Wall clock time and date at job start Tue Mar 31 2020 09:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47738 * 2 1 4 4 C 1.53004 * 109.47067 * 120.00225 * 2 1 3 5 5 H 1.08997 * 109.46940 * 180.77406 * 4 2 1 6 6 N 1.46495 * 109.47023 * 300.77634 * 4 2 1 7 7 C 1.34779 * 120.00307 * 204.72431 * 6 4 2 8 8 O 1.21585 * 119.99421 * 0.27784 * 7 6 4 9 9 N 1.34771 * 120.00360 * 180.27930 * 7 6 4 10 10 C 1.39457 * 119.99998 * 174.62214 * 9 7 6 11 11 C 1.38645 * 119.64663 * 185.35066 * 10 9 7 12 12 C 1.40823 * 118.67229 * 179.97438 * 11 10 9 13 13 C 1.41549 * 120.99562 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00004 * 148.12505 * 13 12 11 15 15 C 1.40032 * 119.99979 * 328.12562 * 13 12 11 16 16 N 1.30739 * 119.99800 * 164.24238 * 15 13 12 17 17 Si 1.86804 * 119.99868 * 344.23933 * 15 13 12 18 18 H 1.48500 * 109.46921 * 92.34185 * 17 15 13 19 19 H 1.48491 * 109.46905 * 212.34447 * 17 15 13 20 20 H 1.48502 * 109.47118 * 332.34457 * 17 15 13 21 21 C 1.41161 * 118.00592 * 359.97438 * 12 11 10 22 22 C 1.36595 * 119.12925 * 0.02562 * 21 12 11 23 23 N 1.32072 * 121.25558 * 359.73947 * 22 21 12 24 24 C 1.50702 * 109.47048 * 60.77934 * 4 2 1 25 25 N 1.34769 * 120.00404 * 72.61611 * 24 4 2 26 26 O 1.21280 * 119.99451 * 252.61352 * 24 4 2 27 27 H 1.08998 * 109.46527 * 300.00179 * 1 2 3 28 28 H 1.09003 * 109.46847 * 59.99680 * 1 2 3 29 29 H 1.08991 * 109.47348 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47063 * 239.99862 * 2 1 3 31 31 H 1.08998 * 109.47731 * 184.61741 * 3 2 1 32 32 H 1.09004 * 109.46897 * 304.62038 * 3 2 1 33 33 H 1.09005 * 109.47180 * 64.61568 * 3 2 1 34 34 H 0.97002 * 119.99953 * 25.00309 * 6 4 2 35 35 H 0.97001 * 119.99848 * 354.61434 * 9 7 6 36 36 H 1.07999 * 120.66483 * 0.02562 * 11 10 9 37 37 H 0.96998 * 119.99664 * 180.02562 * 16 15 13 38 38 H 1.07998 * 120.43733 * 179.97438 * 21 12 11 39 39 H 1.07999 * 119.36750 * 179.97438 * 22 21 12 40 40 H 0.97000 * 120.00029 * 5.05138 * 25 24 4 41 41 H 0.97000 * 120.00530 * 185.06563 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1299 -0.7093 1.2562 6 7 1.5365 -0.0417 2.4453 7 6 2.2039 -0.1468 3.6115 8 8 3.2267 -0.8016 3.6696 9 7 1.7376 0.4739 4.7132 10 6 2.3637 0.2749 5.9433 11 6 1.8135 0.8267 7.0901 12 6 2.4625 0.6124 8.3214 13 6 1.9441 1.1532 9.5224 14 1 2.0812 0.6265 10.4552 15 6 1.2535 2.3712 9.5010 16 7 0.5165 2.7228 10.5221 17 14 1.3853 3.4937 8.0137 18 1 0.2815 3.1927 7.0670 19 1 1.2895 4.9092 8.4519 20 1 2.6898 3.2713 7.3398 21 6 3.6454 -0.1579 8.3220 22 6 4.1119 -0.6609 7.1408 23 7 3.4749 -0.4440 6.0044 24 6 1.5535 -2.1476 1.2395 25 7 2.0893 -3.0366 0.3800 26 8 0.6797 -2.4954 2.0054 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 3.1270 1.4435 -0.0827 32 1 1.6108 1.9796 -0.8457 33 1 1.7459 1.9318 0.9285 34 1 0.7204 0.4808 2.3989 35 1 0.9665 1.0591 4.6504 36 1 0.9050 1.4084 7.0402 37 1 0.0378 3.5663 10.5071 38 1 4.1751 -0.3463 9.2441 39 1 5.0168 -1.2504 7.1368 40 1 2.8374 -2.7786 -0.1810 41 1 1.7268 -3.9345 0.3221 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413608275.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:25 Heat of formation + Delta-G solvation = -60.869571 kcal Electronic energy + Delta-G solvation = -25271.209567 eV Core-core repulsion = 21570.910231 eV Total energy + Delta-G solvation = -3700.299337 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.88752 -40.84101 -39.67261 -37.48331 -36.10488 -35.56505 -34.70654 -33.85404 -33.15444 -30.69019 -28.32570 -28.07900 -27.83354 -24.16360 -23.81000 -22.46408 -21.85830 -20.71905 -19.99229 -19.50614 -18.68176 -17.89993 -17.84082 -17.22367 -16.55128 -16.33470 -16.20641 -16.07878 -15.88880 -15.30493 -15.12372 -14.99511 -14.77088 -14.75405 -14.41843 -14.06893 -13.50581 -13.41263 -12.96862 -12.78145 -12.63599 -12.61784 -12.22484 -11.88174 -11.86262 -11.81284 -11.61812 -11.42758 -11.29051 -11.17158 -10.65751 -10.15278 -10.08628 -9.70932 -9.00642 -8.94723 -6.72311 0.59802 0.76400 1.23819 1.38196 1.41593 1.48451 1.61609 2.10312 2.13662 2.60383 2.73512 3.06608 3.52739 3.61400 3.84546 3.93057 3.99935 4.20128 4.42828 4.49512 4.57233 4.61136 4.66431 4.76396 4.80561 4.93290 4.99584 5.11578 5.12617 5.28506 5.33065 5.34916 5.43442 5.51905 5.65838 5.81055 5.90081 6.10797 6.27711 6.43783 6.52607 6.69405 6.83353 7.33151 7.47879 7.73657 8.11222 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.019953 B = 0.003845 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.938553 B = 7279.783348 C = 8004.770263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.083 4.083 3 C -0.146 4.146 4 C 0.149 3.851 5 H 0.112 0.888 6 N -0.709 5.709 7 C 0.696 3.304 8 O -0.570 6.570 9 N -0.664 5.664 10 C 0.384 3.616 11 C -0.327 4.327 12 C 0.117 3.883 13 C -0.473 4.473 14 H 0.067 0.933 15 C 0.054 3.946 16 N -0.836 5.836 17 Si 0.966 3.034 18 H -0.245 1.245 19 H -0.273 1.273 20 H -0.265 1.265 21 C -0.281 4.281 22 C 0.129 3.871 23 N -0.570 5.570 24 C 0.502 3.498 25 N -0.835 5.835 26 O -0.585 6.585 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.043 0.957 30 H 0.119 0.881 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.409 0.591 35 H 0.420 0.580 36 H 0.119 0.881 37 H 0.298 0.702 38 H 0.122 0.878 39 H 0.159 0.841 40 H 0.418 0.582 41 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.041 -0.413 -25.724 25.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.102 4.102 3 C -0.204 4.204 4 C 0.039 3.961 5 H 0.129 0.871 6 N -0.367 5.367 7 C 0.396 3.604 8 O -0.444 6.444 9 N -0.313 5.313 10 C 0.153 3.847 11 C -0.352 4.352 12 C 0.108 3.892 13 C -0.504 4.504 14 H 0.085 0.915 15 C -0.163 4.163 16 N -0.461 5.461 17 Si 0.789 3.211 18 H -0.170 1.170 19 H -0.199 1.199 20 H -0.189 1.189 21 C -0.305 4.305 22 C -0.023 4.023 23 N -0.290 5.290 24 C 0.285 3.715 25 N -0.399 5.399 26 O -0.465 6.465 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.062 0.938 30 H 0.137 0.863 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.247 0.753 35 H 0.258 0.742 36 H 0.136 0.864 37 H 0.109 0.891 38 H 0.140 0.860 39 H 0.176 0.824 40 H 0.250 0.750 41 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 0.582 -1.283 -25.794 25.833 hybrid contribution -1.011 0.739 0.931 1.560 sum -0.429 -0.544 -24.863 24.873 Atomic orbital electron populations 1.21914 0.94331 1.01748 1.03089 1.21396 0.96743 0.97619 0.94446 1.21842 1.01681 0.94095 1.02753 1.20991 1.00951 0.88059 0.86092 0.87065 1.44694 1.29723 1.55182 1.07093 1.16160 0.83497 0.80055 0.80716 1.90972 1.25321 1.44276 1.83832 1.42472 1.33997 1.49712 1.05115 1.17976 0.90248 0.92549 0.83883 1.21327 1.05249 1.16102 0.92552 1.17875 0.89833 0.89516 0.91968 1.19464 1.30429 1.06078 0.94395 0.91513 1.26819 0.90317 0.99360 0.99813 1.69649 1.20621 1.23253 1.32590 0.85478 0.80937 0.76368 0.78288 1.16976 1.19930 1.18911 1.21911 0.99440 1.09810 0.99332 1.22113 0.97841 0.95286 0.87054 1.67441 1.10078 1.21881 1.29568 1.21535 0.81247 0.89502 0.79176 1.43648 1.38037 1.15712 1.42548 1.90739 1.34006 1.80897 1.40827 0.92910 0.89611 0.93829 0.86261 0.91985 0.90062 0.93208 0.75288 0.74212 0.86377 0.89105 0.85993 0.82361 0.75035 0.76232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.78 71.98 0.63 -1.24 16 2 C -0.08 -0.93 2.76 -10.79 -0.03 -0.96 16 3 C -0.15 -1.52 9.11 71.98 0.66 -0.86 16 4 C 0.15 3.03 2.11 44.25 0.09 3.13 16 5 H 0.11 2.36 7.58 -2.39 -0.02 2.34 16 6 N -0.71 -18.30 3.77 -461.42 -1.74 -20.04 16 7 C 0.70 25.83 8.48 179.06 1.52 27.35 16 8 O -0.57 -25.79 14.27 -3.98 -0.06 -25.84 16 9 N -0.66 -25.26 5.40 -322.37 -1.74 -27.00 16 10 C 0.38 18.03 7.42 132.76 0.99 19.01 16 11 C -0.33 -15.83 7.13 23.00 0.16 -15.66 16 12 C 0.12 6.06 5.09 -21.11 -0.11 5.95 16 13 C -0.47 -26.13 9.64 23.52 0.23 -25.90 16 14 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 15 C 0.05 2.81 5.45 85.29 0.46 3.27 16 16 N -0.84 -44.10 13.92 21.84 0.30 -43.80 16 17 Si 0.97 41.11 24.56 68.60 1.68 42.80 16 18 H -0.25 -9.37 6.62 99.48 0.66 -8.71 16 19 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 20 H -0.26 -12.00 6.92 99.48 0.69 -11.31 16 21 C -0.28 -13.52 9.85 22.60 0.22 -13.30 16 22 C 0.13 5.92 11.10 84.27 0.94 6.86 16 23 N -0.57 -28.24 7.86 -194.27 -1.53 -29.77 16 24 C 0.50 12.20 6.12 87.66 0.54 12.74 16 25 N -0.83 -12.06 8.87 -173.54 -1.54 -13.60 16 26 O -0.59 -20.60 17.32 -3.03 -0.05 -20.65 16 27 H 0.05 0.71 6.47 -2.39 -0.02 0.69 16 28 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.04 0.69 7.24 -2.39 -0.02 0.68 16 30 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.05 0.65 7.37 -2.38 -0.02 0.63 16 34 H 0.41 8.44 6.67 -92.71 -0.62 7.82 16 35 H 0.42 12.64 8.72 -92.71 -0.81 11.83 16 36 H 0.12 5.39 4.87 -2.91 -0.01 5.38 16 37 H 0.30 13.99 8.29 -92.71 -0.77 13.22 16 38 H 0.12 5.40 8.06 -2.91 -0.02 5.38 16 39 H 0.16 6.14 8.06 -2.91 -0.02 6.11 16 40 H 0.42 2.93 8.83 -92.71 -0.82 2.11 16 41 H 0.41 5.29 8.93 -92.71 -0.83 4.46 16 Total: -1.00 -80.16 341.35 -0.39 -80.55 By element: Atomic # 1 Polarization: 39.00 SS G_CDS: -2.02 Total: 36.98 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: 6.30 Total: 20.38 kcal Atomic # 7 Polarization: -127.97 SS G_CDS: -6.24 Total: -134.21 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: -0.11 Total: -46.49 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 1.68 Total: 42.80 kcal Total: -80.16 -0.39 -80.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413608275.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.682 kcal (2) G-P(sol) polarization free energy of solvation -80.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds