Wall clock time and date at job start Tue Mar 31 2020 09:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47154 * 2 1 4 4 H 1.09005 * 109.47373 * 54.99946 * 3 2 1 5 5 N 1.46502 * 109.47399 * 295.00327 * 3 2 1 6 6 C 1.34773 * 119.99998 * 84.99604 * 5 3 2 7 7 O 1.21574 * 120.00227 * 0.02562 * 6 5 3 8 8 N 1.34783 * 119.99800 * 180.02562 * 6 5 3 9 9 C 1.39457 * 120.00067 * 175.14919 * 8 6 5 10 10 C 1.38641 * 119.64817 * 185.22691 * 9 8 6 11 11 C 1.40826 * 118.67157 * 179.97438 * 10 9 8 12 12 C 1.41547 * 120.99245 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99496 * 149.49154 * 12 11 10 14 14 C 1.40032 * 120.00416 * 329.49275 * 12 11 10 15 15 N 1.30736 * 120.00010 * 167.68815 * 14 12 11 16 16 Si 1.86800 * 119.99613 * 347.68210 * 14 12 11 17 17 H 1.48498 * 109.46798 * 92.44589 * 16 14 12 18 18 H 1.48502 * 109.47026 * 212.44012 * 16 14 12 19 19 H 1.48497 * 109.47482 * 332.44286 * 16 14 12 20 20 C 1.41158 * 118.00690 * 359.97438 * 11 10 9 21 21 C 1.36590 * 119.12886 * 0.02562 * 20 11 10 22 22 N 1.32069 * 121.25807 * 359.73653 * 21 20 11 23 23 C 1.50693 * 109.47290 * 174.99893 * 3 2 1 24 24 O 1.21282 * 120.00128 * 119.72625 * 23 3 2 25 25 N 1.34782 * 120.00345 * 300.00437 * 23 3 2 26 26 C 1.46496 * 120.00356 * 179.72511 * 25 23 3 27 27 H 1.09004 * 109.46818 * 299.99721 * 1 2 3 28 28 H 1.08998 * 109.46810 * 59.99629 * 1 2 3 29 29 H 1.09000 * 109.47071 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47150 * 240.00239 * 2 1 3 31 31 H 1.08994 * 109.47242 * 119.99751 * 2 1 3 32 32 H 0.97000 * 119.99434 * 264.99888 * 5 3 2 33 33 H 0.96996 * 119.99589 * 355.15184 * 8 6 5 34 34 H 1.07996 * 120.66481 * 359.97438 * 10 9 8 35 35 H 0.96994 * 119.99812 * 180.02562 * 15 14 12 36 36 H 1.08000 * 120.43826 * 180.02562 * 20 11 10 37 37 H 1.08000 * 119.37268 * 180.02562 * 21 20 11 38 38 H 0.96999 * 119.99545 * 359.71854 * 25 23 3 39 39 H 1.08992 * 109.47174 * 179.97438 * 26 25 23 40 40 H 1.09001 * 109.46531 * 299.99773 * 26 25 23 41 41 H 1.08999 * 109.47233 * 59.99468 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6525 2.0976 -1.2518 6 6 0.4352 2.6644 -1.3669 7 8 -0.3411 2.6326 -0.4318 8 7 0.0784 3.2666 -2.5187 9 6 -1.2152 3.7639 -2.6740 10 6 -1.6078 4.2837 -3.8978 11 6 -2.9190 4.7798 -4.0320 12 6 -3.3712 5.3218 -5.2588 13 1 -4.4133 5.2442 -5.5319 14 6 -2.4677 5.9587 -6.1184 15 7 -2.8218 6.2440 -7.3441 16 14 -0.7564 6.4006 -5.5137 17 1 0.1822 5.2952 -5.8333 18 1 -0.3011 7.6456 -6.1829 19 1 -0.7900 6.6122 -4.0442 20 6 -3.7686 4.7202 -2.9063 21 6 -3.2923 4.1899 -1.7411 22 7 -2.0577 3.7293 -1.6520 23 6 3.5419 1.4443 0.1239 24 8 4.2218 1.9392 -0.7501 25 7 4.1298 0.8911 1.2031 26 6 5.5901 0.8875 1.3207 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.2720 2.1232 -1.9977 33 1 0.7215 3.3541 -3.2396 34 1 -0.9219 4.3078 -4.7316 35 1 -2.1958 6.6848 -7.9396 36 1 -4.7819 5.0892 -2.9654 37 1 -3.9391 4.1420 -0.8775 38 1 3.5860 0.4954 1.9021 39 1 5.8784 0.4014 2.2526 40 1 6.0209 0.3451 0.4791 41 1 5.9573 1.9138 1.3178 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365071610.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:11:40 Heat of formation + Delta-G solvation = -22.150796 kcal Electronic energy + Delta-G solvation = -25009.971992 eV Core-core repulsion = 21311.351627 eV Total energy + Delta-G solvation = -3698.620365 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.67438 -39.63295 -38.28513 -35.57226 -35.04314 -34.22580 -33.79313 -32.10788 -31.25888 -29.09184 -28.30649 -26.05079 -25.72608 -22.48372 -22.35327 -21.75957 -20.48243 -20.14337 -18.80850 -17.77166 -17.38074 -16.55037 -16.04331 -15.92178 -15.49040 -15.17687 -14.96592 -14.63547 -14.28222 -13.99917 -13.73992 -13.67778 -13.25205 -13.08252 -12.90519 -12.73183 -12.63577 -12.36202 -12.10103 -11.58814 -11.52912 -10.96268 -10.95541 -10.81310 -10.65677 -10.16528 -10.01658 -9.90023 -9.65545 -9.53945 -9.36046 -8.93400 -8.19808 -7.86934 -7.23724 -7.02851 -4.72416 2.26121 2.40530 2.52885 2.64988 3.03264 3.09217 3.15232 3.26823 3.68179 3.90416 4.28531 4.38149 4.61355 4.76216 4.84570 4.91005 5.11798 5.20212 5.40120 5.42009 5.46035 5.68233 5.72058 5.92676 5.96556 6.12804 6.26088 6.36067 6.42128 6.46509 6.56534 6.58338 6.94548 7.04858 7.06119 7.20587 7.30916 7.66365 7.80471 7.95523 8.19591 8.23424 8.45491 8.67166 8.97551 9.48593 9.98650 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.021272 B = 0.003554 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.942344 B = 7875.466487 C = 8826.300274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.150 3.850 4 H 0.116 0.884 5 N -0.737 5.737 6 C 0.697 3.303 7 O -0.523 6.523 8 N -0.671 5.671 9 C 0.387 3.613 10 C -0.322 4.322 11 C 0.130 3.870 12 C -0.437 4.437 13 H 0.095 0.905 14 C 0.085 3.915 15 N -0.805 5.805 16 Si 0.918 3.082 17 H -0.271 1.271 18 H -0.292 1.292 19 H -0.245 1.245 20 C -0.271 4.271 21 C 0.129 3.871 22 N -0.551 5.551 23 C 0.511 3.489 24 O -0.533 6.533 25 N -0.732 5.732 26 C 0.087 3.913 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.401 0.599 33 H 0.405 0.595 34 H 0.108 0.892 35 H 0.287 0.713 36 H 0.109 0.891 37 H 0.129 0.871 38 H 0.405 0.595 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.686 -10.752 13.366 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C 0.040 3.960 4 H 0.134 0.866 5 N -0.396 5.396 6 C 0.397 3.603 7 O -0.394 6.394 8 N -0.319 5.319 9 C 0.159 3.841 10 C -0.348 4.348 11 C 0.121 3.879 12 C -0.468 4.468 13 H 0.113 0.887 14 C -0.135 4.135 15 N -0.429 5.429 16 Si 0.745 3.255 17 H -0.197 1.197 18 H -0.219 1.219 19 H -0.168 1.168 20 C -0.295 4.295 21 C -0.022 4.022 22 N -0.271 5.271 23 C 0.297 3.703 24 O -0.409 6.409 25 N -0.385 5.385 26 C -0.057 4.057 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.237 0.763 33 H 0.239 0.761 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.146 0.854 38 H 0.239 0.761 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.771 -10.699 14.184 22.479 hybrid contribution 0.960 0.470 -1.231 1.631 sum 14.731 -10.229 12.953 22.123 Atomic orbital electron populations 1.21792 0.93215 1.00729 1.04342 1.21941 0.98562 0.93820 1.02275 1.20599 0.90036 0.95527 0.89798 0.86631 1.44879 1.16734 1.61806 1.16224 1.15890 0.81799 0.78862 0.83763 1.91024 1.50159 1.61277 1.36892 1.42615 1.12565 1.59863 1.16807 1.17736 0.83617 0.92496 0.90264 1.21210 1.00400 1.16743 0.96461 1.17695 0.89850 0.87673 0.92682 1.19505 0.97986 1.30557 0.98724 0.88663 1.26180 1.00754 0.93120 0.93483 1.69607 1.37937 1.30290 1.05079 0.86229 0.80645 0.77210 0.81424 1.19723 1.21936 1.16782 1.21680 1.01637 1.11921 0.94243 1.21620 0.91041 0.93364 0.96221 1.67313 1.04191 1.25908 1.29646 1.20814 0.90520 0.77277 0.81713 1.90709 1.65408 1.44847 1.39962 1.45726 1.08346 1.61050 1.23348 1.21559 0.79533 1.02492 1.02086 0.91690 0.91463 0.93505 0.91446 0.91151 0.76304 0.76060 0.87465 0.90219 0.87247 0.85393 0.76115 0.90477 0.92093 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.51 37.16 0.32 -1.49 16 2 C -0.13 -1.23 5.55 -26.73 -0.15 -1.38 16 3 C 0.15 1.71 2.67 -69.08 -0.18 1.52 16 4 H 0.12 1.38 7.58 -51.93 -0.39 0.98 16 5 N -0.74 -10.24 4.91 -59.81 -0.29 -10.53 16 6 C 0.70 12.52 7.09 -86.92 -0.62 11.91 16 7 O -0.52 -10.84 11.74 5.30 0.06 -10.77 16 8 N -0.67 -12.72 5.40 -15.86 -0.09 -12.81 16 9 C 0.39 8.90 7.42 -154.68 -1.15 7.75 16 10 C -0.32 -7.71 6.95 -38.45 -0.27 -7.97 16 11 C 0.13 3.26 5.17 -106.55 -0.55 2.71 16 12 C -0.44 -11.57 9.67 -37.65 -0.36 -11.93 16 13 H 0.10 2.62 8.06 -52.48 -0.42 2.20 16 14 C 0.08 2.17 5.48 -17.35 -0.10 2.07 16 15 N -0.80 -20.93 13.92 55.55 0.77 -20.16 16 16 Si 0.92 20.49 24.43 -169.99 -4.15 16.34 16 17 H -0.27 -5.71 6.67 56.52 0.38 -5.33 16 18 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 19 H -0.24 -5.73 6.65 56.52 0.38 -5.35 16 20 C -0.27 -6.31 9.85 -39.07 -0.38 -6.69 16 21 C 0.13 2.90 11.10 -18.04 -0.20 2.70 16 22 N -0.55 -13.17 7.85 -12.76 -0.10 -13.27 16 23 C 0.51 5.55 7.22 -10.99 -0.08 5.47 16 24 O -0.53 -7.66 15.84 5.56 0.09 -7.57 16 25 N -0.73 -5.21 5.57 -67.08 -0.37 -5.58 16 26 C 0.09 0.52 10.70 59.84 0.64 1.16 16 27 H 0.06 0.87 7.84 -51.93 -0.41 0.46 16 28 H 0.07 1.09 5.64 -51.93 -0.29 0.80 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.47 7.43 -51.93 -0.39 0.08 16 32 H 0.40 5.17 7.81 -40.82 -0.32 4.85 16 33 H 0.40 6.44 8.71 -40.82 -0.36 6.09 16 34 H 0.11 2.48 4.43 -52.49 -0.23 2.24 16 35 H 0.29 6.76 8.29 -40.82 -0.34 6.42 16 36 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 37 H 0.13 2.47 8.06 -52.49 -0.42 2.05 16 38 H 0.40 1.73 8.20 -40.82 -0.33 1.40 16 39 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 338.29 15.07 5.10 5.10 Total: -1.00 -33.05 338.29 -7.35 -40.41 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -5.29 Total: 13.02 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -3.08 Total: 5.84 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: -0.08 Total: -62.36 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.15 Total: -18.35 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.15 Total: 16.34 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.05 -7.35 -40.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365071610.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.256 kcal (2) G-P(sol) polarization free energy of solvation -33.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds