Wall clock time and date at job start Tue Mar 31 2020 09:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47038 * 2 1 4 4 N 1.46498 * 109.47084 * 119.99593 * 2 1 3 5 5 C 1.34775 * 119.99723 * 155.00110 * 4 2 1 6 6 O 1.21282 * 120.00482 * 0.02562 * 5 4 2 7 7 C 1.50705 * 119.99982 * 180.02562 * 5 4 2 8 8 N 1.46496 * 109.47333 * 179.97438 * 7 5 4 9 9 C 1.34776 * 120.00076 * 179.97438 * 8 7 5 10 10 O 1.21570 * 120.00026 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99790 * 180.02562 * 9 8 7 12 12 C 1.39455 * 119.99648 * 185.06510 * 11 9 8 13 13 C 1.38646 * 119.64673 * 185.35965 * 12 11 9 14 14 C 1.40816 * 118.67333 * 179.72003 * 13 12 11 15 15 C 1.41550 * 120.99671 * 180.25349 * 14 13 12 16 16 H 1.07994 * 120.00155 * 153.82644 * 15 14 13 17 17 C 1.40034 * 119.99833 * 333.81979 * 15 14 13 18 18 N 1.30737 * 119.99823 * 350.11068 * 17 15 14 19 19 Si 1.86794 * 119.99788 * 170.10602 * 17 15 14 20 20 H 1.48507 * 109.47266 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47020 * 120.00218 * 19 17 15 22 22 H 1.48496 * 109.47345 * 240.00214 * 19 17 15 23 23 C 1.41160 * 118.00747 * 0.27865 * 14 13 12 24 24 C 1.36589 * 119.12658 * 359.97438 * 23 14 13 25 25 N 1.32065 * 121.26146 * 0.02562 * 24 23 14 26 26 H 1.08994 * 109.47125 * 300.00286 * 1 2 3 27 27 H 1.08995 * 109.47029 * 60.00205 * 1 2 3 28 28 H 1.09003 * 109.46547 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47040 * 240.00225 * 2 1 3 30 30 H 1.09000 * 109.47219 * 59.99461 * 3 2 1 31 31 H 1.08995 * 109.47433 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.47053 * 300.00193 * 3 2 1 33 33 H 0.96996 * 120.00363 * 335.00194 * 4 2 1 34 34 H 1.09003 * 109.46854 * 60.00145 * 7 5 4 35 35 H 1.08999 * 109.47281 * 300.00097 * 7 5 4 36 36 H 0.97007 * 119.99744 * 0.02562 * 8 7 5 37 37 H 0.97002 * 120.00099 * 5.05532 * 11 9 8 38 38 H 1.07996 * 120.65950 * 359.97438 * 13 12 11 39 39 H 0.97006 * 119.99686 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.43978 * 179.97438 * 23 14 13 41 41 H 1.08004 * 119.37253 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 3.2403 -1.2590 1.1944 6 8 3.9359 -1.1986 0.2027 7 6 3.7425 -1.9699 2.4247 8 7 5.0853 -2.4974 2.1701 9 6 5.7374 -3.1749 3.1356 10 8 5.2111 -3.3488 4.2176 11 7 6.9730 -3.6598 2.9014 12 6 7.6051 -4.4503 3.8607 13 6 8.9169 -4.8526 3.6618 14 6 9.5372 -5.6455 4.6464 15 6 10.8762 -6.0792 4.4962 16 1 11.4732 -6.3006 5.3685 17 6 11.4268 -6.2212 3.2165 18 7 10.6582 -6.1429 2.1619 19 14 13.2594 -6.5223 3.0164 20 1 13.9024 -6.5690 4.3543 21 1 13.4753 -7.8152 2.3185 22 1 13.8575 -5.4227 2.2175 23 6 8.7835 -5.9953 5.7876 24 6 7.4945 -5.5560 5.8933 25 7 6.9440 -4.8133 4.9501 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.4623 -0.7386 1.9895 34 1 3.0699 -2.7921 2.6692 35 1 3.7790 -1.2698 3.2594 36 1 5.5053 -2.3583 1.3068 37 1 7.4225 -3.4590 2.0656 38 1 9.4536 -4.5602 2.7714 39 1 11.0396 -6.2409 1.2754 40 1 9.2202 -6.6023 6.5668 41 1 6.9143 -5.8209 6.7648 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413606076.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:05 Heat of formation + Delta-G solvation = -30.647420 kcal Electronic energy + Delta-G solvation = -23946.918640 eV Core-core repulsion = 20247.929834 eV Total energy + Delta-G solvation = -3698.988806 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.36322 -39.52008 -37.96799 -36.38848 -34.47888 -33.91996 -33.69195 -32.00968 -30.47280 -28.93745 -27.63532 -27.08830 -25.95257 -22.36628 -21.87519 -21.38535 -20.77114 -20.09418 -18.51594 -17.64393 -16.78325 -16.73816 -15.99881 -15.75950 -15.31533 -14.92936 -14.59280 -14.41781 -14.28812 -14.14848 -13.71097 -13.47015 -13.08636 -12.87266 -12.82725 -12.74409 -12.57594 -12.54458 -12.14365 -11.78804 -11.41657 -11.37411 -11.16348 -10.88563 -10.25866 -10.17831 -10.07586 -9.74118 -9.60511 -9.49092 -9.37131 -8.87546 -7.94267 -7.70351 -6.99681 -6.71404 -4.59745 2.32206 2.56755 2.71683 2.82691 3.04166 3.09464 3.24610 3.26699 3.85924 3.88543 4.33055 4.53085 4.62339 4.65875 4.74458 4.83173 5.15433 5.25581 5.30312 5.30531 5.36885 5.51666 5.68665 5.72612 5.86462 5.96416 6.13512 6.54441 6.57673 6.66009 6.83071 6.98556 7.13515 7.17131 7.32244 7.45930 7.52295 7.86695 7.90855 8.14295 8.41017 8.49370 8.75987 8.79256 9.17085 9.74990 10.12647 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.025175 B = 0.002498 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.945612 B =11208.170764 C =12127.866411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.136 3.864 3 C -0.165 4.165 4 N -0.725 5.725 5 C 0.512 3.488 6 O -0.535 6.535 7 C 0.125 3.875 8 N -0.745 5.745 9 C 0.696 3.304 10 O -0.537 6.537 11 N -0.665 5.665 12 C 0.354 3.646 13 C -0.242 4.242 14 C 0.142 3.858 15 C -0.453 4.453 16 H 0.082 0.918 17 C 0.074 3.926 18 N -0.794 5.794 19 Si 0.914 3.086 20 H -0.260 1.260 21 H -0.274 1.274 22 H -0.272 1.272 23 C -0.282 4.282 24 C 0.118 3.882 25 N -0.553 5.553 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.403 0.597 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.403 0.597 37 H 0.406 0.594 38 H 0.133 0.867 39 H 0.280 0.720 40 H 0.102 0.898 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.875 11.363 -6.200 19.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 C -0.223 4.223 4 N -0.378 5.378 5 C 0.298 3.702 6 O -0.412 6.412 7 C -0.004 4.004 8 N -0.407 5.407 9 C 0.396 3.604 10 O -0.408 6.408 11 N -0.313 5.313 12 C 0.128 3.872 13 C -0.268 4.268 14 C 0.134 3.866 15 C -0.485 4.485 16 H 0.100 0.900 17 C -0.144 4.144 18 N -0.421 5.421 19 Si 0.739 3.261 20 H -0.184 1.184 21 H -0.199 1.199 22 H -0.197 1.197 23 C -0.306 4.306 24 C -0.035 4.035 25 N -0.272 5.272 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.238 0.762 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.240 0.760 37 H 0.241 0.759 38 H 0.151 0.849 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.796 11.525 -6.088 20.479 hybrid contribution 1.770 -0.308 -0.810 1.971 sum -14.025 11.217 -6.898 19.238 Atomic orbital electron populations 1.22081 0.93963 1.02790 1.03021 1.20964 0.94052 0.93089 0.88754 1.22196 1.02300 0.95668 1.02133 1.46014 1.17745 1.56933 1.17134 1.20719 0.81510 0.78299 0.89678 1.90700 1.55979 1.59558 1.34941 1.20754 0.85508 0.99149 0.95001 1.44833 1.17176 1.61243 1.17401 1.15950 0.81462 0.78996 0.84019 1.90998 1.66645 1.60559 1.22615 1.42508 1.15867 1.52460 1.20463 1.17963 0.89000 0.91791 0.88436 1.21633 0.93150 1.06884 1.05095 1.17591 0.92735 0.86833 0.89468 1.19612 0.96480 1.39425 0.92969 0.90018 1.25955 1.00339 0.92568 0.95503 1.69753 1.36791 1.36020 0.99495 0.86160 0.81869 0.78593 0.79503 1.18371 1.19917 1.19715 1.21680 0.96331 1.09932 1.02676 1.21464 0.92643 0.93868 0.95558 1.67165 1.37874 1.19357 1.02823 0.91941 0.90867 0.91834 0.89317 0.92395 0.91949 0.91595 0.76221 0.88606 0.88660 0.76019 0.75910 0.84930 0.90876 0.88025 0.86019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 9.38 37.16 0.35 -0.37 16 2 C 0.14 0.95 3.18 -67.93 -0.22 0.73 16 3 C -0.16 -1.13 9.48 37.16 0.35 -0.78 16 4 N -0.73 -5.41 5.08 -53.80 -0.27 -5.69 16 5 C 0.51 5.57 7.86 -10.98 -0.09 5.48 16 6 O -0.54 -7.61 15.33 5.56 0.09 -7.52 16 7 C 0.12 1.46 6.15 -5.19 -0.03 1.43 16 8 N -0.74 -11.21 5.53 -66.42 -0.37 -11.58 16 9 C 0.70 13.83 8.51 -86.91 -0.74 13.09 16 10 O -0.54 -12.61 14.64 5.30 0.08 -12.53 16 11 N -0.67 -13.69 5.40 -15.86 -0.09 -13.78 16 12 C 0.35 8.81 7.41 -154.68 -1.15 7.67 16 13 C -0.24 -6.25 8.62 -38.46 -0.33 -6.58 16 14 C 0.14 3.79 5.60 -106.55 -0.60 3.19 16 15 C -0.45 -11.76 9.14 -37.65 -0.34 -12.10 16 16 H 0.08 2.03 7.87 -52.49 -0.41 1.62 16 17 C 0.07 1.81 5.31 -17.34 -0.09 1.72 16 18 N -0.79 -19.80 10.70 55.55 0.59 -19.20 16 19 Si 0.91 18.19 29.57 -169.99 -5.03 13.16 16 20 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 C -0.28 -7.00 9.85 -39.07 -0.38 -7.39 16 24 C 0.12 2.89 11.10 -18.05 -0.20 2.69 16 25 N -0.55 -14.40 7.90 -12.76 -0.10 -14.51 16 26 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.78 7.58 -51.93 -0.39 0.39 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.40 1.95 8.60 -40.82 -0.35 1.60 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.40 5.66 7.46 -40.82 -0.30 5.36 16 37 H 0.41 7.06 8.72 -40.82 -0.36 6.70 16 38 H 0.13 3.41 6.11 -52.49 -0.32 3.09 16 39 H 0.28 6.32 8.29 -40.82 -0.34 5.98 16 40 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 41 H 0.12 2.59 8.06 -52.48 -0.42 2.16 16 LS Contribution 352.94 15.07 5.32 5.32 Total: -1.00 -33.82 352.94 -8.75 -42.57 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -5.50 Total: 14.97 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: -3.47 Total: 8.79 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: -0.23 Total: -64.75 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.16 Total: -20.05 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.82 -8.75 -42.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413606076.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.923 kcal (2) G-P(sol) polarization free energy of solvation -33.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds