Wall clock time and date at job start Tue Mar 31 2020 09:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47038 * 2 1 4 4 N 1.46498 * 109.47084 * 119.99593 * 2 1 3 5 5 C 1.34775 * 119.99723 * 155.00110 * 4 2 1 6 6 O 1.21282 * 120.00482 * 0.02562 * 5 4 2 7 7 C 1.50705 * 119.99982 * 180.02562 * 5 4 2 8 8 N 1.46496 * 109.47333 * 179.97438 * 7 5 4 9 9 C 1.34776 * 120.00076 * 179.97438 * 8 7 5 10 10 O 1.21570 * 120.00026 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99790 * 180.02562 * 9 8 7 12 12 C 1.39455 * 119.99648 * 185.06510 * 11 9 8 13 13 C 1.38646 * 119.64673 * 185.35965 * 12 11 9 14 14 C 1.40816 * 118.67333 * 179.72003 * 13 12 11 15 15 C 1.41550 * 120.99671 * 180.25349 * 14 13 12 16 16 H 1.07994 * 120.00155 * 153.82644 * 15 14 13 17 17 C 1.40034 * 119.99833 * 333.81979 * 15 14 13 18 18 N 1.30737 * 119.99823 * 350.11068 * 17 15 14 19 19 Si 1.86794 * 119.99788 * 170.10602 * 17 15 14 20 20 H 1.48507 * 109.47266 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47020 * 120.00218 * 19 17 15 22 22 H 1.48496 * 109.47345 * 240.00214 * 19 17 15 23 23 C 1.41160 * 118.00747 * 0.27865 * 14 13 12 24 24 C 1.36589 * 119.12658 * 359.97438 * 23 14 13 25 25 N 1.32065 * 121.26146 * 0.02562 * 24 23 14 26 26 H 1.08994 * 109.47125 * 300.00286 * 1 2 3 27 27 H 1.08995 * 109.47029 * 60.00205 * 1 2 3 28 28 H 1.09003 * 109.46547 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47040 * 240.00225 * 2 1 3 30 30 H 1.09000 * 109.47219 * 59.99461 * 3 2 1 31 31 H 1.08995 * 109.47433 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.47053 * 300.00193 * 3 2 1 33 33 H 0.96996 * 120.00363 * 335.00194 * 4 2 1 34 34 H 1.09003 * 109.46854 * 60.00145 * 7 5 4 35 35 H 1.08999 * 109.47281 * 300.00097 * 7 5 4 36 36 H 0.97007 * 119.99744 * 0.02562 * 8 7 5 37 37 H 0.97002 * 120.00099 * 5.05532 * 11 9 8 38 38 H 1.07996 * 120.65950 * 359.97438 * 13 12 11 39 39 H 0.97006 * 119.99686 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.43978 * 179.97438 * 23 14 13 41 41 H 1.08004 * 119.37253 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 3.2403 -1.2590 1.1944 6 8 3.9359 -1.1986 0.2027 7 6 3.7425 -1.9699 2.4247 8 7 5.0853 -2.4974 2.1701 9 6 5.7374 -3.1749 3.1356 10 8 5.2111 -3.3488 4.2176 11 7 6.9730 -3.6598 2.9014 12 6 7.6051 -4.4503 3.8607 13 6 8.9169 -4.8526 3.6618 14 6 9.5372 -5.6455 4.6464 15 6 10.8762 -6.0792 4.4962 16 1 11.4732 -6.3006 5.3685 17 6 11.4268 -6.2212 3.2165 18 7 10.6582 -6.1429 2.1619 19 14 13.2594 -6.5223 3.0164 20 1 13.9024 -6.5690 4.3543 21 1 13.4753 -7.8152 2.3185 22 1 13.8575 -5.4227 2.2175 23 6 8.7835 -5.9953 5.7876 24 6 7.4945 -5.5560 5.8933 25 7 6.9440 -4.8133 4.9501 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.4623 -0.7386 1.9895 34 1 3.0699 -2.7921 2.6692 35 1 3.7790 -1.2698 3.2594 36 1 5.5053 -2.3583 1.3068 37 1 7.4225 -3.4590 2.0656 38 1 9.4536 -4.5602 2.7714 39 1 11.0396 -6.2409 1.2754 40 1 9.2202 -6.6023 6.5668 41 1 6.9143 -5.8209 6.7648 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413606076.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:04 Heat of formation + Delta-G solvation = -54.960281 kcal Electronic energy + Delta-G solvation = -23947.972925 eV Core-core repulsion = 20247.929834 eV Total energy + Delta-G solvation = -3700.043091 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.59861 -40.85747 -39.70776 -37.14996 -36.18670 -35.48919 -35.35120 -32.76745 -32.39069 -30.61100 -28.33577 -28.09224 -27.86622 -23.88422 -23.61040 -22.44613 -21.70154 -21.58544 -19.95751 -19.42003 -18.15673 -17.67128 -17.21516 -17.02139 -16.92733 -16.18899 -16.03077 -15.90243 -15.87052 -15.20718 -15.15271 -14.64873 -14.49011 -14.31955 -14.24297 -13.97647 -13.51747 -13.20535 -13.14270 -13.04761 -12.86205 -12.68514 -12.30530 -12.08314 -11.91981 -11.85551 -11.52002 -11.34098 -11.18424 -11.09685 -10.29498 -10.12800 -9.90251 -9.62677 -8.84933 -8.56552 -6.56401 0.84079 1.01772 1.41411 1.42317 1.44356 1.56640 1.57067 2.18723 2.21026 2.24401 2.85865 3.17255 3.60840 3.77721 3.96247 4.13158 4.15901 4.32420 4.35310 4.36938 4.73125 4.74064 4.75951 4.84745 4.93668 4.94369 5.00735 5.11486 5.26171 5.26361 5.30537 5.33692 5.48114 5.51505 5.66513 5.79569 5.99190 6.27109 6.42678 6.57736 6.80329 6.84659 6.91816 7.10085 7.55675 7.88066 8.30511 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.025175 B = 0.002498 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.945612 B =11208.170764 C =12127.866411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.132 3.868 3 C -0.161 4.161 4 N -0.707 5.707 5 C 0.517 3.483 6 O -0.573 6.573 7 C 0.121 3.879 8 N -0.729 5.729 9 C 0.697 3.303 10 O -0.573 6.573 11 N -0.661 5.661 12 C 0.352 3.648 13 C -0.260 4.260 14 C 0.113 3.887 15 C -0.481 4.481 16 H 0.084 0.916 17 C 0.035 3.965 18 N -0.818 5.818 19 Si 0.990 3.010 20 H -0.257 1.257 21 H -0.267 1.267 22 H -0.264 1.264 23 C -0.294 4.294 24 C 0.114 3.886 25 N -0.576 5.576 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.079 0.921 33 H 0.419 0.581 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.410 0.590 37 H 0.419 0.581 38 H 0.127 0.873 39 H 0.290 0.710 40 H 0.117 0.883 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.467 11.946 -6.610 20.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.028 3.972 3 C -0.219 4.219 4 N -0.360 5.360 5 C 0.303 3.697 6 O -0.452 6.452 7 C -0.006 4.006 8 N -0.389 5.389 9 C 0.396 3.604 10 O -0.448 6.448 11 N -0.310 5.310 12 C 0.124 3.876 13 C -0.286 4.286 14 C 0.104 3.896 15 C -0.512 4.512 16 H 0.102 0.898 17 C -0.182 4.182 18 N -0.444 5.444 19 Si 0.811 3.189 20 H -0.181 1.181 21 H -0.191 1.191 22 H -0.188 1.188 23 C -0.318 4.318 24 C -0.039 4.039 25 N -0.296 5.296 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.256 0.744 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.247 0.753 37 H 0.256 0.744 38 H 0.145 0.855 39 H 0.101 0.899 40 H 0.135 0.865 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.461 12.151 -6.526 21.476 hybrid contribution 1.852 -0.448 -0.722 2.038 sum -14.609 11.703 -7.248 20.073 Atomic orbital electron populations 1.22035 0.91485 1.03244 1.04298 1.21080 0.95876 0.92736 0.87518 1.22165 1.00511 0.95786 1.03468 1.45927 1.16582 1.55460 1.18056 1.20528 0.82217 0.78285 0.88686 1.90693 1.57257 1.61238 1.36024 1.20980 0.83849 0.99840 0.95962 1.44690 1.18032 1.59731 1.16484 1.16026 0.81091 0.79024 0.84249 1.90966 1.67360 1.62142 1.24327 1.42424 1.16372 1.51934 1.20275 1.18151 0.89004 0.91644 0.88760 1.21603 0.93808 1.07957 1.05205 1.18035 0.93677 0.87405 0.90458 1.19899 0.96717 1.40528 0.94082 0.89752 1.26842 1.05011 0.91691 0.94607 1.69795 1.38898 1.35463 1.00251 0.85025 0.75600 0.78761 0.79527 1.18074 1.19148 1.18822 1.21873 0.96631 1.10487 1.02811 1.21948 0.92849 0.93055 0.96089 1.67293 1.38441 1.20316 1.03545 0.90494 0.89773 0.91794 0.91383 0.91179 0.94625 0.90199 0.74395 0.87600 0.87437 0.75260 0.74429 0.85489 0.89869 0.86470 0.83158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.38 71.98 0.68 -0.31 16 2 C 0.13 1.66 3.18 44.99 0.14 1.80 16 3 C -0.16 -1.99 9.48 71.98 0.68 -1.31 16 4 N -0.71 -9.44 5.08 -442.53 -2.25 -11.69 16 5 C 0.52 10.78 7.86 87.66 0.69 11.47 16 6 O -0.57 -16.19 15.33 -3.04 -0.05 -16.24 16 7 C 0.12 2.72 6.15 85.64 0.53 3.25 16 8 N -0.73 -21.57 5.53 -482.31 -2.67 -24.24 16 9 C 0.70 27.62 8.51 179.05 1.52 29.14 16 10 O -0.57 -26.93 14.64 -3.94 -0.06 -26.99 16 11 N -0.66 -27.49 5.40 -322.37 -1.74 -29.23 16 12 C 0.35 17.79 7.41 132.76 0.98 18.77 16 13 C -0.26 -13.73 8.62 23.00 0.20 -13.53 16 14 C 0.11 6.11 5.60 -21.11 -0.12 5.99 16 15 C -0.48 -25.21 9.14 23.52 0.21 -25.00 16 16 H 0.08 4.22 7.87 -2.91 -0.02 4.20 16 17 C 0.03 1.67 5.31 85.29 0.45 2.12 16 18 N -0.82 -40.84 10.70 21.84 0.23 -40.61 16 19 Si 0.99 36.63 29.57 68.60 2.03 38.66 16 20 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 21 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 22 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 23 C -0.29 -14.73 9.85 22.60 0.22 -14.51 16 24 C 0.11 5.55 11.10 84.27 0.94 6.49 16 25 N -0.58 -30.24 7.90 -194.27 -1.53 -31.78 16 26 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.07 1.17 7.58 -2.39 -0.02 1.15 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.42 3.06 8.60 -92.71 -0.80 2.26 16 34 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.41 11.36 7.46 -92.70 -0.69 10.67 16 37 H 0.42 14.72 8.72 -92.71 -0.81 13.92 16 38 H 0.13 6.72 6.11 -2.91 -0.02 6.70 16 39 H 0.29 12.98 8.29 -92.70 -0.77 12.21 16 40 H 0.12 5.32 8.06 -2.91 -0.02 5.30 16 41 H 0.15 6.26 8.06 -2.91 -0.02 6.23 16 Total: -1.00 -73.54 352.94 -0.10 -73.64 By element: Atomic # 1 Polarization: 45.30 SS G_CDS: -1.21 Total: 44.09 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: 7.13 Total: 24.37 kcal Atomic # 7 Polarization: -129.59 SS G_CDS: -7.95 Total: -137.54 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -0.10 Total: -43.23 kcal Atomic # 14 Polarization: 36.63 SS G_CDS: 2.03 Total: 38.66 kcal Total: -73.54 -0.10 -73.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413606076.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.684 kcal (2) G-P(sol) polarization free energy of solvation -73.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds