Wall clock time and date at job start Tue Mar 31 2020 09:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47043 * 2 1 4 4 H 1.08995 * 109.47354 * 304.99789 * 3 2 1 5 5 C 1.53004 * 109.46998 * 185.00009 * 3 2 1 6 6 N 1.46499 * 109.46970 * 184.99942 * 5 3 2 7 7 C 1.34776 * 120.00070 * 179.97438 * 6 5 3 8 8 O 1.21280 * 119.99712 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.00308 * 179.97438 * 7 6 5 10 10 H 1.08991 * 112.55017 * 309.64254 * 9 7 6 11 11 C 1.52886 * 113.16523 * 179.77235 * 9 7 6 12 12 C 1.51438 * 84.73609 * 244.77949 * 11 9 7 13 13 C 1.38966 * 145.48980 * 180.36500 * 12 11 9 14 14 C 1.37939 * 120.35216 * 180.09599 * 13 12 11 15 15 C 1.38463 * 120.15028 * 359.48487 * 14 13 12 16 16 F 1.35101 * 120.15317 * 180.27914 * 15 14 13 17 17 C 1.38403 * 119.69588 * 0.25842 * 15 14 13 18 18 C 1.38198 * 120.10425 * 359.97438 * 17 15 14 19 19 N 1.46497 * 109.46955 * 65.00052 * 3 2 1 20 20 C 1.36934 * 120.00436 * 274.99925 * 19 3 2 21 21 H 1.08005 * 119.99291 * 359.97438 * 20 19 3 22 22 C 1.38808 * 120.00670 * 180.02562 * 20 19 3 23 23 N 1.31619 * 119.99840 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00160 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47119 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47047 * 120.00075 * 24 22 20 27 27 H 1.48501 * 109.46961 * 239.99492 * 24 22 20 28 28 H 1.09004 * 109.47235 * 59.99908 * 1 2 3 29 29 H 1.08999 * 109.47569 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47458 * 300.00269 * 1 2 3 31 31 H 1.09003 * 109.47035 * 240.00346 * 2 1 3 32 32 H 1.08997 * 109.47320 * 119.99719 * 2 1 3 33 33 H 1.08995 * 109.47022 * 65.00279 * 5 3 2 34 34 H 1.09002 * 109.47052 * 304.99826 * 5 3 2 35 35 H 0.96999 * 120.00229 * 0.02562 * 6 5 3 36 36 H 1.09000 * 113.98865 * 358.73076 * 11 9 7 37 37 H 1.09005 * 113.98200 * 130.67826 * 11 9 7 38 38 H 1.08000 * 119.82834 * 359.83761 * 13 12 11 39 39 H 1.08002 * 119.92729 * 179.76909 * 14 13 12 40 40 H 1.08003 * 119.94509 * 179.97438 * 17 15 14 41 41 H 0.97007 * 120.00006 * 95.00002 * 19 3 2 42 42 H 0.96998 * 120.00354 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0858 8 8 6.1634 2.1483 -0.2573 9 6 5.8981 4.4749 0.0368 10 1 5.3756 5.1679 -0.6224 11 6 7.4200 4.5738 -0.0710 12 6 7.3515 5.0461 1.3663 13 6 8.0830 5.4817 2.4646 14 6 7.4437 5.8108 3.6417 15 6 6.0651 5.7193 3.7336 16 9 5.4384 6.0470 4.8847 17 6 5.3321 5.2909 2.6406 18 6 5.9740 4.9568 1.4632 19 7 1.6523 2.0975 1.2518 20 6 0.4156 2.6734 1.3689 21 1 -0.2740 2.6452 0.5381 22 6 0.0485 3.2945 2.5548 23 7 0.8890 3.3293 3.5670 24 14 -1.6384 4.0808 2.7141 25 1 -2.3877 3.9067 1.4440 26 1 -2.3843 3.4320 3.8223 27 1 -1.4841 5.5293 3.0028 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8498 1.0378 -1.0960 34 1 3.9953 0.8311 0.6659 35 1 3.4410 3.5483 0.1315 36 1 7.9186 3.6129 -0.1985 37 1 7.7661 5.3322 -0.7732 38 1 9.1581 5.5590 2.3975 39 1 8.0193 6.1451 4.4923 40 1 4.2566 5.2176 2.7079 41 1 2.2719 2.1231 1.9978 42 1 0.6325 3.7629 4.3959 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753484628.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:11:37 Heat of formation + Delta-G solvation = -16.093997 kcal Electronic energy + Delta-G solvation = -25029.422372 eV Core-core repulsion = 21311.144688 eV Total energy + Delta-G solvation = -3718.277684 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.73796 -41.00215 -38.78780 -36.74832 -34.96962 -33.74302 -32.39226 -30.83459 -29.80362 -28.40377 -27.22849 -25.22295 -23.65008 -22.77449 -22.02725 -20.91624 -20.15366 -19.45986 -17.64722 -17.25712 -16.85937 -16.52837 -15.61087 -15.43860 -15.35812 -15.09398 -14.66078 -14.34024 -14.01297 -13.85949 -13.49115 -13.24417 -13.12713 -12.95206 -12.53699 -12.42832 -12.10536 -11.84039 -11.75665 -11.48909 -11.38017 -10.99482 -10.91783 -10.76445 -10.59672 -10.45376 -10.21476 -10.02807 -9.76994 -9.56378 -8.99748 -8.90672 -8.68278 -8.43193 -7.06025 -5.83605 -3.13187 1.08318 1.21901 2.76339 3.37413 3.41783 3.44242 3.46562 3.61645 3.91200 4.22255 4.39250 4.52011 4.54440 4.99677 5.01017 5.16394 5.27580 5.38062 5.42276 5.53476 5.54163 5.63727 5.71558 5.89400 5.91084 5.93869 5.94300 5.99734 6.13023 6.16677 6.17983 6.40016 6.51684 6.55133 6.58309 6.61202 6.85407 6.89154 6.99750 7.22051 7.64693 7.86477 8.33149 8.48034 9.45430 9.99946 10.35896 11.37911 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.011498 B = 0.004928 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.627553 B = 5680.502162 C = 7650.086251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.114 3.886 6 N -0.706 5.706 7 C 0.525 3.475 8 O -0.548 6.548 9 C -0.063 4.063 10 H 0.120 0.880 11 C -0.055 4.055 12 C -0.131 4.131 13 C -0.077 4.077 14 C -0.149 4.149 15 C 0.102 3.898 16 F -0.134 7.134 17 C -0.107 4.107 18 C -0.094 4.094 19 N -0.721 5.721 20 C -0.238 4.238 21 H 0.073 0.927 22 C -0.010 4.010 23 N -0.927 5.927 24 Si 0.901 3.099 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.040 0.960 29 H 0.032 0.968 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.411 0.589 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.127 0.873 39 H 0.136 0.864 40 H 0.145 0.855 41 H 0.385 0.615 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.181 3.872 -6.534 14.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.072 0.928 5 C -0.010 4.010 6 N -0.356 5.356 7 C 0.310 3.690 8 O -0.427 6.427 9 C -0.085 4.085 10 H 0.138 0.862 11 C -0.092 4.092 12 C -0.132 4.132 13 C -0.095 4.095 14 C -0.168 4.168 15 C 0.083 3.917 16 F -0.112 7.112 17 C -0.126 4.126 18 C -0.095 4.095 19 N -0.364 5.364 20 C -0.369 4.369 21 H 0.091 0.909 22 C -0.206 4.206 23 N -0.575 5.575 24 Si 0.732 3.268 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.103 0.897 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.248 0.752 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.145 0.855 39 H 0.154 0.846 40 H 0.163 0.837 41 H 0.219 0.781 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.505 3.303 -6.616 14.528 hybrid contribution -1.389 0.826 0.948 1.873 sum 11.116 4.129 -5.668 13.143 Atomic orbital electron populations 1.21766 0.95708 0.99629 1.03243 1.22068 0.96980 0.98403 1.00007 1.20565 0.89861 0.92836 0.91470 0.92828 1.21700 0.95710 0.82537 1.01102 1.45952 1.06946 1.10957 1.71781 1.19985 0.82682 0.89839 0.76503 1.90656 1.56079 1.45828 1.50129 1.21342 0.98510 0.95330 0.93271 0.86207 1.21704 0.93318 1.02990 0.91174 1.22380 0.94981 0.99433 0.96366 1.20271 0.99854 0.98490 0.90877 1.20948 0.92663 1.03983 0.99214 1.17335 0.90534 1.01348 0.82494 1.91531 1.82787 1.90119 1.46812 1.20305 1.01963 0.99861 0.90464 1.20921 0.95559 0.98858 0.94156 1.42461 1.16787 1.65848 1.11255 1.19231 0.91957 1.27719 0.98010 0.90884 1.24723 0.97969 1.01540 0.96391 1.69662 1.35041 1.48809 1.03943 0.86220 0.84218 0.78909 0.77444 1.20588 1.21938 1.21941 0.94131 0.94887 0.89667 0.93864 0.92550 0.91762 0.91854 0.75221 0.86896 0.88221 0.85478 0.84576 0.83686 0.78108 0.93507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.18 37.15 0.34 -2.23 16 2 C -0.13 -2.27 5.61 -26.73 -0.15 -2.42 16 3 C 0.16 2.93 2.59 -67.93 -0.18 2.76 16 4 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 5 C 0.11 1.89 5.23 -4.04 -0.02 1.87 16 6 N -0.71 -11.33 5.39 -60.29 -0.32 -11.65 16 7 C 0.53 8.31 7.33 -10.98 -0.08 8.23 16 8 O -0.55 -10.15 15.66 5.56 0.09 -10.06 16 9 C -0.06 -0.81 4.14 -96.56 -0.40 -1.21 16 10 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 11 C -0.05 -0.60 7.91 -27.58 -0.22 -0.82 16 12 C -0.13 -1.66 7.32 -107.55 -0.79 -2.45 16 13 C -0.08 -0.88 10.04 -39.42 -0.40 -1.28 16 14 C -0.15 -1.84 10.01 -39.61 -0.40 -2.23 16 15 C 0.10 1.54 7.31 -39.44 -0.29 1.25 16 16 F -0.13 -2.19 17.27 2.25 0.04 -2.15 16 17 C -0.11 -1.69 10.02 -39.54 -0.40 -2.09 16 18 C -0.09 -1.35 7.05 -104.56 -0.74 -2.09 16 19 N -0.72 -16.05 4.51 -53.43 -0.24 -16.29 16 20 C -0.24 -5.92 7.75 -15.06 -0.12 -6.03 16 21 H 0.07 1.79 7.33 -52.48 -0.38 1.40 16 22 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 23 N -0.93 -26.29 13.06 55.49 0.72 -25.56 16 24 Si 0.90 21.32 29.55 -169.99 -5.02 16.30 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 1.77 5.99 -51.93 -0.31 1.46 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.41 6.68 8.14 -40.82 -0.33 6.35 16 36 H 0.11 1.35 7.02 -51.93 -0.36 0.99 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.15 2.50 8.06 -52.48 -0.42 2.08 16 41 H 0.38 9.47 7.80 -40.82 -0.32 9.15 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 355.73 15.07 5.36 5.36 Total: -1.00 -29.35 355.73 -9.21 -38.57 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -5.92 Total: 14.58 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -3.92 Total: -9.09 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.16 Total: -53.50 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.35 -9.21 -38.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753484628.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.472 kcal (2) G-P(sol) polarization free energy of solvation -29.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds