Wall clock time and date at job start Tue Mar 31 2020 08:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47308 * 2 1 4 4 C 1.53003 * 109.47193 * 120.00251 * 2 1 3 5 5 N 1.46500 * 109.47240 * 174.99880 * 4 2 1 6 6 C 1.46499 * 119.99886 * 270.00257 * 5 4 2 7 7 C 1.36939 * 120.00106 * 89.99846 * 5 4 2 8 8 H 1.08003 * 119.99472 * 22.93430 * 7 5 4 9 9 C 1.38810 * 120.00245 * 202.93958 * 7 5 4 10 10 N 1.31618 * 119.99876 * 11.70396 * 9 7 5 11 11 Si 1.86797 * 120.00246 * 191.70745 * 9 7 5 12 12 H 1.48502 * 109.47225 * 89.99782 * 11 9 7 13 13 H 1.48494 * 109.47367 * 210.00342 * 11 9 7 14 14 H 1.48506 * 109.47006 * 329.99916 * 11 9 7 15 15 N 1.46507 * 109.47120 * 239.99956 * 2 1 3 16 16 C 1.34775 * 119.99848 * 85.00001 * 15 2 1 17 17 O 1.21284 * 119.99995 * 0.02562 * 16 15 2 18 18 C 1.50696 * 120.00381 * 179.97438 * 16 15 2 19 19 H 1.08999 * 112.88244 * 51.66625 * 18 16 15 20 20 C 1.52248 * 113.59327 * 182.84136 * 18 16 15 21 21 C 1.50574 * 87.24115 * 114.58944 * 20 18 16 22 22 C 1.38820 * 147.27313 * 179.97438 * 21 20 18 23 23 C 1.38023 * 120.12279 * 180.02562 * 22 21 20 24 24 C 1.38456 * 119.95616 * 0.27532 * 23 22 21 25 25 F 1.35099 * 120.03601 * 179.72253 * 24 23 22 26 26 C 1.38286 * 119.92627 * 359.41173 * 24 23 22 27 27 C 1.37738 * 92.75531 * 359.97438 * 21 20 18 28 28 H 1.09000 * 109.47482 * 299.99832 * 1 2 3 29 29 H 1.09003 * 109.47304 * 59.99980 * 1 2 3 30 30 H 1.09000 * 109.47157 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47001 * 294.99850 * 4 2 1 32 32 H 1.08998 * 109.47006 * 55.00031 * 4 2 1 33 33 H 1.08990 * 109.47410 * 94.15571 * 6 5 4 34 34 H 1.09007 * 109.46964 * 214.15032 * 6 5 4 35 35 H 1.08998 * 109.47428 * 334.14908 * 6 5 4 36 36 H 0.97000 * 120.00010 * 179.97438 * 10 9 7 37 37 H 0.96996 * 120.00142 * 264.99919 * 15 2 1 38 38 H 1.08997 * 113.59225 * 359.97438 * 20 18 16 39 39 H 1.09004 * 113.59056 * 229.17820 * 20 18 16 40 40 H 1.08000 * 119.93662 * 0.04374 * 22 21 20 41 41 H 1.08005 * 120.02000 * 180.02562 * 23 22 21 42 42 H 1.08004 * 119.96494 * 180.27434 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.1257 -1.9920 0.5611 7 6 4.2799 0.1647 1.7240 8 1 3.8797 0.8139 2.4887 9 6 5.5846 0.3351 1.2818 10 7 6.0005 -0.2917 0.2018 11 14 6.7501 1.4539 2.2195 12 1 7.4670 0.6662 3.2544 13 1 7.7340 2.0451 1.2774 14 1 5.9756 2.5399 2.8723 15 7 2.0183 -0.6906 -1.1962 16 6 2.1470 -0.0183 -2.3572 17 8 1.8590 1.1586 -2.4115 18 6 2.6499 -0.7284 -3.5875 19 1 2.1029 -1.6470 -3.8000 20 6 2.8033 0.1831 -4.7973 21 6 4.2846 -0.0729 -4.7110 22 6 5.5448 0.1721 -5.2393 23 6 6.6596 -0.4093 -4.6698 24 6 6.5206 -1.2429 -3.5731 25 9 7.6101 -1.8172 -3.0179 26 6 5.2660 -1.4818 -3.0428 27 6 4.1458 -0.8970 -3.6162 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7516 -0.1584 2.1370 32 1 1.6054 -1.7198 1.2951 33 1 4.3470 -1.7666 -0.4820 34 1 5.0506 -2.2348 1.0844 35 1 3.4453 -2.8419 0.6127 36 1 6.9122 -0.1724 -0.1074 37 1 2.2490 -1.6318 -1.1527 38 1 2.5271 1.2190 -4.6008 39 1 2.3442 -0.2131 -5.7030 40 1 5.6531 0.8190 -6.0974 41 1 7.6393 -0.2172 -5.0820 42 1 5.1574 -2.1284 -2.1845 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754324147.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:04 Heat of formation + Delta-G solvation = 6.325327 kcal Electronic energy + Delta-G solvation = -26290.264820 eV Core-core repulsion = 22572.959311 eV Total energy + Delta-G solvation = -3717.305509 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.40703 -40.80588 -38.62342 -36.39522 -34.73717 -33.97175 -31.32648 -30.54709 -30.10353 -27.23033 -26.19017 -25.60596 -24.93565 -22.48722 -21.69947 -20.72468 -20.04365 -19.43752 -17.30028 -16.83300 -16.73798 -16.19179 -15.49162 -15.11231 -14.87776 -14.83353 -14.39811 -14.15974 -13.76318 -13.52036 -13.37861 -13.10415 -12.81749 -12.62267 -12.39686 -12.09786 -11.83491 -11.66334 -11.43189 -11.42178 -11.08551 -10.98283 -10.82287 -10.76925 -10.53709 -10.37407 -10.18215 -9.94312 -9.83167 -9.46917 -8.57579 -8.55004 -8.35240 -8.12851 -6.71932 -5.69550 -3.14373 1.40403 1.55511 3.08802 3.40855 3.47766 3.49060 3.68772 3.91372 4.27876 4.50108 4.53530 4.63798 4.83566 5.18439 5.27799 5.31057 5.38244 5.51091 5.55269 5.69150 5.79378 5.86349 5.90851 6.00121 6.02475 6.10106 6.15106 6.24143 6.27652 6.44942 6.46958 6.48906 6.53666 6.63319 6.88531 6.90586 7.17897 7.20624 7.32564 7.66031 7.83702 8.10846 8.41424 8.79240 9.25948 9.87956 10.35948 11.35226 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.010077 B = 0.007591 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.964187 B = 3687.694761 C = 5556.704916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 H 0.085 0.915 4 C 0.143 3.857 5 N -0.595 5.595 6 C 0.159 3.841 7 C -0.259 4.259 8 H 0.066 0.934 9 C 0.010 3.990 10 N -0.895 5.895 11 Si 0.900 3.100 12 H -0.289 1.289 13 H -0.293 1.293 14 H -0.281 1.281 15 N -0.693 5.693 16 C 0.534 3.466 17 O -0.546 6.546 18 C -0.067 4.067 19 H 0.116 0.884 20 C -0.054 4.054 21 C -0.135 4.135 22 C -0.078 4.078 23 C -0.151 4.151 24 C 0.106 3.894 25 F -0.136 7.136 26 C -0.083 4.083 27 C -0.093 4.093 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.034 0.966 34 H 0.044 0.956 35 H -0.008 1.008 36 H 0.251 0.749 37 H 0.395 0.605 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.124 0.876 41 H 0.133 0.867 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.252 -4.767 -10.047 12.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 H 0.103 0.897 4 C 0.015 3.985 5 N -0.317 5.317 6 C 0.014 3.986 7 C -0.389 4.389 8 H 0.084 0.916 9 C -0.190 4.190 10 N -0.539 5.539 11 Si 0.731 3.269 12 H -0.217 1.217 13 H -0.219 1.219 14 H -0.207 1.207 15 N -0.341 5.341 16 C 0.319 3.681 17 O -0.424 6.424 18 C -0.088 4.088 19 H 0.134 0.866 20 C -0.091 4.091 21 C -0.136 4.136 22 C -0.096 4.096 23 C -0.170 4.170 24 C 0.087 3.913 25 F -0.115 7.115 26 C -0.102 4.102 27 C -0.093 4.093 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.010 0.990 36 H 0.061 0.939 37 H 0.229 0.771 38 H 0.126 0.874 39 H 0.111 0.889 40 H 0.142 0.858 41 H 0.151 0.849 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.207 -3.962 -10.093 12.494 hybrid contribution 1.294 0.134 0.688 1.472 sum -4.913 -3.829 -9.405 11.281 Atomic orbital electron populations 1.22149 0.96893 1.01046 1.01671 1.21886 0.91610 0.99182 0.86424 0.89713 1.21187 0.85915 0.97119 0.94317 1.43840 0.98938 1.20819 1.68108 1.20929 0.94651 0.85026 0.97995 1.19113 0.94234 1.10568 1.14968 0.91625 1.24955 0.98686 0.98982 0.96342 1.69987 1.16789 1.45291 1.21854 0.86326 0.81091 0.80488 0.79005 1.21664 1.21898 1.20678 1.45737 1.65578 1.13651 1.09151 1.19763 0.77195 0.86935 0.84195 1.90639 1.51126 1.15642 1.85028 1.21163 0.92267 1.00219 0.95183 0.86586 1.21357 0.89605 1.01892 0.96247 1.21785 0.95293 0.98761 0.97732 1.20048 0.89836 0.99688 1.00017 1.20910 0.99578 0.99392 0.97086 1.17255 0.83022 0.96761 0.94240 1.91500 1.52391 1.82821 1.84781 1.20397 0.89377 1.01025 0.99356 1.20965 0.93705 0.98047 0.96611 0.92126 0.92990 0.93212 0.92376 0.94121 0.94768 0.93717 0.98978 0.93883 0.77125 0.87398 0.88920 0.85807 0.84932 0.84140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.48 37.16 0.35 -1.98 16 2 C 0.12 2.14 2.88 -67.93 -0.20 1.95 16 3 H 0.08 1.92 7.58 -51.93 -0.39 1.53 16 4 C 0.14 2.72 5.33 -4.04 -0.02 2.70 16 5 N -0.59 -13.95 2.78 -181.12 -0.50 -14.46 16 6 C 0.16 3.56 7.62 59.85 0.46 4.02 16 7 C -0.26 -6.94 9.66 -15.06 -0.15 -7.09 16 8 H 0.07 1.76 7.85 -52.48 -0.41 1.35 16 9 C 0.01 0.26 5.12 -17.43 -0.09 0.17 16 10 N -0.90 -24.88 10.64 55.49 0.59 -24.29 16 11 Si 0.90 22.28 29.57 -169.99 -5.03 17.25 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 N -0.69 -12.26 4.41 -53.81 -0.24 -12.49 16 16 C 0.53 9.85 7.32 -10.99 -0.08 9.77 16 17 O -0.55 -11.90 15.35 5.55 0.09 -11.81 16 18 C -0.07 -0.99 4.28 -93.66 -0.40 -1.40 16 19 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 20 C -0.05 -0.73 7.69 -28.62 -0.22 -0.95 16 21 C -0.14 -2.10 7.42 -104.94 -0.78 -2.88 16 22 C -0.08 -1.12 10.05 -39.45 -0.40 -1.52 16 23 C -0.15 -2.31 10.02 -39.58 -0.40 -2.71 16 24 C 0.11 1.91 7.30 -39.48 -0.29 1.62 16 25 F -0.14 -2.58 17.27 2.25 0.04 -2.54 16 26 C -0.08 -1.52 9.97 -39.37 -0.39 -1.91 16 27 C -0.09 -1.56 6.90 -104.96 -0.72 -2.29 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 32 H 0.04 0.68 7.86 -51.93 -0.41 0.27 16 33 H 0.03 0.79 5.06 -51.93 -0.26 0.53 16 34 H 0.04 1.12 7.24 -51.93 -0.38 0.75 16 35 H -0.01 -0.16 7.84 -51.93 -0.41 -0.57 16 36 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.39 6.42 7.16 -40.82 -0.29 6.13 16 38 H 0.11 1.63 7.02 -51.93 -0.36 1.27 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 42 H 0.14 2.71 6.29 -52.48 -0.33 2.38 16 LS Contribution 349.45 15.07 5.27 5.27 Total: -1.00 -31.28 349.45 -8.87 -40.15 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.76 Total: 5.41 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -3.32 Total: -2.49 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.15 Total: -51.24 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.28 -8.87 -40.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754324147.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.473 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds