Wall clock time and date at job start Tue Mar 31 2020 08:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34392 * 119.55343 * 2 1 4 4 O 1.21563 * 119.17251 * 359.95741 * 3 2 1 5 5 N 1.34437 * 121.65281 * 180.23409 * 3 2 1 6 6 H 0.96996 * 119.67450 * 179.74465 * 5 3 2 7 7 C 1.36861 * 120.64588 * 359.49013 * 5 3 2 8 8 N 1.36379 * 120.47433 * 180.22882 * 7 5 3 9 9 C 1.46502 * 120.00153 * 0.27374 * 8 7 5 10 10 C 1.52994 * 109.47353 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47233 * 300.00090 * 10 9 8 12 12 C 1.53000 * 109.46921 * 59.99923 * 10 9 8 13 13 C 1.52996 * 109.47336 * 179.97438 * 10 9 8 14 14 C 1.50697 * 109.47434 * 180.02562 * 13 10 9 15 15 H 1.08008 * 120.00063 * 359.97438 * 14 13 10 16 16 C 1.37877 * 120.00239 * 179.97438 * 14 13 10 17 17 N 1.31518 * 120.00011 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00155 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47336 * 89.99832 * 18 16 14 20 20 H 1.48492 * 109.47438 * 209.99843 * 18 16 14 21 21 H 1.48503 * 109.46970 * 329.99846 * 18 16 14 22 22 C 1.39872 * 119.04860 * 0.49641 * 7 5 3 23 23 C 1.43199 * 120.75926 * 179.77677 * 22 7 5 24 24 N 4.79109 * 135.37156 * 179.97438 * 2 1 3 25 25 C 1.34770 * 119.55224 * 179.97438 * 2 1 3 26 26 O 1.21769 * 120.36479 * 0.04271 * 25 2 1 27 27 H 1.08991 * 109.47219 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47318 * 120.00041 * 1 2 3 29 29 H 1.09005 * 109.46820 * 239.99398 * 1 2 3 30 30 H 0.96998 * 120.00205 * 180.26648 * 8 7 5 31 31 H 1.08999 * 109.46941 * 300.00179 * 9 8 7 32 32 H 1.09002 * 109.47137 * 59.99225 * 9 8 7 33 33 H 1.09005 * 109.47240 * 60.00071 * 11 10 9 34 34 H 1.09003 * 109.47195 * 179.97438 * 11 10 9 35 35 H 1.08996 * 109.47141 * 299.99392 * 11 10 9 36 36 H 1.09002 * 109.47422 * 60.00331 * 12 10 9 37 37 H 1.09003 * 109.47275 * 180.02562 * 12 10 9 38 38 H 1.08997 * 109.47501 * 299.99559 * 12 10 9 39 39 H 1.09002 * 109.47221 * 299.99800 * 13 10 9 40 40 H 1.09002 * 109.47466 * 60.00051 * 13 10 9 41 41 H 0.96996 * 120.00235 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1279 1.1691 0.0000 4 8 1.4968 2.2081 -0.0008 5 7 3.4713 1.2183 -0.0047 6 1 3.9203 2.0781 -0.0083 7 6 4.2117 0.0672 0.0009 8 7 5.5744 0.1213 0.0008 9 6 6.2560 1.4181 0.0008 10 6 7.7701 1.1984 0.0014 11 6 8.1709 0.4116 1.2508 12 6 8.1717 0.4112 -1.2476 13 6 8.4820 2.5527 0.0007 14 6 9.9734 2.3363 0.0006 15 1 10.3735 1.3331 0.0014 16 6 10.8271 3.4190 -0.0004 17 7 12.1286 3.2301 0.0000 18 14 10.1352 5.1541 -0.0010 19 1 9.9525 5.6147 1.3989 20 1 11.0776 6.0626 -0.7020 21 1 8.8252 5.1643 -0.7004 22 6 3.5506 -1.1654 0.0009 23 6 4.2889 -2.3924 0.0018 24 7 4.8747 -3.3658 0.0015 25 6 2.1297 -1.1724 0.0005 26 8 1.5194 -2.2260 0.0002 27 1 -0.3633 1.0276 0.0005 28 1 -0.3634 -0.5139 -0.8900 29 1 -0.3633 -0.5140 0.8900 30 1 6.0923 -0.6988 0.0008 31 1 5.9702 1.9788 -0.8891 32 1 5.9702 1.9788 0.8908 33 1 7.6638 -0.5533 1.2508 34 1 9.2496 0.2547 1.2509 35 1 7.8849 0.9724 2.1406 36 1 7.8862 0.9717 -2.1378 37 1 9.2503 0.2542 -1.2471 38 1 7.6646 -0.5537 -1.2477 39 1 8.1965 3.1128 -0.8897 40 1 8.1960 3.1139 0.8903 41 1 12.7293 3.9917 -0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365228564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:26 Heat of formation + Delta-G solvation = -17.214700 kcal Electronic energy + Delta-G solvation = -25148.536600 eV Core-core repulsion = 21450.130281 eV Total energy + Delta-G solvation = -3698.406319 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.70241 -39.59466 -39.19697 -37.34269 -36.28549 -35.31275 -34.27091 -32.47604 -31.36778 -28.40027 -27.70606 -26.88344 -26.55763 -24.53275 -23.79687 -22.49882 -20.80262 -19.66086 -18.77303 -18.12189 -17.42829 -17.35627 -16.97895 -16.54706 -15.68566 -15.52392 -15.38780 -14.67286 -14.53407 -14.10448 -14.08151 -13.86794 -13.24423 -13.12115 -13.00273 -12.97883 -12.63840 -12.55263 -12.50553 -12.40724 -11.56690 -11.48374 -11.43374 -11.23641 -10.94805 -10.86850 -10.46828 -10.40647 -10.19394 -10.03632 -9.98164 -9.89136 -9.26982 -8.72441 -8.35804 -6.21735 -4.21559 0.64543 1.41729 1.58379 2.27768 2.54437 2.76355 3.06872 3.15315 3.22889 3.25442 3.60861 3.77541 4.26986 4.47622 4.56096 4.70995 4.82470 5.08353 5.09181 5.10104 5.11427 5.15192 5.35838 5.46088 5.51626 5.59309 5.59975 5.77888 5.95193 6.10238 6.27576 6.28161 6.52500 6.63000 6.74400 6.76681 6.84430 6.87218 7.02651 7.16042 7.55426 7.61865 7.71754 8.31966 8.81253 9.38827 10.90761 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.020626 B = 0.003517 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.202100 B = 7959.005956 C = 9114.551741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.558 5.558 3 C 0.716 3.284 4 O -0.530 6.530 5 N -0.638 5.638 6 H 0.441 0.559 7 C 0.544 3.456 8 N -0.675 5.675 9 C 0.089 3.911 10 C -0.059 4.059 11 C -0.135 4.135 12 C -0.135 4.135 13 C 0.000 4.000 14 C -0.519 4.519 15 H 0.079 0.921 16 C 0.069 3.931 17 N -0.898 5.898 18 Si 0.876 3.124 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.267 1.267 22 C -0.331 4.331 23 C 0.295 3.705 24 N -0.436 5.436 25 C 0.589 3.411 26 O -0.516 6.516 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.430 0.570 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.032 0.968 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.032 0.968 39 H 0.020 0.980 40 H 0.016 0.984 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.760 -1.638 -0.023 18.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.304 5.304 3 C 0.417 3.583 4 O -0.402 6.402 5 N -0.288 5.288 6 H 0.284 0.716 7 C 0.313 3.687 8 N -0.301 5.301 9 C -0.033 4.033 10 C -0.060 4.060 11 C -0.192 4.192 12 C -0.192 4.192 13 C -0.038 4.038 14 C -0.557 4.557 15 H 0.097 0.903 16 C -0.133 4.133 17 N -0.536 5.536 18 Si 0.704 3.296 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.191 1.191 22 C -0.352 4.352 23 C -0.019 4.019 24 N -0.114 5.114 25 C 0.385 3.615 26 O -0.391 6.391 27 H 0.119 0.881 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.273 0.727 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.051 0.949 39 H 0.039 0.961 40 H 0.034 0.966 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.424 -2.872 -0.029 18.646 hybrid contribution 0.113 1.553 0.025 1.557 sum -18.311 -1.320 -0.003 18.358 Atomic orbital electron populations 1.21952 0.74738 1.05147 1.04129 1.46047 1.10462 1.05690 1.68176 1.15424 0.80457 0.84744 0.77647 1.91081 1.64082 1.31202 1.53817 1.42681 1.06035 1.09322 1.70748 0.71572 1.17869 0.83176 0.85727 0.81907 1.45162 1.01328 1.12963 1.70661 1.22389 0.95907 0.82365 1.02640 1.20697 0.88786 0.99930 0.96562 1.21842 1.03684 0.97259 0.96409 1.21839 1.03682 0.97245 0.96409 1.19602 0.97086 0.90398 0.96681 1.21000 0.88139 0.95091 1.51429 0.90294 1.25007 0.94726 0.99039 0.94522 1.69888 1.02140 1.31231 1.50386 0.86850 0.79257 0.85015 0.78501 1.20305 1.21361 1.19126 1.15091 0.90770 0.85238 1.44062 1.24076 0.93316 0.92069 0.92416 1.81282 1.08231 1.08747 1.13162 1.16099 0.86399 0.82817 0.76144 1.90893 1.69560 1.29220 1.49473 0.88103 0.90095 0.90108 0.72705 0.90002 0.90008 0.94925 0.90129 0.92924 0.92918 0.90126 0.94927 0.96149 0.96596 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 9.99 59.85 0.60 1.21 16 2 N -0.56 -5.49 2.95 -131.44 -0.39 -5.87 16 3 C 0.72 6.74 8.35 -87.57 -0.73 6.01 16 4 O -0.53 -5.99 16.34 5.31 0.09 -5.90 16 5 N -0.64 -4.80 5.20 -15.50 -0.08 -4.88 16 6 H 0.44 2.47 7.28 -40.82 -0.30 2.18 16 7 C 0.54 4.77 7.53 -153.26 -1.15 3.61 16 8 N -0.68 -6.01 4.95 -59.80 -0.30 -6.31 16 9 C 0.09 0.85 3.94 -4.04 -0.02 0.83 16 10 C -0.06 -0.83 0.54 -154.52 -0.08 -0.91 16 11 C -0.13 -1.91 8.05 37.16 0.30 -1.61 16 12 C -0.13 -1.91 8.05 37.16 0.30 -1.61 16 13 C 0.00 0.00 3.11 -27.89 -0.09 -0.09 16 14 C -0.52 -12.42 8.20 -34.44 -0.28 -12.70 16 15 H 0.08 2.04 5.92 -52.48 -0.31 1.73 16 16 C 0.07 1.79 5.47 -17.82 -0.10 1.70 16 17 N -0.90 -25.42 13.96 55.43 0.77 -24.64 16 18 Si 0.88 19.37 27.47 -169.99 -4.67 14.70 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.27 -5.50 6.54 56.52 0.37 -5.13 16 22 C -0.33 -3.74 5.82 -105.88 -0.62 -4.36 16 23 C 0.30 4.04 13.76 -22.47 -0.31 3.74 16 24 N -0.44 -6.84 18.54 41.84 0.78 -6.06 16 25 C 0.59 7.11 7.44 -14.79 -0.11 7.00 16 26 O -0.52 -7.83 16.58 5.13 0.09 -7.74 16 27 H 0.10 0.69 6.81 -51.93 -0.35 0.33 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.43 4.23 5.01 -40.82 -0.20 4.03 16 31 H 0.08 0.67 7.99 -51.93 -0.42 0.25 16 32 H 0.08 0.66 8.01 -51.93 -0.42 0.25 16 33 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 34 H 0.08 1.38 6.62 -51.93 -0.34 1.03 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.38 6.62 -51.93 -0.34 1.03 16 38 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 39 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 40 H 0.02 0.29 7.57 -51.93 -0.39 -0.10 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 340.62 15.07 5.13 5.13 Total: -1.00 -31.35 340.62 -5.89 -37.24 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.02 Total: 1.51 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -2.29 Total: 2.83 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.78 Total: -47.77 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.17 Total: -13.64 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.67 Total: 14.70 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.35 -5.89 -37.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365228564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.024 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds