Wall clock time and date at job start Tue Mar 31 2020 08:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34392 * 119.55343 * 2 1 4 4 O 1.21563 * 119.17251 * 359.95741 * 3 2 1 5 5 N 1.34437 * 121.65281 * 180.23409 * 3 2 1 6 6 H 0.96996 * 119.67450 * 179.74465 * 5 3 2 7 7 C 1.36861 * 120.64588 * 359.49013 * 5 3 2 8 8 N 1.36379 * 120.47433 * 180.22882 * 7 5 3 9 9 C 1.46502 * 120.00153 * 0.27374 * 8 7 5 10 10 C 1.52994 * 109.47353 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47233 * 300.00090 * 10 9 8 12 12 C 1.53000 * 109.46921 * 59.99923 * 10 9 8 13 13 C 1.52996 * 109.47336 * 179.97438 * 10 9 8 14 14 C 1.50697 * 109.47434 * 180.02562 * 13 10 9 15 15 H 1.08008 * 120.00063 * 359.97438 * 14 13 10 16 16 C 1.37877 * 120.00239 * 179.97438 * 14 13 10 17 17 N 1.31518 * 120.00011 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00155 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47336 * 89.99832 * 18 16 14 20 20 H 1.48492 * 109.47438 * 209.99843 * 18 16 14 21 21 H 1.48503 * 109.46970 * 329.99846 * 18 16 14 22 22 C 1.39872 * 119.04860 * 0.49641 * 7 5 3 23 23 C 1.43199 * 120.75926 * 179.77677 * 22 7 5 24 24 N 4.79109 * 135.37156 * 179.97438 * 2 1 3 25 25 C 1.34770 * 119.55224 * 179.97438 * 2 1 3 26 26 O 1.21769 * 120.36479 * 0.04271 * 25 2 1 27 27 H 1.08991 * 109.47219 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47318 * 120.00041 * 1 2 3 29 29 H 1.09005 * 109.46820 * 239.99398 * 1 2 3 30 30 H 0.96998 * 120.00205 * 180.26648 * 8 7 5 31 31 H 1.08999 * 109.46941 * 300.00179 * 9 8 7 32 32 H 1.09002 * 109.47137 * 59.99225 * 9 8 7 33 33 H 1.09005 * 109.47240 * 60.00071 * 11 10 9 34 34 H 1.09003 * 109.47195 * 179.97438 * 11 10 9 35 35 H 1.08996 * 109.47141 * 299.99392 * 11 10 9 36 36 H 1.09002 * 109.47422 * 60.00331 * 12 10 9 37 37 H 1.09003 * 109.47275 * 180.02562 * 12 10 9 38 38 H 1.08997 * 109.47501 * 299.99559 * 12 10 9 39 39 H 1.09002 * 109.47221 * 299.99800 * 13 10 9 40 40 H 1.09002 * 109.47466 * 60.00051 * 13 10 9 41 41 H 0.96996 * 120.00235 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1279 1.1691 0.0000 4 8 1.4968 2.2081 -0.0008 5 7 3.4713 1.2183 -0.0047 6 1 3.9203 2.0781 -0.0083 7 6 4.2117 0.0672 0.0009 8 7 5.5744 0.1213 0.0008 9 6 6.2560 1.4181 0.0008 10 6 7.7701 1.1984 0.0014 11 6 8.1709 0.4116 1.2508 12 6 8.1717 0.4112 -1.2476 13 6 8.4820 2.5527 0.0007 14 6 9.9734 2.3363 0.0006 15 1 10.3735 1.3331 0.0014 16 6 10.8271 3.4190 -0.0004 17 7 12.1286 3.2301 0.0000 18 14 10.1352 5.1541 -0.0010 19 1 9.9525 5.6147 1.3989 20 1 11.0776 6.0626 -0.7020 21 1 8.8252 5.1643 -0.7004 22 6 3.5506 -1.1654 0.0009 23 6 4.2889 -2.3924 0.0018 24 7 4.8747 -3.3658 0.0015 25 6 2.1297 -1.1724 0.0005 26 8 1.5194 -2.2260 0.0002 27 1 -0.3633 1.0276 0.0005 28 1 -0.3634 -0.5139 -0.8900 29 1 -0.3633 -0.5140 0.8900 30 1 6.0923 -0.6988 0.0008 31 1 5.9702 1.9788 -0.8891 32 1 5.9702 1.9788 0.8908 33 1 7.6638 -0.5533 1.2508 34 1 9.2496 0.2547 1.2509 35 1 7.8849 0.9724 2.1406 36 1 7.8862 0.9717 -2.1378 37 1 9.2503 0.2542 -1.2471 38 1 7.6646 -0.5537 -1.2477 39 1 8.1965 3.1128 -0.8897 40 1 8.1960 3.1139 0.8903 41 1 12.7293 3.9917 -0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365228564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:25 Heat of formation + Delta-G solvation = -38.277225 kcal Electronic energy + Delta-G solvation = -25149.449940 eV Core-core repulsion = 21450.130281 eV Total energy + Delta-G solvation = -3699.319659 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.49366 -40.48454 -40.08317 -38.40749 -37.32486 -36.19771 -35.30036 -34.15937 -32.30131 -29.83270 -28.61440 -28.05841 -27.44487 -25.35474 -24.92892 -23.78091 -21.62166 -20.62241 -19.64998 -19.15608 -18.87462 -18.20411 -18.09085 -17.37416 -16.64589 -16.32981 -16.20590 -16.12105 -15.54546 -15.28473 -15.16929 -15.07780 -14.32113 -14.28206 -14.18256 -13.98117 -13.88342 -13.64432 -13.42178 -13.25425 -12.89026 -12.82439 -12.65803 -12.31484 -12.27998 -12.21568 -11.75792 -11.56265 -11.45537 -11.22308 -11.02225 -10.95076 -10.82051 -10.67336 -9.23798 -8.18455 -6.20533 -0.14102 0.67957 0.75104 1.40235 1.42806 1.44925 1.54010 1.70505 1.85187 2.17778 2.43457 2.66476 2.89430 3.18247 3.56901 3.71658 3.83079 3.94474 4.10764 4.33857 4.44424 4.52111 4.54850 4.55684 4.57770 4.69489 4.85268 4.90924 4.96649 5.03908 5.06263 5.29062 5.32818 5.42167 5.44388 5.55538 5.64360 5.77483 5.83722 6.06011 6.39076 6.40383 6.64406 6.84280 6.89284 7.42805 8.97737 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.020626 B = 0.003517 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.202100 B = 7959.005956 C = 9114.551741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.557 5.557 3 C 0.722 3.278 4 O -0.542 6.542 5 N -0.619 5.619 6 H 0.454 0.546 7 C 0.575 3.425 8 N -0.667 5.667 9 C 0.093 3.907 10 C -0.056 4.056 11 C -0.133 4.133 12 C -0.133 4.133 13 C -0.002 4.002 14 C -0.507 4.507 15 H 0.041 0.959 16 C -0.002 4.002 17 N -0.959 5.959 18 Si 0.941 3.059 19 H -0.272 1.272 20 H -0.301 1.301 21 H -0.231 1.231 22 C -0.346 4.346 23 C 0.309 3.691 24 N -0.481 5.481 25 C 0.591 3.409 26 O -0.555 6.555 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.428 0.572 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.054 0.946 34 H 0.038 0.962 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.038 0.962 38 H 0.054 0.946 39 H 0.032 0.968 40 H 0.030 0.970 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.778 0.365 -0.052 21.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.301 5.301 3 C 0.423 3.577 4 O -0.415 6.415 5 N -0.270 5.270 6 H 0.301 0.699 7 C 0.342 3.658 8 N -0.291 5.291 9 C -0.028 4.028 10 C -0.056 4.056 11 C -0.190 4.190 12 C -0.190 4.190 13 C -0.040 4.040 14 C -0.545 4.545 15 H 0.059 0.941 16 C -0.198 4.198 17 N -0.601 5.601 18 Si 0.766 3.234 19 H -0.198 1.198 20 H -0.228 1.228 21 H -0.154 1.154 22 C -0.366 4.366 23 C -0.003 4.003 24 N -0.161 5.161 25 C 0.389 3.611 26 O -0.434 6.434 27 H 0.129 0.871 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.270 0.730 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.470 -0.840 -0.059 21.486 hybrid contribution 1.096 0.879 0.038 1.405 sum -20.374 0.039 -0.021 20.374 Atomic orbital electron populations 1.22127 0.73563 1.05921 1.04753 1.46042 1.11310 1.05207 1.67545 1.15370 0.80785 0.84217 0.77280 1.91093 1.64455 1.31519 1.54423 1.42537 1.05375 1.09431 1.69670 0.69907 1.17428 0.82737 0.85261 0.80349 1.45091 1.01269 1.12881 1.69845 1.22342 0.92190 0.82662 1.05615 1.20508 0.91890 0.97245 0.95976 1.21789 1.01241 0.98822 0.97169 1.21787 1.01245 0.98806 0.97165 1.19580 0.93523 0.93321 0.97569 1.21435 0.91485 0.93230 1.48347 0.94082 1.25982 0.94853 1.03913 0.95027 1.70082 1.04038 1.32196 1.53796 0.85801 0.79649 0.79149 0.78822 1.19782 1.22761 1.15420 1.14969 0.90492 0.85231 1.45939 1.24417 0.92514 0.92134 0.91279 1.81292 1.09733 1.09924 1.15118 1.16147 0.86561 0.82834 0.75537 1.90878 1.70292 1.30635 1.51556 0.87121 0.89575 0.89588 0.72974 0.87151 0.87120 0.92733 0.94267 0.92015 0.92023 0.94257 0.92737 0.94991 0.95189 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 9.99 127.77 1.28 2.27 16 2 N -0.56 -9.49 2.95 -806.44 -2.38 -11.87 16 3 C 0.72 10.89 8.35 179.28 1.50 12.39 16 4 O -0.54 -10.19 16.34 -3.91 -0.06 -10.25 16 5 N -0.62 -6.36 5.20 -321.40 -1.67 -8.03 16 6 H 0.45 2.38 7.28 -92.71 -0.68 1.71 16 7 C 0.58 7.74 7.53 132.73 1.00 8.74 16 8 N -0.67 -8.97 4.95 -343.10 -1.70 -10.67 16 9 C 0.09 1.28 3.94 86.38 0.34 1.62 16 10 C -0.06 -1.40 0.54 -52.19 -0.03 -1.42 16 11 C -0.13 -3.57 8.05 71.98 0.58 -2.99 16 12 C -0.13 -3.56 8.05 71.98 0.58 -2.98 16 13 C 0.00 -0.07 3.11 29.85 0.09 0.02 16 14 C -0.51 -24.49 8.20 25.60 0.21 -24.28 16 15 H 0.04 2.25 5.92 -2.91 -0.02 2.23 16 16 C 0.00 -0.11 5.47 84.65 0.46 0.35 16 17 N -0.96 -56.59 13.96 21.45 0.30 -56.29 16 18 Si 0.94 39.01 27.47 68.60 1.88 40.90 16 19 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.30 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.23 -8.19 6.54 99.48 0.65 -7.54 16 22 C -0.35 -6.97 5.82 -20.68 -0.12 -7.09 16 23 C 0.31 8.08 13.76 88.33 1.22 9.29 16 24 N -0.48 -14.88 18.54 19.00 0.35 -14.53 16 25 C 0.59 13.18 7.44 85.20 0.63 13.82 16 26 O -0.55 -16.42 16.58 -4.57 -0.08 -16.49 16 27 H 0.11 1.23 6.81 -2.39 -0.02 1.21 16 28 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.43 6.91 5.01 -92.71 -0.46 6.45 16 31 H 0.11 1.04 7.99 -2.39 -0.02 1.02 16 32 H 0.11 1.03 8.01 -2.39 -0.02 1.01 16 33 H 0.05 1.21 6.86 -2.38 -0.02 1.19 16 34 H 0.04 1.37 6.62 -2.39 -0.02 1.35 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.04 1.37 6.62 -2.39 -0.02 1.36 16 38 H 0.05 1.20 6.86 -2.39 -0.02 1.19 16 39 H 0.03 1.05 7.20 -2.39 -0.02 1.03 16 40 H 0.03 0.97 7.57 -2.39 -0.02 0.95 16 41 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -72.36 340.62 4.29 -68.07 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -0.09 Total: 9.44 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 7.74 Total: 9.73 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -5.10 Total: -101.39 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.14 Total: -26.75 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 1.88 Total: 40.90 kcal Total: -72.36 4.29 -68.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365228564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.792 kcal (2) G-P(sol) polarization free energy of solvation -72.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds