Wall clock time and date at job start Tue Mar 31 2020 09:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47154 * 2 1 4 4 H 1.09005 * 109.47373 * 54.99946 * 3 2 1 5 5 N 1.46502 * 109.47399 * 295.00327 * 3 2 1 6 6 C 1.34773 * 119.99998 * 84.99604 * 5 3 2 7 7 O 1.21574 * 120.00227 * 0.02562 * 6 5 3 8 8 N 1.34783 * 119.99800 * 180.02562 * 6 5 3 9 9 C 1.39457 * 120.00067 * 175.14919 * 8 6 5 10 10 C 1.38641 * 119.64817 * 185.22691 * 9 8 6 11 11 C 1.40826 * 118.67157 * 179.97438 * 10 9 8 12 12 C 1.41547 * 120.99245 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99496 * 149.49154 * 12 11 10 14 14 C 1.40032 * 120.00416 * 329.49275 * 12 11 10 15 15 N 1.30736 * 120.00010 * 167.68815 * 14 12 11 16 16 Si 1.86800 * 119.99613 * 347.68210 * 14 12 11 17 17 H 1.48498 * 109.46798 * 92.44589 * 16 14 12 18 18 H 1.48502 * 109.47026 * 212.44012 * 16 14 12 19 19 H 1.48497 * 109.47482 * 332.44286 * 16 14 12 20 20 C 1.41158 * 118.00690 * 359.97438 * 11 10 9 21 21 C 1.36590 * 119.12886 * 0.02562 * 20 11 10 22 22 N 1.32069 * 121.25807 * 359.73653 * 21 20 11 23 23 C 1.50693 * 109.47290 * 174.99893 * 3 2 1 24 24 O 1.21282 * 120.00128 * 119.72625 * 23 3 2 25 25 N 1.34782 * 120.00345 * 300.00437 * 23 3 2 26 26 C 1.46496 * 120.00356 * 179.72511 * 25 23 3 27 27 H 1.09004 * 109.46818 * 299.99721 * 1 2 3 28 28 H 1.08998 * 109.46810 * 59.99629 * 1 2 3 29 29 H 1.09000 * 109.47071 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47150 * 240.00239 * 2 1 3 31 31 H 1.08994 * 109.47242 * 119.99751 * 2 1 3 32 32 H 0.97000 * 119.99434 * 264.99888 * 5 3 2 33 33 H 0.96996 * 119.99589 * 355.15184 * 8 6 5 34 34 H 1.07996 * 120.66481 * 359.97438 * 10 9 8 35 35 H 0.96994 * 119.99812 * 180.02562 * 15 14 12 36 36 H 1.08000 * 120.43826 * 180.02562 * 20 11 10 37 37 H 1.08000 * 119.37268 * 180.02562 * 21 20 11 38 38 H 0.96999 * 119.99545 * 359.71854 * 25 23 3 39 39 H 1.08992 * 109.47174 * 179.97438 * 26 25 23 40 40 H 1.09001 * 109.46531 * 299.99773 * 26 25 23 41 41 H 1.08999 * 109.47233 * 59.99468 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6525 2.0976 -1.2518 6 6 0.4352 2.6644 -1.3669 7 8 -0.3411 2.6326 -0.4318 8 7 0.0784 3.2666 -2.5187 9 6 -1.2152 3.7639 -2.6740 10 6 -1.6078 4.2837 -3.8978 11 6 -2.9190 4.7798 -4.0320 12 6 -3.3712 5.3218 -5.2588 13 1 -4.4133 5.2442 -5.5319 14 6 -2.4677 5.9587 -6.1184 15 7 -2.8218 6.2440 -7.3441 16 14 -0.7564 6.4006 -5.5137 17 1 0.1822 5.2952 -5.8333 18 1 -0.3011 7.6456 -6.1829 19 1 -0.7900 6.6122 -4.0442 20 6 -3.7686 4.7202 -2.9063 21 6 -3.2923 4.1899 -1.7411 22 7 -2.0577 3.7293 -1.6520 23 6 3.5419 1.4443 0.1239 24 8 4.2218 1.9392 -0.7501 25 7 4.1298 0.8911 1.2031 26 6 5.5901 0.8875 1.3207 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.2720 2.1232 -1.9977 33 1 0.7215 3.3541 -3.2396 34 1 -0.9219 4.3078 -4.7316 35 1 -2.1958 6.6848 -7.9396 36 1 -4.7819 5.0892 -2.9654 37 1 -3.9391 4.1420 -0.8775 38 1 3.5860 0.4954 1.9021 39 1 5.8784 0.4014 2.2526 40 1 6.0209 0.3451 0.4791 41 1 5.9573 1.9138 1.3178 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365071610.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:11:40 Heat of formation + Delta-G solvation = -47.784110 kcal Electronic energy + Delta-G solvation = -25011.083536 eV Core-core repulsion = 21311.351627 eV Total energy + Delta-G solvation = -3699.731908 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.87253 -40.91116 -39.84898 -36.78463 -35.90717 -35.78367 -35.51170 -33.32980 -33.07641 -30.60746 -29.30078 -27.90705 -26.58606 -24.17860 -23.77532 -22.87423 -21.74366 -21.33737 -20.14337 -19.47117 -18.64176 -17.62357 -17.54921 -17.07600 -16.96534 -16.44078 -16.23432 -15.97475 -15.93890 -15.18585 -15.03308 -14.92510 -14.76193 -14.71649 -14.16330 -14.02538 -13.48061 -13.35665 -13.11332 -12.99368 -12.77264 -12.65584 -12.60217 -12.50168 -11.91711 -11.82011 -11.51230 -11.31409 -11.13527 -11.05845 -10.22420 -10.13280 -10.06968 -9.68208 -8.98385 -8.94374 -6.72579 0.61721 0.77374 1.23232 1.37019 1.38211 1.43316 1.46855 2.08144 2.12915 2.28058 2.70683 3.06471 3.54426 3.57329 3.88827 4.00891 4.04725 4.34620 4.44858 4.48235 4.57898 4.61415 4.63943 4.66685 4.77059 4.85459 4.96871 5.00260 5.13089 5.13598 5.29873 5.34031 5.39137 5.49669 5.56735 5.66305 5.81670 6.11475 6.28631 6.41136 6.52802 6.69521 6.84259 7.09340 7.50528 7.74910 8.11011 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.021272 B = 0.003554 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.942344 B = 7875.466487 C = 8826.300274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 C 0.147 3.853 4 H 0.112 0.888 5 N -0.724 5.724 6 C 0.697 3.303 7 O -0.551 6.551 8 N -0.668 5.668 9 C 0.387 3.613 10 C -0.329 4.329 11 C 0.115 3.885 12 C -0.468 4.468 13 H 0.068 0.932 14 C 0.052 3.948 15 N -0.838 5.838 16 Si 0.967 3.033 17 H -0.248 1.248 18 H -0.278 1.278 19 H -0.262 1.262 20 C -0.281 4.281 21 C 0.131 3.869 22 N -0.564 5.564 23 C 0.514 3.486 24 O -0.573 6.573 25 N -0.714 5.714 26 C 0.083 3.917 27 H 0.052 0.948 28 H 0.027 0.973 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.408 0.592 33 H 0.418 0.582 34 H 0.115 0.885 35 H 0.298 0.702 36 H 0.121 0.879 37 H 0.161 0.839 38 H 0.421 0.579 39 H 0.114 0.886 40 H 0.054 0.946 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.066 -12.169 15.402 25.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.156 4.156 3 C 0.038 3.962 4 H 0.130 0.870 5 N -0.382 5.382 6 C 0.397 3.603 7 O -0.424 6.424 8 N -0.317 5.317 9 C 0.157 3.843 10 C -0.355 4.355 11 C 0.107 3.893 12 C -0.498 4.498 13 H 0.086 0.914 14 C -0.164 4.164 15 N -0.464 5.464 16 Si 0.791 3.209 17 H -0.173 1.173 18 H -0.205 1.205 19 H -0.186 1.186 20 C -0.305 4.305 21 C -0.020 4.020 22 N -0.284 5.284 23 C 0.299 3.701 24 O -0.452 6.452 25 N -0.366 5.366 26 C -0.060 4.060 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.245 0.755 33 H 0.255 0.745 34 H 0.132 0.868 35 H 0.108 0.892 36 H 0.139 0.861 37 H 0.178 0.822 38 H 0.258 0.742 39 H 0.133 0.867 40 H 0.073 0.927 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 16.201 -12.167 16.241 25.967 hybrid contribution 0.208 0.808 -1.703 1.897 sum 16.409 -11.359 14.538 24.691 Atomic orbital electron populations 1.21691 0.95267 1.00853 1.01752 1.21905 0.96405 0.92886 1.04396 1.20805 0.90775 0.96285 0.88296 0.87017 1.44776 1.15257 1.60733 1.17475 1.15942 0.82630 0.78724 0.82987 1.91000 1.51351 1.62337 1.37726 1.42557 1.11545 1.59688 1.17879 1.17907 0.84864 0.91814 0.89749 1.21282 1.00122 1.16904 0.97209 1.17889 0.91010 0.87698 0.92748 1.19488 0.97146 1.32930 1.00274 0.91411 1.26798 1.03623 0.92621 0.93396 1.69622 1.39470 1.31355 1.05911 0.85478 0.77490 0.78181 0.79746 1.17314 1.20521 1.18624 1.21880 1.02166 1.12263 0.94184 1.22122 0.91015 0.92006 0.96906 1.67460 1.04812 1.26031 1.30084 1.20655 0.89900 0.77312 0.82212 1.90700 1.65932 1.46945 1.41647 1.45637 1.09226 1.59352 1.22373 1.21730 0.78321 1.02156 1.03818 0.92863 0.95369 0.92013 0.91125 0.87138 0.75542 0.74474 0.86778 0.89172 0.86065 0.82178 0.74161 0.86710 0.92716 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.51 71.98 0.61 -2.65 16 2 C -0.12 -1.94 5.55 30.60 0.17 -1.77 16 3 C 0.15 3.04 2.67 44.24 0.12 3.16 16 4 H 0.11 2.46 7.58 -2.38 -0.02 2.44 16 5 N -0.72 -19.13 4.91 -461.42 -2.27 -21.40 16 6 C 0.70 24.41 7.09 179.05 1.27 25.68 16 7 O -0.55 -22.48 11.74 -3.95 -0.05 -22.53 16 8 N -0.67 -24.67 5.40 -322.37 -1.74 -26.41 16 9 C 0.39 17.51 7.42 132.76 0.99 18.49 16 10 C -0.33 -15.65 6.95 23.00 0.16 -15.49 16 11 C 0.12 5.87 5.17 -21.11 -0.11 5.76 16 12 C -0.47 -25.55 9.67 23.52 0.23 -25.32 16 13 H 0.07 3.94 8.06 -2.91 -0.02 3.92 16 14 C 0.05 2.73 5.48 85.29 0.47 3.19 16 15 N -0.84 -44.33 13.92 21.84 0.30 -44.03 16 16 Si 0.97 41.80 24.43 68.60 1.68 43.47 16 17 H -0.25 -9.73 6.67 99.48 0.66 -9.07 16 18 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 19 H -0.26 -12.01 6.65 99.48 0.66 -11.34 16 20 C -0.28 -13.11 9.85 22.60 0.22 -12.89 16 21 C 0.13 5.76 11.10 84.27 0.94 6.70 16 22 N -0.56 -26.52 7.85 -194.27 -1.53 -28.04 16 23 C 0.51 9.98 7.22 87.65 0.63 10.61 16 24 O -0.57 -15.59 15.84 -3.03 -0.05 -15.64 16 25 N -0.71 -7.84 5.57 -484.54 -2.70 -10.54 16 26 C 0.08 0.74 10.70 127.77 1.37 2.11 16 27 H 0.05 1.36 7.84 -2.38 -0.02 1.34 16 28 H 0.03 0.88 5.64 -2.39 -0.01 0.87 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.11 0.97 7.43 -2.39 -0.02 0.95 16 32 H 0.41 9.94 7.81 -92.71 -0.72 9.22 16 33 H 0.42 12.74 8.71 -92.71 -0.81 11.93 16 34 H 0.11 5.17 4.43 -2.91 -0.01 5.16 16 35 H 0.30 14.08 8.29 -92.71 -0.77 13.31 16 36 H 0.12 5.23 8.06 -2.91 -0.02 5.20 16 37 H 0.16 5.86 8.06 -2.91 -0.02 5.84 16 38 H 0.42 1.87 8.20 -92.71 -0.76 1.11 16 39 H 0.11 0.17 8.14 -2.39 -0.02 0.16 16 40 H 0.05 0.59 8.14 -2.39 -0.02 0.58 16 41 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -73.05 338.29 -0.56 -73.61 By element: Atomic # 1 Polarization: 35.18 SS G_CDS: -1.28 Total: 33.91 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 7.06 Total: 17.58 kcal Atomic # 7 Polarization: -122.48 SS G_CDS: -7.93 Total: -130.41 kcal Atomic # 8 Polarization: -38.07 SS G_CDS: -0.09 Total: -38.17 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.68 Total: 43.47 kcal Total: -73.05 -0.56 -73.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365071610.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.827 kcal (2) G-P(sol) polarization free energy of solvation -73.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds