Wall clock time and date at job start Tue Mar 31 2020 09:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47043 * 2 1 4 4 H 1.08995 * 109.47354 * 304.99789 * 3 2 1 5 5 C 1.53004 * 109.46998 * 185.00009 * 3 2 1 6 6 N 1.46499 * 109.46970 * 184.99942 * 5 3 2 7 7 C 1.34776 * 120.00070 * 179.97438 * 6 5 3 8 8 O 1.21280 * 119.99712 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.00308 * 179.97438 * 7 6 5 10 10 H 1.08991 * 112.55017 * 309.64254 * 9 7 6 11 11 C 1.52886 * 113.16523 * 179.77235 * 9 7 6 12 12 C 1.51438 * 84.73609 * 244.77949 * 11 9 7 13 13 C 1.38966 * 145.48980 * 180.36500 * 12 11 9 14 14 C 1.37939 * 120.35216 * 180.09599 * 13 12 11 15 15 C 1.38463 * 120.15028 * 359.48487 * 14 13 12 16 16 F 1.35101 * 120.15317 * 180.27914 * 15 14 13 17 17 C 1.38403 * 119.69588 * 0.25842 * 15 14 13 18 18 C 1.38198 * 120.10425 * 359.97438 * 17 15 14 19 19 N 1.46497 * 109.46955 * 65.00052 * 3 2 1 20 20 C 1.36934 * 120.00436 * 274.99925 * 19 3 2 21 21 H 1.08005 * 119.99291 * 359.97438 * 20 19 3 22 22 C 1.38808 * 120.00670 * 180.02562 * 20 19 3 23 23 N 1.31619 * 119.99840 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00160 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47119 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47047 * 120.00075 * 24 22 20 27 27 H 1.48501 * 109.46961 * 239.99492 * 24 22 20 28 28 H 1.09004 * 109.47235 * 59.99908 * 1 2 3 29 29 H 1.08999 * 109.47569 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47458 * 300.00269 * 1 2 3 31 31 H 1.09003 * 109.47035 * 240.00346 * 2 1 3 32 32 H 1.08997 * 109.47320 * 119.99719 * 2 1 3 33 33 H 1.08995 * 109.47022 * 65.00279 * 5 3 2 34 34 H 1.09002 * 109.47052 * 304.99826 * 5 3 2 35 35 H 0.96999 * 120.00229 * 0.02562 * 6 5 3 36 36 H 1.09000 * 113.98865 * 358.73076 * 11 9 7 37 37 H 1.09005 * 113.98200 * 130.67826 * 11 9 7 38 38 H 1.08000 * 119.82834 * 359.83761 * 13 12 11 39 39 H 1.08002 * 119.92729 * 179.76909 * 14 13 12 40 40 H 1.08003 * 119.94509 * 179.97438 * 17 15 14 41 41 H 0.97007 * 120.00006 * 95.00002 * 19 3 2 42 42 H 0.96998 * 120.00354 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0858 8 8 6.1634 2.1483 -0.2573 9 6 5.8981 4.4749 0.0368 10 1 5.3756 5.1679 -0.6224 11 6 7.4200 4.5738 -0.0710 12 6 7.3515 5.0461 1.3663 13 6 8.0830 5.4817 2.4646 14 6 7.4437 5.8108 3.6417 15 6 6.0651 5.7193 3.7336 16 9 5.4384 6.0470 4.8847 17 6 5.3321 5.2909 2.6406 18 6 5.9740 4.9568 1.4632 19 7 1.6523 2.0975 1.2518 20 6 0.4156 2.6734 1.3689 21 1 -0.2740 2.6452 0.5381 22 6 0.0485 3.2945 2.5548 23 7 0.8890 3.3293 3.5670 24 14 -1.6384 4.0808 2.7141 25 1 -2.3877 3.9067 1.4440 26 1 -2.3843 3.4320 3.8223 27 1 -1.4841 5.5293 3.0028 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8498 1.0378 -1.0960 34 1 3.9953 0.8311 0.6659 35 1 3.4410 3.5483 0.1315 36 1 7.9186 3.6129 -0.1985 37 1 7.7661 5.3322 -0.7732 38 1 9.1581 5.5590 2.3975 39 1 8.0193 6.1451 4.4923 40 1 4.2566 5.2176 2.7079 41 1 2.2719 2.1231 1.9978 42 1 0.6325 3.7629 4.3959 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753484628.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:11:37 Heat of formation + Delta-G solvation = -33.289438 kcal Electronic energy + Delta-G solvation = -25030.168022 eV Core-core repulsion = 21311.144688 eV Total energy + Delta-G solvation = -3719.023334 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.94624 -42.07610 -40.03669 -38.26973 -36.02438 -35.24578 -34.13759 -31.88373 -31.50793 -29.85106 -28.35697 -26.41028 -25.34886 -24.10533 -23.20823 -22.04433 -21.59741 -20.71001 -19.26797 -18.60461 -18.07826 -17.63369 -16.99976 -16.90623 -16.62783 -16.18079 -16.08699 -15.79678 -15.52848 -14.97853 -14.88712 -14.66668 -14.50470 -14.25370 -13.93875 -13.70044 -13.41447 -13.00568 -12.85906 -12.81964 -12.78146 -12.71474 -12.39459 -12.34856 -12.08298 -11.87434 -11.65339 -11.61907 -11.34205 -11.04827 -10.87304 -10.02945 -9.98607 -9.48826 -8.97864 -7.87974 -5.15026 0.03932 0.16353 1.46996 1.49478 1.52882 1.57102 2.23285 2.53563 2.58748 2.85481 3.25686 3.42612 3.46071 3.53649 3.83378 3.92022 3.96692 3.99046 4.24324 4.33209 4.38426 4.48059 4.51368 4.56731 4.64822 4.74770 4.84446 4.87361 4.97162 5.07634 5.10081 5.11822 5.13766 5.18640 5.21211 5.47505 5.56989 5.58075 5.61343 5.72111 5.85478 6.31250 6.56001 7.19463 7.39543 8.11741 8.36077 9.34456 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.011498 B = 0.004928 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.627553 B = 5680.502162 C = 7650.086251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.164 3.836 4 H 0.061 0.939 5 C 0.122 3.878 6 N -0.708 5.708 7 C 0.523 3.477 8 O -0.576 6.576 9 C -0.063 4.063 10 H 0.147 0.853 11 C -0.039 4.039 12 C -0.128 4.128 13 C -0.070 4.070 14 C -0.140 4.140 15 C 0.074 3.926 16 F -0.150 7.150 17 C -0.132 4.132 18 C -0.118 4.118 19 N -0.727 5.727 20 C -0.213 4.213 21 H 0.081 0.919 22 C -0.072 4.072 23 N -0.965 5.965 24 Si 0.955 3.045 25 H -0.264 1.264 26 H -0.303 1.303 27 H -0.301 1.301 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.410 0.590 36 H 0.106 0.894 37 H 0.140 0.860 38 H 0.167 0.833 39 H 0.164 0.836 40 H 0.113 0.887 41 H 0.371 0.629 42 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.793 3.981 -8.931 16.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.055 3.945 4 H 0.079 0.921 5 C -0.003 4.003 6 N -0.358 5.358 7 C 0.310 3.690 8 O -0.456 6.456 9 C -0.083 4.083 10 H 0.165 0.835 11 C -0.076 4.076 12 C -0.128 4.128 13 C -0.087 4.087 14 C -0.159 4.159 15 C 0.055 3.945 16 F -0.129 7.129 17 C -0.151 4.151 18 C -0.119 4.119 19 N -0.368 5.368 20 C -0.345 4.345 21 H 0.099 0.901 22 C -0.264 4.264 23 N -0.617 5.617 24 Si 0.787 3.213 25 H -0.188 1.188 26 H -0.231 1.231 27 H -0.229 1.229 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.064 0.936 35 H 0.246 0.754 36 H 0.124 0.876 37 H 0.158 0.842 38 H 0.185 0.815 39 H 0.182 0.818 40 H 0.131 0.869 41 H 0.202 0.798 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.101 3.394 -9.074 17.108 hybrid contribution -1.846 0.709 1.603 2.546 sum 12.255 4.102 -7.471 14.928 Atomic orbital electron populations 1.21694 0.95952 1.00568 1.01799 1.21990 0.96651 0.97399 1.00980 1.20733 0.90951 0.93267 0.89510 0.92062 1.21585 0.94379 0.82845 1.01461 1.45998 1.07370 1.10643 1.71749 1.20517 0.82105 0.90990 0.75414 1.90638 1.56517 1.47073 1.51414 1.21512 1.00352 0.93526 0.92929 0.83509 1.21773 0.91414 1.03678 0.90700 1.22762 0.93972 0.98481 0.97586 1.20712 1.01738 0.96565 0.89726 1.21291 0.91265 1.02666 1.00641 1.17676 0.91942 1.02966 0.81945 1.91480 1.83335 1.90490 1.47600 1.20220 1.00644 1.02077 0.92121 1.21118 0.96884 0.99493 0.94366 1.42587 1.15758 1.66074 1.12351 1.19520 0.92457 1.25085 0.97409 0.90084 1.25345 1.00767 1.03587 0.96740 1.69815 1.36641 1.50960 1.04241 0.85323 0.81202 0.77343 0.77446 1.18839 1.23148 1.22868 0.93074 0.92913 0.93382 0.90515 0.93882 0.89726 0.93612 0.75411 0.87592 0.84224 0.81536 0.81796 0.86915 0.79758 0.94661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.18 71.98 0.66 -4.10 16 2 C -0.13 -4.17 5.61 30.59 0.17 -4.00 16 3 C 0.16 5.74 2.59 44.99 0.12 5.85 16 4 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 5 C 0.12 3.93 5.23 86.38 0.45 4.39 16 6 N -0.71 -22.52 5.39 -463.06 -2.49 -25.02 16 7 C 0.52 16.14 7.33 87.66 0.64 16.78 16 8 O -0.58 -20.76 15.66 -3.03 -0.05 -20.81 16 9 C -0.06 -1.49 4.14 -14.64 -0.06 -1.55 16 10 H 0.15 2.64 8.14 -2.39 -0.02 2.62 16 11 C -0.04 -0.73 7.91 30.04 0.24 -0.49 16 12 C -0.13 -2.93 7.32 -21.76 -0.16 -3.09 16 13 C -0.07 -1.39 10.04 22.37 0.22 -1.16 16 14 C -0.14 -3.23 10.01 22.25 0.22 -3.01 16 15 C 0.07 2.30 7.31 22.36 0.16 2.46 16 16 F -0.15 -5.22 17.27 44.97 0.78 -4.44 16 17 C -0.13 -4.41 10.02 22.30 0.22 -4.18 16 18 C -0.12 -3.34 7.05 -19.82 -0.14 -3.48 16 19 N -0.73 -32.78 4.51 -322.94 -1.46 -34.23 16 20 C -0.21 -10.63 7.75 84.03 0.65 -9.98 16 21 H 0.08 3.89 7.33 -2.91 -0.02 3.87 16 22 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 23 N -0.97 -57.17 13.06 21.65 0.28 -56.89 16 24 Si 0.96 44.84 29.55 68.60 2.03 46.86 16 25 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 26 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 27 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 28 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.96 5.99 -2.39 -0.01 1.95 16 31 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.41 13.41 8.14 -92.71 -0.75 12.66 16 36 H 0.11 2.24 7.02 -2.39 -0.02 2.22 16 37 H 0.14 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 40 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 41 H 0.37 18.91 7.80 -92.70 -0.72 18.18 16 42 H 0.24 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -66.13 355.73 2.54 -63.59 By element: Atomic # 1 Polarization: 40.38 SS G_CDS: -0.42 Total: 39.96 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 3.87 Total: -9.03 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -3.67 Total: -116.14 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.05 Total: -20.81 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.78 Total: -4.44 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -66.13 2.54 -63.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753484628.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.300 kcal (2) G-P(sol) polarization free energy of solvation -66.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds