 41 H 0.08 2.06 8.13 -2.39 -0.02 2.04 16 Total: -1.00 -69.80 331.71 1.33 -68.47 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: 1.06 Total: 3.83 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 5.64 Total: -0.51 kcal Atomic # 7 Polarization: -98.57 SS G_CDS: -8.07 Total: -106.64 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.68 Total: -10.34 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -69.80 1.33 -68.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330354874.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.495 kcal (2) G-P(sol) polarization free energy of solvation -69.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds