Wall clock time and date at job start Tue Mar 31 2020 09:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46803 * 2 1 4 4 N 1.46497 * 109.47298 * 179.97438 * 3 2 1 5 5 C 1.46762 * 124.35012 * 89.99669 * 4 3 2 6 6 C 1.54481 * 105.47503 * 163.00764 * 5 4 3 7 7 H 1.09005 * 110.97188 * 267.26327 * 6 5 4 8 8 C 1.50696 * 110.97306 * 143.53615 * 6 5 4 9 9 O 1.21308 * 119.99669 * 359.97438 * 8 6 5 10 10 N 1.34777 * 120.00285 * 180.02562 * 8 6 5 11 11 C 1.40593 * 120.00037 * 179.97438 * 10 8 6 12 12 C 1.40654 * 126.08232 * 0.02562 * 11 10 8 13 13 N 1.30910 * 108.38371 * 179.69694 * 12 11 10 14 14 N 1.40063 * 108.40657 * 0.44339 * 13 12 11 15 15 C 1.37326 * 126.06574 * 179.81324 * 14 13 12 16 16 H 1.08001 * 120.00241 * 189.75405 * 15 14 13 17 17 C 1.38987 * 120.00093 * 9.76123 * 15 14 13 18 18 N 1.31289 * 119.99976 * 21.11796 * 17 15 14 19 19 Si 1.86800 * 119.99913 * 201.11718 * 17 15 14 20 20 H 1.48503 * 109.47229 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47505 * 239.99717 * 19 17 15 22 22 H 1.48507 * 109.47126 * 119.99692 * 19 17 15 23 23 C 1.35680 * 126.08450 * 179.97438 * 11 10 8 24 24 C 1.54631 * 101.76259 * 25.41627 * 6 5 4 25 25 C 1.34417 * 124.34951 * 270.02753 * 4 3 2 26 26 O 1.21288 * 124.94228 * 0.34235 * 25 4 3 27 27 H 1.09002 * 109.47146 * 60.00311 * 1 2 3 28 28 H 1.08997 * 109.46954 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47613 * 300.00030 * 1 2 3 30 30 H 1.09000 * 109.47777 * 240.00421 * 2 1 3 31 31 H 1.08996 * 109.47529 * 119.99641 * 2 1 3 32 32 H 1.09002 * 109.47324 * 59.99881 * 3 2 1 33 33 H 1.09002 * 109.47015 * 299.99769 * 3 2 1 34 34 H 1.09002 * 110.24598 * 44.00828 * 5 4 3 35 35 H 1.08997 * 110.24756 * 282.00821 * 5 4 3 36 36 H 0.97001 * 119.99644 * 359.97438 * 10 8 6 37 37 H 1.07999 * 125.80827 * 0.02562 * 12 11 10 38 38 H 0.97001 * 120.00356 * 5.89180 * 18 17 15 39 39 H 1.08006 * 126.24090 * 0.02562 * 23 11 10 40 40 H 1.09002 * 110.48729 * 93.88591 * 24 6 5 41 41 H 1.09001 * 110.48590 * 216.52691 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.3335 1.4425 -1.2107 6 6 5.7413 1.8778 -0.7471 7 1 5.8678 2.9562 -0.8437 8 6 6.8121 1.1417 -1.5103 9 8 6.5038 0.3313 -2.3587 10 7 8.1122 1.3829 -1.2495 11 6 9.1112 0.6956 -1.9612 12 6 8.8999 -0.2646 -2.9670 13 7 10.0661 -0.6750 -3.3975 14 7 11.0639 -0.0035 -2.6796 15 6 12.4188 -0.1625 -2.8368 16 1 13.1007 0.2843 -2.1285 17 6 12.9126 -0.8982 -3.9076 18 7 12.1685 -1.0877 -4.9726 19 14 14.6350 -1.6173 -3.8316 20 1 15.2626 -1.2627 -2.5332 21 1 15.4514 -1.0654 -4.9425 22 1 14.5605 -3.0950 -3.9587 23 6 10.4505 0.8414 -1.8006 24 6 5.7293 1.4522 0.7394 25 6 4.2628 1.4424 1.1107 26 8 3.8335 1.4360 2.2450 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6765 1.9564 -0.8900 34 1 3.9393 2.1528 -1.9375 35 1 4.3709 0.4422 -1.6420 36 1 8.3587 2.0306 -0.5709 37 1 7.9391 -0.6017 -3.3270 38 1 11.3091 -0.6445 -5.0490 39 1 10.9417 1.5048 -1.1041 40 1 6.1587 0.4570 0.8547 41 1 6.2721 2.1757 1.3478 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433625325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:12:39 Heat of formation + Delta-G solvation = 2.133260 kcal Electronic energy + Delta-G solvation = -24432.028070 eV Core-core repulsion = 20734.460741 eV Total energy + Delta-G solvation = -3697.567329 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.98169 -39.98458 -38.73587 -36.53930 -35.02083 -34.49706 -33.33416 -31.71564 -30.28417 -28.16024 -27.74563 -26.50432 -24.78869 -23.37705 -22.04698 -21.09806 -20.34967 -19.60264 -19.49619 -18.18989 -17.30595 -16.99419 -16.11767 -15.83263 -15.40719 -15.02629 -14.75648 -14.71048 -14.09499 -13.96766 -13.82154 -13.72821 -13.66951 -13.18726 -13.14699 -12.88971 -12.44906 -12.08344 -11.92798 -11.77082 -11.68972 -11.55389 -11.46291 -11.14811 -11.00261 -10.43183 -10.40224 -10.20017 -10.09097 -9.48583 -9.36289 -9.17209 -8.91356 -8.31011 -7.06511 -6.93317 -4.34835 2.37825 2.59321 2.71643 3.07777 3.14957 3.31536 3.36266 3.50721 3.90701 4.04910 4.09255 4.22336 4.48629 4.62105 4.66822 4.69111 4.76194 4.93744 4.95880 5.11817 5.12648 5.24864 5.30889 5.35959 5.47108 5.53783 5.71098 5.75440 5.80166 5.94799 6.07393 6.21041 6.30778 6.68195 6.82542 6.86684 6.92071 7.46945 7.75907 7.95155 7.98888 8.22780 8.46232 8.61223 9.18354 9.34802 10.28657 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.035135 B = 0.002511 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.724308 B =11149.056710 C =11553.009521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.127 3.873 4 N -0.619 5.619 5 C 0.117 3.883 6 C -0.119 4.119 7 H 0.115 0.885 8 C 0.510 3.490 9 O -0.532 6.532 10 N -0.618 5.618 11 C -0.061 4.061 12 C -0.012 4.012 13 N -0.337 5.337 14 N -0.138 5.138 15 C -0.398 4.398 16 H 0.112 0.888 17 C 0.023 3.977 18 N -0.798 5.798 19 Si 1.090 2.910 20 H -0.278 1.278 21 H -0.278 1.278 22 H -0.275 1.275 23 C -0.082 4.082 24 C -0.146 4.146 25 C 0.521 3.479 26 O -0.533 6.533 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.400 0.600 37 H 0.179 0.821 38 H 0.310 0.690 39 H 0.148 0.852 40 H 0.111 0.889 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.697 7.493 8.305 18.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C 0.005 3.995 4 N -0.353 5.353 5 C -0.006 4.006 6 C -0.141 4.141 7 H 0.133 0.867 8 C 0.295 3.705 9 O -0.409 6.409 10 N -0.259 5.259 11 C -0.166 4.166 12 C -0.185 4.185 13 N -0.171 5.171 14 N 0.097 4.903 15 C -0.530 4.530 16 H 0.130 0.870 17 C -0.198 4.198 18 N -0.425 5.425 19 Si 0.913 3.087 20 H -0.204 1.204 21 H -0.204 1.204 22 H -0.200 1.200 23 C -0.233 4.233 24 C -0.186 4.186 25 C 0.309 3.691 26 O -0.410 6.410 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.233 0.767 37 H 0.196 0.804 38 H 0.126 0.874 39 H 0.166 0.834 40 H 0.129 0.871 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.602 5.200 6.606 15.991 hybrid contribution -1.383 2.006 1.777 3.015 sum -14.985 7.206 8.382 18.621 Atomic orbital electron populations 1.21686 0.94968 1.02118 1.01878 1.21933 0.96268 0.97085 1.02981 1.21453 0.77642 0.97250 1.03134 1.48352 1.06330 1.73267 1.07350 1.22011 0.87741 1.04166 0.86697 1.22174 0.94655 1.02183 0.95063 0.86684 1.19792 0.82787 0.83776 0.84194 1.90612 1.81529 1.35117 1.33633 1.42432 1.04187 1.41035 1.38283 1.17162 0.86684 1.07291 1.05475 1.23823 0.97218 0.99218 0.98226 1.77486 0.94861 1.22612 1.22150 1.44660 1.05375 1.20412 1.19862 1.20937 0.77526 1.39153 1.15433 0.87006 1.26782 1.07179 0.95019 0.90775 1.70286 1.14375 1.32900 1.24928 0.83236 0.71754 0.77311 0.76421 1.20352 1.20411 1.20029 1.21270 0.91168 1.04891 1.05983 1.22366 0.95402 1.05675 0.95160 1.20783 0.88980 0.74989 0.84374 1.90724 1.78580 1.50618 1.21105 0.92530 0.92341 0.92544 0.91403 0.91537 0.90024 0.90219 0.89729 0.88690 0.76711 0.80387 0.87387 0.83430 0.87072 0.87163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.15 0.37 -0.63 16 2 C -0.14 -1.24 6.26 -26.73 -0.17 -1.40 16 3 C 0.13 1.09 5.93 -4.04 -0.02 1.07 16 4 N -0.62 -6.36 2.93 -172.41 -0.51 -6.87 16 5 C 0.12 1.15 6.71 -3.12 -0.02 1.13 16 6 C -0.12 -1.17 3.54 -90.14 -0.32 -1.49 16 7 H 0.12 0.85 8.14 -51.93 -0.42 0.42 16 8 C 0.51 7.51 7.03 -10.99 -0.08 7.43 16 9 O -0.53 -9.90 12.66 5.53 0.07 -9.83 16 10 N -0.62 -9.62 5.47 -10.00 -0.05 -9.68 16 11 C -0.06 -1.31 6.90 -83.84 -0.58 -1.88 16 12 C -0.01 -0.30 10.85 -17.03 -0.18 -0.48 16 13 N -0.34 -9.35 9.69 30.80 0.30 -9.05 16 14 N -0.14 -3.66 3.64 -11.41 -0.04 -3.70 16 15 C -0.40 -10.43 10.12 -14.81 -0.15 -10.58 16 16 H 0.11 2.67 7.92 -52.49 -0.42 2.25 16 17 C 0.02 0.60 5.38 -17.51 -0.09 0.51 16 18 N -0.80 -22.70 13.25 55.49 0.74 -21.96 16 19 Si 1.09 21.75 29.97 -169.99 -5.09 16.66 16 20 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 21 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 C -0.08 -1.84 11.49 -16.40 -0.19 -2.03 16 24 C -0.15 -1.44 6.41 -26.74 -0.17 -1.61 16 25 C 0.52 6.36 8.02 -10.86 -0.09 6.27 16 26 O -0.53 -8.36 17.59 5.55 0.10 -8.26 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.74 7.93 -51.93 -0.41 0.33 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.10 1.11 6.96 -51.93 -0.36 0.75 16 36 H 0.40 4.65 8.83 -40.82 -0.36 4.28 16 37 H 0.18 4.31 5.92 -52.49 -0.31 4.00 16 38 H 0.31 9.23 6.35 -40.82 -0.26 8.97 16 39 H 0.15 2.79 8.06 -52.48 -0.42 2.37 16 40 H 0.11 1.20 7.89 -51.93 -0.41 0.79 16 41 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 348.21 15.07 5.25 5.25 Total: -1.00 -34.22 348.21 -6.49 -40.71 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -5.55 Total: 10.45 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -1.70 Total: -3.71 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.43 Total: -51.26 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.17 Total: -18.09 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.09 Total: 16.66 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.22 -6.49 -40.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433625325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.843 kcal (2) G-P(sol) polarization free energy of solvation -34.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds