Wall clock time and date at job start Tue Mar 31 2020 08:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31803 * 119.07913 * 2 1 4 4 C 1.32503 * 120.98875 * 180.02562 * 3 2 1 5 5 C 1.38214 * 119.18631 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.83095 * 179.97438 * 5 4 3 7 7 C 1.39505 * 118.33502 * 359.97438 * 5 4 3 8 8 N 1.39009 * 120.51989 * 180.02562 * 7 5 4 9 9 C 1.34774 * 119.99762 * 180.02562 * 8 7 5 10 10 O 1.21574 * 120.00341 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99839 * 180.02562 * 9 8 7 12 12 C 1.47421 * 125.64959 * 359.95458 * 11 9 8 13 13 C 1.55123 * 104.94432 * 204.03808 * 12 11 9 14 14 C 1.55157 * 101.48592 * 323.22536 * 13 12 11 15 15 O 1.42896 * 110.71819 * 276.82602 * 14 13 12 16 16 C 1.50701 * 110.72104 * 153.73232 * 14 13 12 17 17 H 1.08004 * 119.99515 * 7.33871 * 16 14 13 18 18 C 1.37872 * 120.00243 * 187.06088 * 16 14 13 19 19 N 1.31518 * 119.99862 * 354.78424 * 18 16 14 20 20 Si 1.86793 * 120.00308 * 174.77858 * 18 16 14 21 21 H 1.48500 * 109.47225 * 94.98024 * 20 18 16 22 22 H 1.48504 * 109.47575 * 214.97971 * 20 18 16 23 23 H 1.48500 * 109.47175 * 334.97780 * 20 18 16 24 24 C 1.47021 * 125.64821 * 179.97438 * 11 9 8 25 25 N 1.31743 * 119.08921 * 180.29798 * 2 1 3 26 26 H 1.08999 * 109.46823 * 90.00299 * 1 2 3 27 27 H 1.09003 * 109.46534 * 209.99732 * 1 2 3 28 28 H 1.08995 * 109.47829 * 329.99846 * 1 2 3 29 29 H 1.07999 * 120.40926 * 179.97438 * 4 3 2 30 30 H 1.08992 * 109.47878 * 270.02241 * 6 5 4 31 31 H 1.09005 * 109.47225 * 30.02426 * 6 5 4 32 32 H 1.09006 * 109.46751 * 150.01748 * 6 5 4 33 33 H 0.96997 * 120.00085 * 0.02562 * 8 7 5 34 34 H 1.08997 * 110.36910 * 323.00159 * 12 11 9 35 35 H 1.09000 * 110.36307 * 85.32709 * 12 11 9 36 36 H 1.08994 * 111.16598 * 205.12911 * 13 12 11 37 37 H 1.09000 * 110.93153 * 81.21576 * 13 12 11 38 38 H 0.96704 * 114.00113 * 171.20090 * 15 14 13 39 39 H 0.97002 * 120.00243 * 179.97438 * 19 18 16 40 40 H 1.08996 * 109.88877 * 59.48222 * 24 11 9 41 41 H 1.09004 * 110.01000 * 298.39109 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1476 1.1519 0.0000 4 6 3.4719 1.1960 -0.0005 5 6 4.1857 0.0125 -0.0016 6 6 5.6926 0.0195 -0.0028 7 6 3.4762 -1.1887 -0.0015 8 7 4.1483 -2.4055 -0.0021 9 6 3.4523 -3.5596 -0.0025 10 8 2.2368 -3.5365 -0.0030 11 7 4.1039 -4.7395 -0.0025 12 6 5.5679 -4.9125 -0.0030 13 6 5.8044 -6.3189 -0.6133 14 6 4.6059 -7.1138 -0.0310 15 8 4.8996 -7.5765 1.2888 16 6 4.2441 -8.2678 -0.9302 17 1 4.8721 -8.5121 -1.7742 18 6 3.1146 -9.0151 -0.6721 19 7 2.4096 -8.7874 0.4146 20 14 2.5855 -10.3508 -1.8658 21 1 3.1236 -11.6593 -1.4148 22 1 1.1025 -10.4148 -1.9116 23 1 3.1095 -10.0403 -3.2201 24 6 3.4723 -6.0671 -0.0025 25 7 2.1475 -1.1512 -0.0060 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3632 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 3.9872 2.1452 -0.0009 30 1 6.0553 0.0220 -1.0306 31 1 6.0523 0.9107 0.5116 32 1 6.0605 -0.8693 0.5102 33 1 5.1181 -2.4239 -0.0021 34 1 6.0402 -4.1467 -0.6182 35 1 5.9547 -4.8741 1.0154 36 1 6.7522 -6.7393 -0.2775 37 1 5.7580 -6.2838 -1.7017 38 1 4.1408 -7.9609 1.7487 39 1 1.6147 -9.3129 0.5960 40 1 2.8430 -6.1784 -0.8854 41 1 2.8723 -6.1947 0.8986 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365059463.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:01 Heat of formation + Delta-G solvation = -37.103704 kcal Electronic energy + Delta-G solvation = -25429.721387 eV Core-core repulsion = 21730.452616 eV Total energy + Delta-G solvation = -3699.268771 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.48156 -41.16269 -39.26028 -36.81684 -36.12429 -35.02654 -34.25596 -33.31979 -31.56803 -31.08908 -29.62287 -27.37689 -26.68089 -25.50199 -24.11690 -22.97948 -21.58693 -21.40796 -19.71607 -19.02715 -18.67686 -18.01015 -17.33086 -17.03264 -16.36032 -16.24703 -16.13817 -15.62694 -15.23554 -15.07708 -14.79209 -14.72153 -14.29208 -14.15667 -13.98137 -13.50341 -13.41820 -13.28499 -13.22503 -13.14670 -12.87189 -12.60138 -12.56118 -12.35759 -12.27523 -12.10469 -11.83104 -11.41776 -11.20991 -10.94926 -10.67192 -10.31301 -10.00766 -9.79110 -9.43308 -8.28276 -6.42670 -0.12678 0.17755 1.20225 1.40192 1.42793 1.52064 1.99039 2.36286 2.59597 2.81474 2.99488 3.09461 3.30007 3.58767 3.75243 3.95035 3.99378 4.10140 4.14354 4.32310 4.40996 4.53643 4.66065 4.66492 4.70214 4.80393 4.91863 4.93489 5.00671 5.08642 5.12434 5.16576 5.21735 5.30280 5.45445 5.57688 5.65227 5.73068 6.05751 6.16809 6.63103 6.77149 7.19089 7.25528 7.35237 7.41768 8.78270 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.021583 B = 0.003625 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.001448 B = 7721.934124 C = 8593.533203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.317 3.683 3 N -0.551 5.551 4 C 0.167 3.833 5 C -0.225 4.225 6 C -0.100 4.100 7 C 0.396 3.604 8 N -0.645 5.645 9 C 0.700 3.300 10 O -0.579 6.579 11 N -0.628 5.628 12 C 0.100 3.900 13 C -0.109 4.109 14 C 0.234 3.766 15 O -0.586 6.586 16 C -0.557 4.557 17 H 0.068 0.932 18 C 0.027 3.973 19 N -0.914 5.914 20 Si 0.960 3.040 21 H -0.273 1.273 22 H -0.287 1.287 23 H -0.266 1.266 24 C 0.142 3.858 25 N -0.554 5.554 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.215 0.785 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.430 0.570 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.374 0.626 39 H 0.269 0.731 40 H 0.031 0.969 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.489 19.001 -1.160 20.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.049 3.951 3 N -0.269 5.269 4 C 0.003 3.997 5 C -0.234 4.234 6 C -0.158 4.158 7 C 0.155 3.845 8 N -0.297 5.297 9 C 0.401 3.599 10 O -0.454 6.454 11 N -0.366 5.366 12 C -0.021 4.021 13 C -0.147 4.147 14 C 0.193 3.807 15 O -0.394 6.394 16 C -0.596 4.596 17 H 0.087 0.913 18 C -0.174 4.174 19 N -0.553 5.553 20 Si 0.785 3.215 21 H -0.198 1.198 22 H -0.213 1.213 23 H -0.190 1.190 24 C 0.018 3.982 25 N -0.275 5.275 26 H 0.111 0.889 27 H 0.090 0.910 28 H 0.123 0.877 29 H 0.231 0.769 30 H 0.110 0.890 31 H 0.123 0.877 32 H 0.088 0.912 33 H 0.273 0.727 34 H 0.124 0.876 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.223 0.777 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 7.056 19.092 -1.220 20.390 hybrid contribution -0.248 -1.588 -0.208 1.620 sum 6.807 17.504 -1.428 18.836 Atomic orbital electron populations 1.20577 0.84605 1.04208 1.04374 1.23583 0.99185 0.82409 0.89927 1.68313 1.11285 1.29292 1.17977 1.23669 0.88604 0.98934 0.88477 1.21445 1.00865 0.91558 1.09507 1.20724 0.85820 1.04934 1.04280 1.18703 0.88827 0.85747 0.91195 1.42557 1.10777 1.01745 1.74589 1.15808 0.84961 0.80219 0.78884 1.90996 1.12853 1.85575 1.55944 1.47979 1.09014 1.04073 1.75533 1.22590 0.78724 0.98846 1.01980 1.22755 0.98678 0.92971 1.00266 1.19730 0.89904 0.89636 0.81408 1.86105 1.40990 1.81945 1.30319 1.21836 1.09741 1.14920 1.13057 0.91345 1.25795 0.95962 0.99090 0.96580 1.69796 1.17872 1.41640 1.26019 0.85511 0.77160 0.79231 0.79591 1.19821 1.21296 1.19005 1.22404 0.97226 0.79960 0.98565 1.68256 1.08799 1.31641 1.18783 0.88948 0.91024 0.87682 0.76896 0.89009 0.87661 0.91231 0.72744 0.87589 0.90392 0.88694 0.89716 0.77655 0.92162 0.95074 0.95243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.98 10.32 71.24 0.73 -1.24 16 2 C 0.32 9.74 7.64 138.76 1.06 10.80 16 3 N -0.55 -14.14 10.33 -188.06 -1.94 -16.08 16 4 C 0.17 3.15 11.00 84.59 0.93 4.08 16 5 C -0.23 -4.51 5.93 -19.57 -0.12 -4.63 16 6 C -0.10 -0.97 9.65 71.23 0.69 -0.29 16 7 C 0.40 12.07 7.44 132.99 0.99 13.06 16 8 N -0.64 -19.29 5.27 -321.76 -1.69 -20.99 16 9 C 0.70 28.82 8.45 179.05 1.51 30.33 16 10 O -0.58 -29.65 14.96 -3.95 -0.06 -29.71 16 11 N -0.63 -25.25 3.33 -829.36 -2.76 -28.01 16 12 C 0.10 2.99 6.57 86.93 0.57 3.57 16 13 C -0.11 -3.89 6.25 32.06 0.20 -3.69 16 14 C 0.23 11.05 0.84 -10.35 -0.01 11.04 16 15 O -0.59 -28.95 13.09 -148.98 -1.95 -30.90 16 16 C -0.56 -28.96 8.13 25.60 0.21 -28.75 16 17 H 0.07 3.44 7.79 -2.91 -0.02 3.42 16 18 C 0.03 1.42 5.25 84.65 0.44 1.86 16 19 N -0.91 -50.12 11.05 21.45 0.24 -49.89 16 20 Si 0.96 42.24 29.54 68.60 2.03 44.26 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 22 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 24 C 0.14 7.04 5.23 86.73 0.45 7.49 16 25 N -0.55 -20.46 7.93 -185.21 -1.47 -21.93 16 26 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 30 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.10 0.49 8.10 -2.38 -0.02 0.47 16 32 H 0.07 0.63 6.67 -2.38 -0.02 0.62 16 33 H 0.43 8.92 5.31 -92.71 -0.49 8.43 16 34 H 0.11 2.14 7.30 -2.39 -0.02 2.13 16 35 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.08 2.90 8.04 -2.39 -0.02 2.89 16 38 H 0.37 19.52 7.44 -74.05 -0.55 18.97 16 39 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 40 H 0.03 1.72 7.80 -2.39 -0.02 1.70 16 41 H 0.03 1.63 7.87 -2.39 -0.02 1.61 16 Total: -1.00 -75.85 341.05 0.09 -75.76 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: 0.03 Total: 33.86 kcal Atomic # 6 Polarization: 35.95 SS G_CDS: 7.67 Total: 43.62 kcal Atomic # 7 Polarization: -129.27 SS G_CDS: -7.63 Total: -136.89 kcal Atomic # 8 Polarization: -58.60 SS G_CDS: -2.01 Total: -60.61 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -75.85 0.09 -75.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365059463.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.658 kcal (2) G-P(sol) polarization free energy of solvation -75.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds